HEADER PROTEIN BINDING 14-FEB-20 6VUB TITLE CRYSTAL STRUCTURE OF BRD4 BROMODOMAIN 1 WITH N-METHYLPYRROLIDIN-2-ONE TITLE 2 (NMP) DERIVATIVE 5 (1-METHYL-4-PHENYLPYRROLIDIN-2-ONE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BROMODOMAIN 1 (UNP RESIDUES 44-168); COMPND 5 SYNONYM: PROTEIN HUNK1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD4, HUNK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28(A) KEYWDS BRD4 BD1, BROMODOMAIN, NMP, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR O.V.ILYICHOVA,M.J.SCANLON,P.E.THOMPSON REVDAT 3 11-OCT-23 6VUB 1 REMARK REVDAT 2 18-MAR-20 6VUB 1 JRNL REVDAT 1 26-FEB-20 6VUB 0 JRNL AUTH J.P.HILTON-PROCTOR,O.ILYICHOVA,Z.ZHENG,I.G.JENNINGS, JRNL AUTH 2 R.W.JOHNSTONE,J.SHORTT,S.J.MOUNTFORD,M.J.SCANLON, JRNL AUTH 3 P.E.THOMPSON JRNL TITL SUBSTITUTED 1-METHYL-4-PHENYLPYRROLIDIN-2-ONES - JRNL TITL 2 FRAGMENT-BASED DESIGN OF N-METHYLPYRROLIDONE-DERIVED JRNL TITL 3 BROMODOMAIN INHIBITORS. JRNL REF EUR.J.MED.CHEM. V. 191 12120 2020 JRNL REFN ISSN 0223-5234 JRNL PMID 32120339 JRNL DOI 10.1016/J.EJMECH.2020.112120 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 21531 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1083 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.2400 - 3.0000 1.00 2728 132 0.1479 0.1370 REMARK 3 2 3.0000 - 2.3800 1.00 2585 136 0.1564 0.1815 REMARK 3 3 2.3800 - 2.0800 1.00 2546 139 0.1460 0.1932 REMARK 3 4 2.0800 - 1.8900 1.00 2544 135 0.1511 0.1758 REMARK 3 5 1.8900 - 1.7500 1.00 2521 137 0.1639 0.2006 REMARK 3 6 1.7500 - 1.6500 1.00 2528 117 0.1657 0.1926 REMARK 3 7 1.6500 - 1.5700 1.00 2483 140 0.1743 0.2111 REMARK 3 8 1.5700 - 1.5000 1.00 2513 147 0.1863 0.2107 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.124 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 7.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1201 REMARK 3 ANGLE : 0.816 1653 REMARK 3 CHIRALITY : 0.044 176 REMARK 3 PLANARITY : 0.005 219 REMARK 3 DIHEDRAL : 8.346 998 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3144 6.9038 -17.2102 REMARK 3 T TENSOR REMARK 3 T11: 0.0884 T22: 0.1078 REMARK 3 T33: 0.0541 T12: -0.0084 REMARK 3 T13: 0.0195 T23: 0.0318 REMARK 3 L TENSOR REMARK 3 L11: 2.0202 L22: 5.1929 REMARK 3 L33: 4.2320 L12: 1.2562 REMARK 3 L13: 1.4233 L23: 3.5199 REMARK 3 S TENSOR REMARK 3 S11: 0.0576 S12: 0.2178 S13: 0.0405 REMARK 3 S21: -0.0213 S22: 0.1047 S23: -0.1150 REMARK 3 S31: -0.1383 S32: 0.1148 S33: -0.1382 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1121 -8.0041 -26.4044 REMARK 3 T TENSOR REMARK 3 T11: 0.2032 T22: 0.0922 REMARK 3 T33: 0.0771 T12: 0.0143 REMARK 3 T13: 0.0500 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.7104 L22: 4.2353 REMARK 3 L33: 0.8388 L12: -1.2339 REMARK 3 L13: 1.1203 L23: -0.0637 REMARK 3 S TENSOR REMARK 3 S11: -0.0316 S12: 0.1435 S13: 0.1406 REMARK 3 S21: -0.0666 S22: -0.1080 S23: -0.1385 REMARK 3 S31: 0.1497 S32: -0.1038 S33: 0.1333 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0229 -15.1753 -15.1602 REMARK 3 T TENSOR REMARK 3 T11: 0.1464 T22: 0.1098 REMARK 3 T33: 0.0523 T12: -0.0658 REMARK 3 T13: 0.0063 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 2.5219 L22: 3.4776 REMARK 3 L33: 2.3808 L12: -1.0445 REMARK 3 L13: -0.0393 L23: -0.5945 REMARK 3 S TENSOR REMARK 3 S11: -0.0316 S12: 0.0888 S13: -0.1857 REMARK 3 S21: -0.3501 S22: 0.0092 S23: 0.0355 REMARK 3 S31: 0.6226 S32: -0.4110 S33: 0.0662 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3802 -8.5287 -7.5261 REMARK 3 T TENSOR REMARK 3 T11: 0.0298 T22: 0.0743 REMARK 3 T33: 0.0650 T12: -0.0139 REMARK 3 T13: -0.0012 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.8868 L22: 6.1844 REMARK 3 L33: 2.4811 L12: 0.3724 REMARK 3 L13: -1.4573 L23: 0.0370 REMARK 3 S TENSOR REMARK 3 S11: 0.0408 S12: 0.1380 S13: -0.0211 REMARK 3 S21: -0.1299 S22: -0.0251 S23: 0.2625 REMARK 3 S31: 0.0516 S32: -0.2773 S33: -0.0630 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4860 5.0666 -1.4449 REMARK 3 T TENSOR REMARK 3 T11: 0.0291 T22: 0.0447 REMARK 3 T33: 0.0360 T12: 0.0080 REMARK 3 T13: 0.0079 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 2.0457 L22: 2.6593 REMARK 3 L33: 0.7712 L12: 1.2707 REMARK 3 L13: -0.2545 L23: -0.3599 REMARK 3 S TENSOR REMARK 3 S11: 0.0057 S12: -0.0384 S13: 0.0604 REMARK 3 S21: 0.0555 S22: 0.0006 S23: 0.0409 REMARK 3 S31: -0.0256 S32: -0.0623 S33: -0.0035 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8581 1.6551 -10.9744 REMARK 3 T TENSOR REMARK 3 T11: 0.0357 T22: 0.0434 REMARK 3 T33: 0.0291 T12: 0.0036 REMARK 3 T13: 0.0050 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.8332 L22: 3.2947 REMARK 3 L33: 2.0428 L12: 1.8652 REMARK 3 L13: 0.6754 L23: 1.5135 REMARK 3 S TENSOR REMARK 3 S11: -0.0977 S12: 0.1076 S13: -0.0131 REMARK 3 S21: -0.1493 S22: 0.0540 S23: -0.0194 REMARK 3 S31: -0.1160 S32: 0.0014 S33: 0.0513 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4278 -5.7827 -10.8682 REMARK 3 T TENSOR REMARK 3 T11: 0.0293 T22: 0.0495 REMARK 3 T33: 0.0499 T12: 0.0003 REMARK 3 T13: 0.0084 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.2633 L22: 2.0474 REMARK 3 L33: 4.3785 L12: 0.3487 REMARK 3 L13: 0.3838 L23: 1.9907 REMARK 3 S TENSOR REMARK 3 S11: 0.0014 S12: 0.0515 S13: -0.0238 REMARK 3 S21: -0.0240 S22: 0.0328 S23: -0.1419 REMARK 3 S31: 0.0960 S32: 0.0435 S33: -0.0474 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6870 2.6178 8.4691 REMARK 3 T TENSOR REMARK 3 T11: 0.1848 T22: 0.2201 REMARK 3 T33: 0.0672 T12: 0.0341 REMARK 3 T13: -0.0287 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 4.5280 L22: 3.6825 REMARK 3 L33: 5.1469 L12: -1.0324 REMARK 3 L13: 0.0005 L23: -4.1919 REMARK 3 S TENSOR REMARK 3 S11: 0.0700 S12: -0.8286 S13: 0.0694 REMARK 3 S21: 0.8181 S22: 0.2197 S23: -0.2105 REMARK 3 S31: 0.0292 S32: 0.7337 S33: -0.0904 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3611 -10.2569 0.5385 REMARK 3 T TENSOR REMARK 3 T11: 0.0336 T22: 0.0506 REMARK 3 T33: 0.0499 T12: 0.0081 REMARK 3 T13: -0.0083 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.3365 L22: 5.5574 REMARK 3 L33: 3.2545 L12: 0.4911 REMARK 3 L13: -0.4979 L23: 2.0829 REMARK 3 S TENSOR REMARK 3 S11: -0.0349 S12: -0.0529 S13: -0.0517 REMARK 3 S21: 0.2602 S22: 0.0455 S23: 0.0476 REMARK 3 S31: 0.2795 S32: -0.0158 S33: -0.0220 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8238 -22.3535 -16.9776 REMARK 3 T TENSOR REMARK 3 T11: 0.5640 T22: 0.1946 REMARK 3 T33: 0.1768 T12: 0.0074 REMARK 3 T13: 0.0900 T23: -0.0454 REMARK 3 L TENSOR REMARK 3 L11: 5.5561 L22: 6.3832 REMARK 3 L33: 5.4080 L12: -2.9253 REMARK 3 L13: -4.2595 L23: 3.4098 REMARK 3 S TENSOR REMARK 3 S11: 0.0748 S12: 1.0322 S13: -0.2269 REMARK 3 S21: -1.2330 S22: -0.3008 S23: -0.0323 REMARK 3 S31: 0.3655 S32: -0.1477 S33: 0.1403 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VUB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000246435. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21587 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 39.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.17700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.05600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5DW2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM NITRATE, 35% PEG3350, 6% REMARK 280 V/V ETHYLENE GLYCOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.80950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.23900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.01100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.23900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.80950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 22.01100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 59 CD OE1 NE2 REMARK 470 LYS A 91 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 507 O HOH A 529 4445 2.05 REMARK 500 O HOH A 451 O HOH A 452 3644 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 52 95.32 -163.23 REMARK 500 LEU A 94 70.53 -119.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RLG A 201 DBREF 6VUB A 44 168 UNP O60885 BRD4_HUMAN 44 168 SEQADV 6VUB SER A 43 UNP O60885 EXPRESSION TAG SEQRES 1 A 126 SER ASN PRO PRO PRO PRO GLU THR SER ASN PRO ASN LYS SEQRES 2 A 126 PRO LYS ARG GLN THR ASN GLN LEU GLN TYR LEU LEU ARG SEQRES 3 A 126 VAL VAL LEU LYS THR LEU TRP LYS HIS GLN PHE ALA TRP SEQRES 4 A 126 PRO PHE GLN GLN PRO VAL ASP ALA VAL LYS LEU ASN LEU SEQRES 5 A 126 PRO ASP TYR TYR LYS ILE ILE LYS THR PRO MET ASP MET SEQRES 6 A 126 GLY THR ILE LYS LYS ARG LEU GLU ASN ASN TYR TYR TRP SEQRES 7 A 126 ASN ALA GLN GLU CYS ILE GLN ASP PHE ASN THR MET PHE SEQRES 8 A 126 THR ASN CYS TYR ILE TYR ASN LYS PRO GLY ASP ASP ILE SEQRES 9 A 126 VAL LEU MET ALA GLU ALA LEU GLU LYS LEU PHE LEU GLN SEQRES 10 A 126 LYS ILE ASN GLU LEU PRO THR GLU GLU HET RLG A 201 13 HETNAM RLG (4R)-1-METHYL-4-PHENYLPYRROLIDIN-2-ONE FORMUL 2 RLG C11 H13 N O FORMUL 3 HOH *248(H2 O) HELIX 1 AA1 THR A 60 VAL A 69 1 10 HELIX 2 AA2 VAL A 69 LYS A 76 1 8 HELIX 3 AA3 ALA A 80 GLN A 84 5 5 HELIX 4 AA4 ASP A 96 ILE A 101 1 6 HELIX 5 AA5 ASP A 106 ASN A 116 1 11 HELIX 6 AA6 ASN A 121 ASN A 140 1 20 HELIX 7 AA7 ASP A 144 ASN A 162 1 19 SITE 1 AC1 5 PHE A 83 LYS A 99 ASN A 140 ILE A 146 SITE 2 AC1 5 HOH A 320 CRYST1 37.619 44.022 78.478 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026582 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022716 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012742 0.00000