HEADER PROTEIN BINDING 15-FEB-20 6VUF TITLE CRYSTAL STRUCTURE OF BRD4 BROMODOMAIN 1 WITH N-METHYLPYRROLIDIN-2-ONE TITLE 2 (NMP) DERIVATIVE 7H (4-(1-METHYL-5-OXOPYRROLIDIN-3-YL)-N- TITLE 3 PROPYLBENZENESULFONAMIDE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BROMODOMAIN 1 (UNP RESIDUES 44-168); COMPND 5 SYNONYM: PROTEIN HUNK1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD4, HUNK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28(A) KEYWDS BRD4 BD1, BROMODOMAIN, NMP, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR O.V.ILYICHOVA,M.J.SCANLON,P.E.THOMPSON REVDAT 3 11-OCT-23 6VUF 1 REMARK REVDAT 2 18-MAR-20 6VUF 1 JRNL REVDAT 1 26-FEB-20 6VUF 0 JRNL AUTH J.P.HILTON-PROCTOR,O.ILYICHOVA,Z.ZHENG,I.G.JENNINGS, JRNL AUTH 2 R.W.JOHNSTONE,J.SHORTT,S.J.MOUNTFORD,M.J.SCANLON, JRNL AUTH 3 P.E.THOMPSON JRNL TITL SUBSTITUTED 1-METHYL-4-PHENYLPYRROLIDIN-2-ONES - JRNL TITL 2 FRAGMENT-BASED DESIGN OF N-METHYLPYRROLIDONE-DERIVED JRNL TITL 3 BROMODOMAIN INHIBITORS. JRNL REF EUR.J.MED.CHEM. V. 191 12120 2020 JRNL REFN ISSN 0223-5234 JRNL PMID 32120339 JRNL DOI 10.1016/J.EJMECH.2020.112120 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 34946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1770 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.2700 - 3.7400 1.00 2647 129 0.1635 0.2004 REMARK 3 2 3.7400 - 2.9700 1.00 2570 148 0.1715 0.2174 REMARK 3 3 2.9700 - 2.5900 1.00 2595 124 0.1958 0.2729 REMARK 3 4 2.5900 - 2.3500 1.00 2576 136 0.2094 0.2300 REMARK 3 5 2.3500 - 2.1900 0.96 2498 133 0.2720 0.3607 REMARK 3 6 2.1900 - 2.0600 1.00 2561 149 0.2052 0.2465 REMARK 3 7 2.0600 - 1.9500 1.00 2565 133 0.2341 0.2896 REMARK 3 8 1.9500 - 1.8700 0.93 2407 130 0.3647 0.4465 REMARK 3 9 1.8700 - 1.8000 1.00 2545 140 0.2375 0.3077 REMARK 3 10 1.8000 - 1.7300 1.00 2586 131 0.2375 0.2476 REMARK 3 11 1.7300 - 1.6800 1.00 2561 136 0.2556 0.3222 REMARK 3 12 1.6800 - 1.6300 1.00 2574 141 0.2588 0.3316 REMARK 3 13 1.6300 - 1.5900 0.97 2491 140 0.3068 0.3551 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.253 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.112 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2228 REMARK 3 ANGLE : 0.951 3053 REMARK 3 CHIRALITY : 0.048 328 REMARK 3 PLANARITY : 0.006 393 REMARK 3 DIHEDRAL : 5.809 1897 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1750 -21.3901 22.4176 REMARK 3 T TENSOR REMARK 3 T11: 0.2453 T22: 0.1330 REMARK 3 T33: 0.1519 T12: -0.0053 REMARK 3 T13: 0.0048 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.5008 L22: 1.2581 REMARK 3 L33: 1.7077 L12: -0.3117 REMARK 3 L13: 0.1621 L23: 1.2958 REMARK 3 S TENSOR REMARK 3 S11: 0.0299 S12: 0.1040 S13: 0.0203 REMARK 3 S21: 0.2831 S22: -0.0036 S23: 0.0106 REMARK 3 S31: -0.2296 S32: -0.1793 S33: -0.0707 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2054 -14.0896 8.2549 REMARK 3 T TENSOR REMARK 3 T11: 0.1376 T22: 0.1900 REMARK 3 T33: 0.1429 T12: 0.0582 REMARK 3 T13: 0.0498 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 4.2237 L22: 4.7931 REMARK 3 L33: 9.0534 L12: 1.5849 REMARK 3 L13: 5.2768 L23: -0.9913 REMARK 3 S TENSOR REMARK 3 S11: -0.3146 S12: -0.2513 S13: -0.0160 REMARK 3 S21: -0.0071 S22: 0.0858 S23: -0.0466 REMARK 3 S31: -0.0737 S32: -0.0358 S33: 0.1950 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0873 -7.8972 24.4195 REMARK 3 T TENSOR REMARK 3 T11: 0.1641 T22: 0.1028 REMARK 3 T33: 0.1128 T12: 0.0108 REMARK 3 T13: -0.0032 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.2496 L22: 1.7040 REMARK 3 L33: 2.0112 L12: 0.1392 REMARK 3 L13: -0.4442 L23: 1.3863 REMARK 3 S TENSOR REMARK 3 S11: -0.1079 S12: -0.0576 S13: 0.0596 REMARK 3 S21: 0.0858 S22: 0.1503 S23: -0.0662 REMARK 3 S31: 0.3467 S32: 0.1843 S33: -0.0559 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6405 -3.4831 20.6335 REMARK 3 T TENSOR REMARK 3 T11: 0.1154 T22: 0.1315 REMARK 3 T33: 0.0776 T12: -0.0216 REMARK 3 T13: -0.0033 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 2.4911 L22: 6.3264 REMARK 3 L33: 3.7591 L12: -2.0107 REMARK 3 L13: -2.0701 L23: 3.1729 REMARK 3 S TENSOR REMARK 3 S11: 0.0715 S12: 0.2503 S13: 0.0346 REMARK 3 S21: -0.2843 S22: -0.1387 S23: 0.1336 REMARK 3 S31: -0.1617 S32: -0.2420 S33: 0.0854 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6239 1.2629 14.3967 REMARK 3 T TENSOR REMARK 3 T11: 0.1248 T22: 0.1208 REMARK 3 T33: 0.1093 T12: -0.0101 REMARK 3 T13: -0.0002 T23: 0.0411 REMARK 3 L TENSOR REMARK 3 L11: 1.4303 L22: 7.6090 REMARK 3 L33: 8.9503 L12: 0.1646 REMARK 3 L13: 0.6463 L23: 7.6191 REMARK 3 S TENSOR REMARK 3 S11: -0.0830 S12: 0.1714 S13: 0.0923 REMARK 3 S21: -0.1091 S22: -0.1246 S23: 0.0275 REMARK 3 S31: -0.0204 S32: 0.3104 S33: 0.1564 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3848 -12.4729 1.1654 REMARK 3 T TENSOR REMARK 3 T11: 0.1619 T22: 0.2878 REMARK 3 T33: 0.1759 T12: -0.0058 REMARK 3 T13: 0.0758 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 7.4598 L22: 6.2222 REMARK 3 L33: 5.6231 L12: 6.4700 REMARK 3 L13: 4.3300 L23: 3.6240 REMARK 3 S TENSOR REMARK 3 S11: -0.3073 S12: 0.4427 S13: -0.1141 REMARK 3 S21: -0.8611 S22: 0.2350 S23: -0.5507 REMARK 3 S31: 0.0605 S32: -0.1066 S33: 0.0331 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2080 22.4837 0.8624 REMARK 3 T TENSOR REMARK 3 T11: 0.1727 T22: 0.1019 REMARK 3 T33: 0.1413 T12: 0.0050 REMARK 3 T13: 0.0091 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 1.0688 L22: 2.4607 REMARK 3 L33: 1.3919 L12: -0.6963 REMARK 3 L13: -0.0797 L23: -0.2663 REMARK 3 S TENSOR REMARK 3 S11: -0.0814 S12: -0.0579 S13: 0.1055 REMARK 3 S21: 0.2784 S22: 0.1301 S23: 0.0350 REMARK 3 S31: -0.0926 S32: -0.0134 S33: -0.0741 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 61 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9105 15.2362 15.1630 REMARK 3 T TENSOR REMARK 3 T11: 0.3295 T22: 0.2082 REMARK 3 T33: 0.1063 T12: 0.0405 REMARK 3 T13: -0.0622 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 6.8499 L22: 3.8088 REMARK 3 L33: 6.9997 L12: -1.8813 REMARK 3 L13: -5.8943 L23: 1.9013 REMARK 3 S TENSOR REMARK 3 S11: -0.3334 S12: -0.7440 S13: 0.2047 REMARK 3 S21: 0.7054 S22: 0.4882 S23: -0.4324 REMARK 3 S31: -0.1187 S32: 0.3841 S33: -0.2007 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 69 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3432 7.1786 8.2587 REMARK 3 T TENSOR REMARK 3 T11: 0.1404 T22: 0.1204 REMARK 3 T33: 0.1309 T12: 0.0406 REMARK 3 T13: -0.0361 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 2.7744 L22: 5.3413 REMARK 3 L33: 6.1076 L12: -0.2689 REMARK 3 L13: -2.5570 L23: 3.9119 REMARK 3 S TENSOR REMARK 3 S11: 0.2406 S12: -0.1044 S13: -0.0950 REMARK 3 S21: 0.3149 S22: 0.1977 S23: -0.9816 REMARK 3 S31: 0.2442 S32: -0.2785 S33: -0.2175 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 77 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7381 2.6624 -6.5296 REMARK 3 T TENSOR REMARK 3 T11: 0.0645 T22: 0.1013 REMARK 3 T33: 0.1213 T12: 0.0312 REMARK 3 T13: 0.0021 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.6553 L22: 0.7044 REMARK 3 L33: 2.5375 L12: 0.4893 REMARK 3 L13: 0.6254 L23: -0.6539 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: 0.1291 S13: -0.2314 REMARK 3 S21: -0.0646 S22: -0.0159 S23: 0.0257 REMARK 3 S31: 0.0975 S32: 0.1917 S33: 0.0009 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 97 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8730 11.8853 -2.0323 REMARK 3 T TENSOR REMARK 3 T11: 0.0824 T22: 0.1152 REMARK 3 T33: 0.0860 T12: 0.0235 REMARK 3 T13: 0.0038 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 1.3998 L22: 3.3852 REMARK 3 L33: 3.8670 L12: 1.8840 REMARK 3 L13: 1.9030 L23: 2.8095 REMARK 3 S TENSOR REMARK 3 S11: -0.0501 S12: 0.0667 S13: 0.0671 REMARK 3 S21: 0.0253 S22: 0.0149 S23: 0.0023 REMARK 3 S31: -0.1304 S32: -0.0121 S33: -0.0032 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 116 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3522 11.6127 5.5008 REMARK 3 T TENSOR REMARK 3 T11: 0.1506 T22: 0.1183 REMARK 3 T33: 0.1145 T12: 0.0513 REMARK 3 T13: 0.0212 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 0.5474 L22: 5.4065 REMARK 3 L33: 2.2202 L12: 0.8688 REMARK 3 L13: 0.4528 L23: 1.8125 REMARK 3 S TENSOR REMARK 3 S11: -0.0328 S12: -0.0003 S13: 0.0490 REMARK 3 S21: 0.2582 S22: 0.0422 S23: 0.1088 REMARK 3 S31: -0.1784 S32: -0.1711 S33: 0.0128 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 140 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1650 -6.7287 -3.3659 REMARK 3 T TENSOR REMARK 3 T11: 0.1178 T22: 0.1549 REMARK 3 T33: 0.3149 T12: -0.0458 REMARK 3 T13: 0.0214 T23: 0.0321 REMARK 3 L TENSOR REMARK 3 L11: 6.5686 L22: 6.1127 REMARK 3 L33: 5.0614 L12: 1.6527 REMARK 3 L13: -5.7448 L23: -1.0113 REMARK 3 S TENSOR REMARK 3 S11: -0.2696 S12: -0.0638 S13: -1.0466 REMARK 3 S21: -0.2221 S22: 0.1700 S23: 0.8899 REMARK 3 S31: 0.7011 S32: -0.5646 S33: 0.1672 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5143 2.2861 11.4657 REMARK 3 T TENSOR REMARK 3 T11: 0.1343 T22: 0.1236 REMARK 3 T33: 0.1198 T12: 0.0466 REMARK 3 T13: -0.0085 T23: 0.0248 REMARK 3 L TENSOR REMARK 3 L11: 2.5500 L22: 4.8115 REMARK 3 L33: 5.0874 L12: 0.5233 REMARK 3 L13: 0.4712 L23: 3.9047 REMARK 3 S TENSOR REMARK 3 S11: -0.0619 S12: -0.2475 S13: 0.0064 REMARK 3 S21: 0.5141 S22: 0.0577 S23: -0.0235 REMARK 3 S31: 0.2291 S32: -0.1394 S33: 0.0109 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VUF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000246437. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35273 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 46.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.64200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5DW2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM NITRATE, 35% PEG3350, 6% REMARK 280 V/V ETHYLENE GLYCOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.60250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 168 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 68 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 168 CG CD OE1 OE2 REMARK 470 GLN B 64 CG CD OE1 NE2 REMARK 470 LYS B 102 CG CD CE NZ REMARK 470 LYS B 112 CD CE NZ REMARK 470 GLU B 167 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 412 O HOH B 483 2545 2.14 REMARK 500 O HOH A 351 O HOH B 410 1556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 52 94.19 -164.43 REMARK 500 VAL A 69 -65.06 -101.53 REMARK 500 LEU A 94 71.05 -117.15 REMARK 500 ASN B 52 92.19 -164.54 REMARK 500 LEU B 94 73.84 -119.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 482 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A 483 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH A 484 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH B 541 DISTANCE = 6.58 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 RLV B 201 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RLV A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RLV B 201 DBREF 6VUF A 44 168 UNP O60885 BRD4_HUMAN 44 168 DBREF 6VUF B 44 168 UNP O60885 BRD4_HUMAN 44 168 SEQADV 6VUF SER A 43 UNP O60885 EXPRESSION TAG SEQADV 6VUF SER B 43 UNP O60885 EXPRESSION TAG SEQRES 1 A 126 SER ASN PRO PRO PRO PRO GLU THR SER ASN PRO ASN LYS SEQRES 2 A 126 PRO LYS ARG GLN THR ASN GLN LEU GLN TYR LEU LEU ARG SEQRES 3 A 126 VAL VAL LEU LYS THR LEU TRP LYS HIS GLN PHE ALA TRP SEQRES 4 A 126 PRO PHE GLN GLN PRO VAL ASP ALA VAL LYS LEU ASN LEU SEQRES 5 A 126 PRO ASP TYR TYR LYS ILE ILE LYS THR PRO MET ASP MET SEQRES 6 A 126 GLY THR ILE LYS LYS ARG LEU GLU ASN ASN TYR TYR TRP SEQRES 7 A 126 ASN ALA GLN GLU CYS ILE GLN ASP PHE ASN THR MET PHE SEQRES 8 A 126 THR ASN CYS TYR ILE TYR ASN LYS PRO GLY ASP ASP ILE SEQRES 9 A 126 VAL LEU MET ALA GLU ALA LEU GLU LYS LEU PHE LEU GLN SEQRES 10 A 126 LYS ILE ASN GLU LEU PRO THR GLU GLU SEQRES 1 B 126 SER ASN PRO PRO PRO PRO GLU THR SER ASN PRO ASN LYS SEQRES 2 B 126 PRO LYS ARG GLN THR ASN GLN LEU GLN TYR LEU LEU ARG SEQRES 3 B 126 VAL VAL LEU LYS THR LEU TRP LYS HIS GLN PHE ALA TRP SEQRES 4 B 126 PRO PHE GLN GLN PRO VAL ASP ALA VAL LYS LEU ASN LEU SEQRES 5 B 126 PRO ASP TYR TYR LYS ILE ILE LYS THR PRO MET ASP MET SEQRES 6 B 126 GLY THR ILE LYS LYS ARG LEU GLU ASN ASN TYR TYR TRP SEQRES 7 B 126 ASN ALA GLN GLU CYS ILE GLN ASP PHE ASN THR MET PHE SEQRES 8 B 126 THR ASN CYS TYR ILE TYR ASN LYS PRO GLY ASP ASP ILE SEQRES 9 B 126 VAL LEU MET ALA GLU ALA LEU GLU LYS LEU PHE LEU GLN SEQRES 10 B 126 LYS ILE ASN GLU LEU PRO THR GLU GLU HET RLV A 201 20 HET RLV B 201 19 HETNAM RLV 4-[(3R)-1-METHYL-5-OXOPYRROLIDIN-3-YL]-N-PROPYLBENZENE- HETNAM 2 RLV 1-SULFONAMIDE FORMUL 3 RLV 2(C14 H20 N2 O3 S) FORMUL 5 HOH *425(H2 O) HELIX 1 AA1 THR A 60 VAL A 69 1 10 HELIX 2 AA2 VAL A 69 LYS A 76 1 8 HELIX 3 AA3 ALA A 80 GLN A 84 5 5 HELIX 4 AA4 ASP A 96 ILE A 101 1 6 HELIX 5 AA5 ASP A 106 ASN A 116 1 11 HELIX 6 AA6 ASN A 121 ASN A 140 1 20 HELIX 7 AA7 ASP A 144 GLU A 163 1 20 HELIX 8 AA8 THR B 60 VAL B 69 1 10 HELIX 9 AA9 VAL B 69 TRP B 75 1 7 HELIX 10 AB1 ALA B 80 GLN B 84 5 5 HELIX 11 AB2 ASP B 96 ILE B 101 1 6 HELIX 12 AB3 ASP B 106 ASN B 116 1 11 HELIX 13 AB4 ASN B 121 ASN B 140 1 20 HELIX 14 AB5 ASP B 144 ASN B 162 1 19 SITE 1 AC1 11 PHE A 83 LEU A 92 ASN A 140 ASP A 145 SITE 2 AC1 11 MET A 149 HOH A 332 HOH A 391 HOH A 410 SITE 3 AC1 11 ASP B 96 LYS B 99 ILE B 100 SITE 1 AC2 8 ASP A 96 LYS A 99 TRP B 81 PHE B 83 SITE 2 AC2 8 VAL B 87 LEU B 92 ASN B 140 HOH B 331 CRYST1 36.030 79.205 46.819 90.00 92.82 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027755 0.000000 0.001367 0.00000 SCALE2 0.000000 0.012625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021385 0.00000