HEADER LIGASE 14-FEB-20 6VU9 TITLE CRYSTAL STRUCTURE OF THREONYL-TRNA SYNTHETASE (THRRS) FROM TITLE 2 STENOTROPHOMONAS MALTOPHILIA K279A COMPND MOL_ID: 1; COMPND 2 MOLECULE: THREONINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: THREONYL-TRNA SYNTHETASE,THRRS; COMPND 5 EC: 6.1.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STENOTROPHOMONAS MALTOPHILIA (STRAIN K279A); SOURCE 3 ORGANISM_TAXID: 522373; SOURCE 4 STRAIN: K279A; SOURCE 5 GENE: THRS, SMLT3378; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AARS, AMINOACYL TRNA SYNTHETASE, NIAID, NATIONAL INSTITUTE OF ALLERGY KEYWDS 2 AND INFECTIOUS DISEASES, THRS, ANTIBIOTIC RESISTANCE, BORRELIDIN, KEYWDS 3 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 4 INFECTIOUS DISEASE, SSGCID, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 11-OCT-23 6VU9 1 REMARK REVDAT 1 04-MAR-20 6VU9 0 JRNL AUTH T.E.EDWARDS,D.M.DRANOW,J.ABENDROTH,P.S.HORANYI,D.D.LORIMER, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 3 (SSGCID) JRNL TITL CRYSTAL STRUCTURE OF THREONYL-TRNA SYNTHETASE (THRRS) FROM JRNL TITL 2 STENOTROPHOMONAS MALTOPHILIA K279A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1-3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 39585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 2033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8000 - 5.4200 1.00 2660 149 0.1710 0.2422 REMARK 3 2 5.4200 - 4.3100 1.00 2540 155 0.1541 0.1689 REMARK 3 3 4.3000 - 3.7600 1.00 2552 134 0.1664 0.2168 REMARK 3 4 3.7600 - 3.4200 1.00 2499 145 0.1898 0.2166 REMARK 3 5 3.4200 - 3.1700 1.00 2532 128 0.2091 0.2202 REMARK 3 6 3.1700 - 2.9900 1.00 2509 131 0.2167 0.2465 REMARK 3 7 2.9900 - 2.8400 1.00 2480 137 0.2238 0.2467 REMARK 3 8 2.8400 - 2.7100 0.99 2505 136 0.2199 0.2641 REMARK 3 9 2.7100 - 2.6100 0.99 2486 128 0.2181 0.2683 REMARK 3 10 2.6100 - 2.5200 0.99 2484 128 0.2185 0.2649 REMARK 3 11 2.5200 - 2.4400 0.99 2475 123 0.2232 0.2322 REMARK 3 12 2.4400 - 2.3700 0.99 2448 135 0.2393 0.3065 REMARK 3 13 2.3700 - 2.3100 0.99 2476 135 0.2433 0.3242 REMARK 3 14 2.3100 - 2.2500 0.99 2430 147 0.2544 0.3516 REMARK 3 15 2.2500 - 2.2000 0.99 2476 122 0.2720 0.3641 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8017 -47.3342 -4.8203 REMARK 3 T TENSOR REMARK 3 T11: 0.5640 T22: 0.4703 REMARK 3 T33: 0.8954 T12: 0.0648 REMARK 3 T13: 0.0272 T23: 0.0429 REMARK 3 L TENSOR REMARK 3 L11: 4.4207 L22: 1.1688 REMARK 3 L33: 2.5009 L12: 0.2806 REMARK 3 L13: 0.8817 L23: -0.3916 REMARK 3 S TENSOR REMARK 3 S11: -0.4044 S12: -0.3312 S13: -0.6904 REMARK 3 S21: 0.0393 S22: -0.0049 S23: -0.1113 REMARK 3 S31: -0.1520 S32: -0.2226 S33: 0.3710 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8262 -28.1871 -15.1624 REMARK 3 T TENSOR REMARK 3 T11: 0.8384 T22: 0.5051 REMARK 3 T33: 0.7260 T12: -0.0692 REMARK 3 T13: -0.2426 T23: 0.0704 REMARK 3 L TENSOR REMARK 3 L11: 0.6006 L22: 2.5933 REMARK 3 L33: 0.4196 L12: 0.3916 REMARK 3 L13: -1.4476 L23: -2.7517 REMARK 3 S TENSOR REMARK 3 S11: -0.0726 S12: -0.0070 S13: -0.5965 REMARK 3 S21: 0.1024 S22: -0.2658 S23: -0.2705 REMARK 3 S31: 0.0148 S32: 0.1904 S33: 0.3129 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 268 THROUGH 541 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9801 -13.2616 -49.0480 REMARK 3 T TENSOR REMARK 3 T11: 0.3974 T22: 0.3171 REMARK 3 T33: 0.3858 T12: 0.0028 REMARK 3 T13: -0.0342 T23: -0.0496 REMARK 3 L TENSOR REMARK 3 L11: 2.3811 L22: 2.2681 REMARK 3 L33: 2.1837 L12: -0.1507 REMARK 3 L13: 0.0033 L23: 0.5654 REMARK 3 S TENSOR REMARK 3 S11: 0.1760 S12: 0.3487 S13: -0.4914 REMARK 3 S21: -0.1755 S22: 0.0099 S23: -0.3232 REMARK 3 S31: 0.3443 S32: -0.0552 S33: -0.1664 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 542 THROUGH 633 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.7392 -5.5853 -17.9460 REMARK 3 T TENSOR REMARK 3 T11: 0.7831 T22: 1.0230 REMARK 3 T33: 1.1728 T12: -0.0467 REMARK 3 T13: -0.2893 T23: -0.0763 REMARK 3 L TENSOR REMARK 3 L11: 3.8298 L22: 3.1742 REMARK 3 L33: 3.3546 L12: 0.2262 REMARK 3 L13: 0.3318 L23: 0.1388 REMARK 3 S TENSOR REMARK 3 S11: 0.5375 S12: -0.9609 S13: 0.2823 REMARK 3 S21: 0.5520 S22: 0.0519 S23: -0.9481 REMARK 3 S31: 0.0681 S32: 0.7067 S33: -0.5545 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VU9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000247107. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39658 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 39.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.260 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 8.43 REMARK 200 R MERGE FOR SHELL (I) : 0.59900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MR-ROSETTA REMARK 200 STARTING MODEL: 4HTA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: STMAA.00156.A.B1.PW38695 AT MG/ML REMARK 280 AGAINST MCSG1 SCREEN CONDITION C8: 0.2 SODIUM SULFATE, 0.1 M REMARK 280 SODIUM CITRATE PH 5.6, 20% PEG 4000 SUPPLEMENTED WITH 15% REMARK 280 ETHYLENE GLYCOL AS CRYOPROTECTANT, UNIQUE PUCK ID YGN6-7, REMARK 280 CRYSTAL ID 312751C8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.41500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.41500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 61.53500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 81.96500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 61.53500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 81.96500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.41500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 61.53500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 81.96500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.41500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 61.53500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 81.96500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 920 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 3 CG OD1 ND2 REMARK 470 ARG A 11 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 ASN A 16 CG OD1 ND2 REMARK 470 ILE A 51 CG1 CG2 CD1 REMARK 470 GLU A 65 CG CD OE1 OE2 REMARK 470 ILE A 128 CG1 CG2 CD1 REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 GLN A 168 CG CD OE1 NE2 REMARK 470 ARG A 183 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 ARG A 200 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 211 CG CD OE1 NE2 REMARK 470 LYS A 226 CG CD CE NZ REMARK 470 LYS A 234 CG CD CE NZ REMARK 470 GLU A 237 CG CD OE1 OE2 REMARK 470 GLU A 238 CG CD OE1 OE2 REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 470 ARG A 246 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 LEU A 345 CG CD1 CD2 REMARK 470 ASP A 414 CG OD1 OD2 REMARK 470 GLN A 417 CG CD OE1 NE2 REMARK 470 LYS A 436 CG CD CE NZ REMARK 470 VAL A 450 CG1 CG2 REMARK 470 LYS A 471 CG CD CE NZ REMARK 470 GLU A 500 CG CD OE1 OE2 REMARK 470 ASN A 501 CG OD1 ND2 REMARK 470 GLN A 503 CG CD OE1 NE2 REMARK 470 LYS A 504 CG CD CE NZ REMARK 470 LYS A 505 CG CD CE NZ REMARK 470 ILE A 547 CG1 CG2 CD1 REMARK 470 GLN A 551 CG CD OE1 NE2 REMARK 470 ARG A 574 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 575 CG OD1 ND2 REMARK 470 LYS A 577 CG CD CE NZ REMARK 470 LYS A 581 CG CD CE NZ REMARK 470 ILE A 582 CG1 CG2 CD1 REMARK 470 ARG A 589 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 598 CG OD1 OD2 REMARK 470 ARG A 599 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 601 CG CD CE NZ REMARK 470 ASN A 603 CG OD1 ND2 REMARK 470 VAL A 608 CG1 CG2 REMARK 470 ARG A 609 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 616 CG CD1 CD2 REMARK 470 LEU A 621 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 16 123.39 69.87 REMARK 500 VAL A 93 -95.52 -104.41 REMARK 500 GLN A 176 -111.64 54.95 REMARK 500 THR A 199 -93.53 -115.83 REMARK 500 ARG A 207 15.07 57.79 REMARK 500 MET A 488 -51.46 -122.62 REMARK 500 ASP A 499 -153.35 -105.64 REMARK 500 SER A 502 16.45 59.12 REMARK 500 MET A 619 144.40 -170.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 334 SG REMARK 620 2 HIS A 385 NE2 106.7 REMARK 620 3 HIS A 511 ND1 105.7 101.9 REMARK 620 4 HOH A 822 O 121.8 100.0 118.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 703 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-STMAA.00156.A RELATED DB: TARGETTRACK DBREF 6VU9 A 1 633 UNP B2FN79 SYT_STRMK 1 633 SEQADV 6VU9 MET A -7 UNP B2FN79 INITIATING METHIONINE SEQADV 6VU9 ALA A -6 UNP B2FN79 EXPRESSION TAG SEQADV 6VU9 HIS A -5 UNP B2FN79 EXPRESSION TAG SEQADV 6VU9 HIS A -4 UNP B2FN79 EXPRESSION TAG SEQADV 6VU9 HIS A -3 UNP B2FN79 EXPRESSION TAG SEQADV 6VU9 HIS A -2 UNP B2FN79 EXPRESSION TAG SEQADV 6VU9 HIS A -1 UNP B2FN79 EXPRESSION TAG SEQADV 6VU9 HIS A 0 UNP B2FN79 EXPRESSION TAG SEQRES 1 A 641 MET ALA HIS HIS HIS HIS HIS HIS MET ILE ASN ILE THR SEQRES 2 A 641 LEU PRO ASP GLY SER ARG ARG GLU PHE GLU ASN PRO VAL SEQRES 3 A 641 SER VAL MET GLU VAL ALA GLN SER ILE GLY ALA GLY LEU SEQRES 4 A 641 ALA LYS ALA THR ILE ALA GLY ALA VAL ASP GLY VAL LEU SEQRES 5 A 641 VAL ASP ALA SER ASP VAL ILE ASP HIS ASP ALA SER LEU SEQRES 6 A 641 ARG ILE ILE THR ALA LYS ASP GLU GLU GLY VAL GLU ILE SEQRES 7 A 641 ILE ARG HIS SER CYS ALA HIS LEU VAL GLY HIS ALA VAL SEQRES 8 A 641 LYS GLN LEU TYR PRO ASP VAL LYS MET VAL ILE GLY PRO SEQRES 9 A 641 VAL ILE ALA GLU GLY PHE TYR TYR ASP ILE TYR SER GLU SEQRES 10 A 641 ARG PRO PHE THR PRO ASP ASP MET ALA ALA ILE GLU LYS SEQRES 11 A 641 ARG MET GLY GLU LEU ILE ALA GLN ASP TYR ASP VAL ILE SEQRES 12 A 641 LYS LYS MET THR PRO ARG ALA GLU VAL ILE GLU ILE PHE SEQRES 13 A 641 LYS ALA ARG GLY GLU ASP TYR LYS LEU ARG LEU ILE GLU SEQRES 14 A 641 ASP MET SER GLU ASP ILE GLN ALA MET GLY MET TYR TYR SEQRES 15 A 641 HIS GLN GLU TYR VAL ASP MET CYS ARG GLY PRO HIS VAL SEQRES 16 A 641 PRO ASN THR ARG PHE LEU LYS ALA PHE LYS LEU THR ARG SEQRES 17 A 641 ILE SER GLY ALA TYR TRP ARG GLY ASP ALA GLN ASN GLU SEQRES 18 A 641 GLN LEU GLN ARG ILE TYR GLY THR ALA TRP ALA ASP LYS SEQRES 19 A 641 LYS GLN LEU GLU ALA TYR ILE LYS ARG ILE GLU GLU ALA SEQRES 20 A 641 GLU MET ARG ASP HIS ARG ARG ILE GLY LYS GLN GLN ASP SEQRES 21 A 641 LEU PHE HIS LEU GLN GLU GLU ALA PRO GLY LEU VAL PHE SEQRES 22 A 641 TRP HIS PRO LYS GLY TRP ALA LEU TRP GLN VAL VAL GLU SEQRES 23 A 641 GLN TYR MET ARG LYS VAL TYR ARG ASN SER GLY TYR GLY SEQRES 24 A 641 GLU VAL ARG CYS PRO GLN ILE LEU ASP VAL SER LEU TRP SEQRES 25 A 641 LYS LYS SER GLY HIS TRP ASP ASN TYR GLN ASP ASN MET SEQRES 26 A 641 PHE PHE THR GLU SER GLU LYS ARG THR TYR ALA VAL LYS SEQRES 27 A 641 PRO MET ASN CYS PRO GLY HIS ILE GLN VAL PHE ASN GLN SEQRES 28 A 641 GLY LEU HIS SER TYR ARG ASP LEU PRO ILE ARG TYR GLY SEQRES 29 A 641 GLU PHE GLY SER CYS HIS ARG ASN GLU PRO SER GLY ALA SEQRES 30 A 641 LEU HIS GLY ILE LEU ARG VAL ARG GLY PHE THR GLN ASP SEQRES 31 A 641 ASP GLY HIS VAL PHE CYS THR GLU ASN GLN ILE GLU SER SEQRES 32 A 641 GLU VAL THR ALA PHE HIS GLN GLN ALA LEU ALA VAL TYR SEQRES 33 A 641 GLN HIS PHE GLY PHE ASP GLU ILE GLN ILE LYS ILE ALA SEQRES 34 A 641 LEU ARG PRO GLU SER ARG LEU GLY ASP ASP ALA THR TRP SEQRES 35 A 641 ASP LYS ALA GLU GLY ALA LEU ARG SER ALA LEU THR ALA SEQRES 36 A 641 CYS GLY VAL GLU TRP GLN GLU LEU PRO GLY GLU GLY ALA SEQRES 37 A 641 PHE TYR GLY PRO LYS ILE GLU TYR HIS LEU LYS ASP ALA SEQRES 38 A 641 ILE GLY ARG THR TRP GLN LEU GLY THR MET GLN VAL ASP SEQRES 39 A 641 PHE MET MET PRO GLY ARG LEU GLY ALA GLU TYR VAL ASP SEQRES 40 A 641 GLU ASN SER GLN LYS LYS HIS PRO VAL MET LEU HIS ARG SEQRES 41 A 641 ALA ILE VAL GLY SER MET GLU ARG PHE LEU GLY ILE LEU SEQRES 42 A 641 ILE GLU HIS HIS ALA GLY GLN PHE PRO ALA TRP LEU ALA SEQRES 43 A 641 PRO THR GLN VAL VAL VAL ALA ASN ILE THR ASP ALA GLN SEQRES 44 A 641 ALA ASP TYR VAL SER GLY VAL THR LYS THR LEU ALA GLU SEQRES 45 A 641 GLN GLY PHE ARG VAL SER SER ASP LEU ARG ASN GLU LYS SEQRES 46 A 641 ILE GLY TYR LYS ILE ARG GLU HIS THR LEU GLN ARG VAL SEQRES 47 A 641 PRO TYR LEU LEU VAL ILE GLY ASP ARG GLU LYS GLU ASN SEQRES 48 A 641 GLY ALA VAL ALA VAL ARG THR ARG SER GLY GLU ASP LEU SEQRES 49 A 641 GLY SER MET SER LEU GLN ALA PHE ILE GLU ARG LEU HIS SEQRES 50 A 641 ALA GLU GLY ALA HET SO4 A 701 5 HET ZN A 702 1 HET SO4 A 703 5 HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 3 ZN ZN 2+ FORMUL 5 HOH *120(H2 O) HELIX 1 AA1 VAL A 20 GLY A 28 1 9 HELIX 2 AA2 GLY A 28 ALA A 34 1 7 HELIX 3 AA3 ASP A 64 TYR A 87 1 24 HELIX 4 AA4 THR A 113 ALA A 129 1 17 HELIX 5 AA5 ARG A 141 ARG A 151 1 11 HELIX 6 AA6 GLU A 153 GLU A 161 1 9 HELIX 7 AA7 ASN A 189 LYS A 194 5 6 HELIX 8 AA8 ARG A 207 ASP A 209 5 3 HELIX 9 AA9 ASP A 225 MET A 241 1 17 HELIX 10 AB1 ASP A 243 GLN A 251 1 9 HELIX 11 AB2 HIS A 267 SER A 288 1 22 HELIX 12 AB3 VAL A 301 SER A 307 1 7 HELIX 13 AB4 HIS A 309 GLN A 314 1 6 HELIX 14 AB5 ASN A 333 GLY A 344 1 12 HELIX 15 AB6 PRO A 366 LEU A 370 5 5 HELIX 16 AB7 THR A 389 ASN A 391 5 3 HELIX 17 AB8 GLN A 392 PHE A 411 1 20 HELIX 18 AB9 ASP A 430 CYS A 448 1 19 HELIX 19 AC1 MET A 488 LEU A 493 1 6 HELIX 20 AC2 SER A 517 HIS A 529 1 13 HELIX 21 AC3 GLN A 551 GLN A 565 1 15 HELIX 22 AC4 LYS A 577 GLN A 588 1 12 HELIX 23 AC5 GLY A 597 GLY A 604 1 8 HELIX 24 AC6 LEU A 621 GLU A 631 1 11 SHEET 1 AA1 3 ARG A 11 ARG A 12 0 SHEET 2 AA1 3 ILE A 4 THR A 5 -1 N ILE A 4 O ARG A 12 SHEET 3 AA1 3 ALA A 55 SER A 56 1 O ALA A 55 N THR A 5 SHEET 1 AA2 2 VAL A 18 SER A 19 0 SHEET 2 AA2 2 VAL A 50 ILE A 51 -1 O ILE A 51 N VAL A 18 SHEET 1 AA3 3 VAL A 43 ASP A 46 0 SHEET 2 AA3 3 THR A 35 VAL A 40 -1 N GLY A 38 O VAL A 45 SHEET 3 AA3 3 ILE A 59 THR A 61 -1 O ILE A 60 N ALA A 37 SHEET 1 AA4 3 LYS A 91 MET A 92 0 SHEET 2 AA4 3 GLY A 101 TYR A 107 -1 O TYR A 107 N LYS A 91 SHEET 3 AA4 3 VAL A 97 ILE A 98 -1 N ILE A 98 O GLY A 101 SHEET 1 AA5 4 LYS A 91 MET A 92 0 SHEET 2 AA5 4 GLY A 101 TYR A 107 -1 O TYR A 107 N LYS A 91 SHEET 3 AA5 4 GLN A 214 ALA A 222 -1 O GLN A 216 N ILE A 106 SHEET 4 AA5 4 PHE A 196 TYR A 205 -1 N SER A 202 O ARG A 217 SHEET 1 AA6 3 ILE A 135 PRO A 140 0 SHEET 2 AA6 3 ALA A 169 HIS A 175 -1 O MET A 172 N LYS A 137 SHEET 3 AA6 3 TYR A 178 MET A 181 -1 O ASP A 180 N TYR A 173 SHEET 1 AA7 2 PHE A 254 GLN A 257 0 SHEET 2 AA7 2 ALA A 260 TRP A 266 -1 O PHE A 265 N HIS A 255 SHEET 1 AA8 8 GLY A 291 GLU A 292 0 SHEET 2 AA8 8 ILE A 353 HIS A 362 1 O ARG A 354 N GLY A 291 SHEET 3 AA8 8 GLY A 378 CYS A 388 -1 O PHE A 387 N ILE A 353 SHEET 4 AA8 8 VAL A 508 ALA A 513 -1 O VAL A 508 N CYS A 388 SHEET 5 AA8 8 THR A 477 ASP A 486 -1 N GLN A 484 O HIS A 511 SHEET 6 AA8 8 LYS A 465 LYS A 471 -1 N LEU A 470 O TRP A 478 SHEET 7 AA8 8 ILE A 416 ALA A 421 -1 N LYS A 419 O GLU A 467 SHEET 8 AA8 8 GLN A 453 LEU A 455 1 O LEU A 455 N ILE A 420 SHEET 1 AA9 3 ILE A 298 ASP A 300 0 SHEET 2 AA9 3 ARG A 325 VAL A 329 -1 O ALA A 328 N LEU A 299 SHEET 3 AA9 3 PHE A 319 SER A 322 -1 N THR A 320 O TYR A 327 SHEET 1 AB1 2 TYR A 497 VAL A 498 0 SHEET 2 AB1 2 LYS A 504 LYS A 505 -1 O LYS A 505 N TYR A 497 SHEET 1 AB2 5 VAL A 569 ASP A 572 0 SHEET 2 AB2 5 VAL A 542 ASN A 546 1 N VAL A 544 O ASP A 572 SHEET 3 AB2 5 TYR A 592 ILE A 596 1 O LEU A 594 N ALA A 545 SHEET 4 AB2 5 ALA A 605 THR A 610 -1 O ALA A 607 N VAL A 595 SHEET 5 AB2 5 ASP A 615 SER A 620 -1 O MET A 619 N VAL A 606 LINK SG CYS A 334 ZN ZN A 702 1555 1555 2.34 LINK NE2 HIS A 385 ZN ZN A 702 1555 1555 1.95 LINK ND1 HIS A 511 ZN ZN A 702 1555 1555 2.03 LINK ZN ZN A 702 O HOH A 822 1555 1555 2.04 CISPEP 1 GLY A 184 PRO A 185 0 7.34 CISPEP 2 LEU A 351 PRO A 352 0 1.94 SITE 1 AC1 5 GLY A 308 ASP A 311 ARG A 492 HOH A 830 SITE 2 AC1 5 HOH A 861 SITE 1 AC2 4 CYS A 334 HIS A 385 HIS A 511 HOH A 822 SITE 1 AC3 2 TRP A 206 ARG A 207 CRYST1 123.070 163.930 76.830 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008125 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006100 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013016 0.00000