HEADER PROTEIN BINDING 15-FEB-20 6VUG TITLE DIABODY BOUND TO A REVERSE TRANSCRIPTASE APTAMER COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: REVERSE TRANSCRIPTASE/RIBONUCLEASE H; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: P66 SUBUNIT, RESIDUES 600-1154; COMPND 5 SYNONYM: GAG-POL POLYPROTEIN, PR160GAG-POL; COMPND 6 EC: 3.4.23.16,2.7.7.49,2.7.7.7,3.1.26.13,3.1.13.2,2.7.7.-,3.1.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: REVERSE TRANSCRIPTASE P51; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: P51 SUBUNIT, RESIDUES 168-595; COMPND 12 EC: 2.7.7.49,3.1.13.2,3.1.26.13; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: LIGHT CHAIN VARIABLE FRAGMENT; COMPND 16 CHAIN: C; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: HEAVY CHAIN VARIABLE FRAGMENT; COMPND 20 CHAIN: D; COMPND 21 ENGINEERED: YES; COMPND 22 MOL_ID: 5; COMPND 23 MOLECULE: DNA (38-MER); COMPND 24 CHAIN: E; COMPND 25 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1; SOURCE 3 ORGANISM_COMMON: HIV-1; SOURCE 4 ORGANISM_TAXID: 11676; SOURCE 5 GENE: GAG-POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 10 ORGANISM_COMMON: HIV-1; SOURCE 11 ORGANISM_TAXID: 11676; SOURCE 12 GENE: POL; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 21 MOL_ID: 4; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_COMMON: HUMAN; SOURCE 24 ORGANISM_TAXID: 9606; SOURCE 25 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 27 MOL_ID: 5; SOURCE 28 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 29 ORGANISM_COMMON: HIV-1; SOURCE 30 ORGANISM_TAXID: 11676; SOURCE 31 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 32 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS APTAMER, PROTEIN BINDING, COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.CHESTERMAN,E.ARNOLD REVDAT 4 11-OCT-23 6VUG 1 REMARK REVDAT 3 16-JUN-21 6VUG 1 JRNL REVDAT 2 10-MAR-21 6VUG 1 JRNL REVDAT 1 17-FEB-21 6VUG 0 JRNL AUTH C.CHESTERMAN,E.ARNOLD JRNL TITL CO-CRYSTALLIZATION WITH DIABODIES: A CASE STUDY FOR THE JRNL TITL 2 INTRODUCTION OF SYNTHETIC SYMMETRY. JRNL REF STRUCTURE V. 29 598 2021 JRNL REFN ISSN 0969-2126 JRNL PMID 33636101 JRNL DOI 10.1016/J.STR.2021.02.001 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 40147 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3640 - 7.2231 1.00 3151 165 0.1910 0.2408 REMARK 3 2 7.2231 - 5.7362 1.00 3026 157 0.2223 0.2481 REMARK 3 3 5.7362 - 5.0120 1.00 3013 158 0.1899 0.2207 REMARK 3 4 5.0120 - 4.5541 1.00 2991 156 0.1684 0.2333 REMARK 3 5 4.5541 - 4.2279 1.00 2981 156 0.1693 0.2209 REMARK 3 6 4.2279 - 3.9787 1.00 2946 154 0.1842 0.2417 REMARK 3 7 3.9787 - 3.7796 1.00 2988 156 0.1858 0.2415 REMARK 3 8 3.7796 - 3.6151 1.00 2943 154 0.2075 0.2621 REMARK 3 9 3.6151 - 3.4760 1.00 2954 154 0.2196 0.2501 REMARK 3 10 3.4760 - 3.3560 1.00 2940 154 0.2248 0.3272 REMARK 3 11 3.3560 - 3.2511 0.97 2855 150 0.2447 0.3036 REMARK 3 12 3.2511 - 3.1582 0.81 2372 124 0.2598 0.3179 REMARK 3 13 3.1582 - 3.0751 0.59 1743 90 0.2791 0.3384 REMARK 3 14 3.0751 - 3.0001 0.43 1250 66 0.3076 0.4089 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VUG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000246953. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44085 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.02600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5D3G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M AMMONIUM SULFATE 0.1 M HEPES PH REMARK 280 7.8 0.1 M NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.85550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 105.85550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.93800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 119.05150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.93800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 119.05150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 105.85550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.93800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 119.05150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 105.85550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.93800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 119.05150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 53400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -225.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 1 REMARK 465 GLY A 51 REMARK 465 PRO A 52 REMARK 465 GLU A 53 REMARK 465 LYS A 66 REMARK 465 ASP A 67 REMARK 465 SER A 68 REMARK 465 THR A 69 REMARK 465 PRO A 133 REMARK 465 SER A 134 REMARK 465 ILE A 135 REMARK 465 ASN A 136 REMARK 465 ASN A 137 REMARK 465 GLU A 138 REMARK 465 THR A 139 REMARK 465 PRO A 140 REMARK 465 GLY A 141 REMARK 465 LYS A 219 REMARK 465 GLY A 285 REMARK 465 THR A 286 REMARK 465 SER A 553 REMARK 465 ALA A 554 REMARK 465 GLY A 555 REMARK 465 MET B -15 REMARK 465 ALA B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 ALA B -7 REMARK 465 LEU B -6 REMARK 465 GLU B -5 REMARK 465 VAL B -4 REMARK 465 LEU B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 GLY B 0 REMARK 465 PRO B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 VAL B 90 REMARK 465 GLN B 91 REMARK 465 LEU B 92 REMARK 465 GLY B 93 REMARK 465 ILE B 94 REMARK 465 GLY C 125 REMARK 465 GLY C 126 REMARK 465 GLY C 237 REMARK 465 SER C 238 REMARK 465 HIS C 239 REMARK 465 HIS C 240 REMARK 465 HIS C 241 REMARK 465 HIS C 242 REMARK 465 HIS C 243 REMARK 465 HIS C 244 REMARK 465 DT E -4 REMARK 465 DA E -3 REMARK 465 DA E -2 REMARK 465 DT E -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 2 CG1 CG2 CD1 REMARK 470 SER A 3 OG REMARK 470 ILE A 5 CG1 CG2 CD1 REMARK 470 GLU A 6 CG CD OE1 OE2 REMARK 470 VAL A 8 CG1 CG2 REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 LEU A 12 CG CD1 CD2 REMARK 470 LYS A 13 CE NZ REMARK 470 MET A 16 CG SD CE REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 VAL A 21 CG1 CG2 REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 GLN A 23 CG CD OE1 NE2 REMARK 470 LEU A 26 CG CD1 CD2 REMARK 470 THR A 27 OG1 CG2 REMARK 470 GLU A 28 CG CD OE1 OE2 REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 ILE A 31 CG1 CG2 CD1 REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 LEU A 34 CG CD1 CD2 REMARK 470 VAL A 35 CG1 CG2 REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 ILE A 37 CG1 CG2 CD1 REMARK 470 CYS A 38 SG REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 ILE A 50 CG1 CG2 CD1 REMARK 470 ASN A 54 CG OD1 ND2 REMARK 470 THR A 58 OG1 CG2 REMARK 470 PRO A 59 CG CD REMARK 470 PHE A 61 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 63 CG1 CG2 CD1 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 ARG A 72 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 LEU A 74 CG CD1 CD2 REMARK 470 VAL A 75 CG1 CG2 REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 ARG A 83 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 SER A 105 OG REMARK 470 ASP A 113 CG OD1 OD2 REMARK 470 VAL A 118 CG1 CG2 REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 LYS A 126 CE NZ REMARK 470 ILE A 132 CG1 CG2 CD1 REMARK 470 ILE A 142 CG1 CG2 CD1 REMARK 470 ARG A 143 CZ NH1 NH2 REMARK 470 LYS A 166 NZ REMARK 470 GLU A 169 CG CD OE1 OE2 REMARK 470 LYS A 172 CG CD CE NZ REMARK 470 LYS A 173 CG CD CE NZ REMARK 470 GLN A 174 CG CD OE1 NE2 REMARK 470 GLU A 194 CG CD OE1 OE2 REMARK 470 ILE A 195 CG1 CG2 CD1 REMARK 470 ARG A 199 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 201 CE NZ REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 LEU A 205 CG CD1 CD2 REMARK 470 GLN A 207 CG CD OE1 NE2 REMARK 470 LEU A 210 CG CD1 CD2 REMARK 470 ARG A 211 CG CD NE CZ NH1 NH2 REMARK 470 THR A 215 OG1 CG2 REMARK 470 ASP A 218 CG OD1 OD2 REMARK 470 LYS A 220 CG CD CE NZ REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 ASP A 237 CG OD1 OD2 REMARK 470 LYS A 238 CG CD CE NZ REMARK 470 VAL A 245 CG1 CG2 REMARK 470 GLU A 248 CG CD OE1 OE2 REMARK 470 LYS A 249 CD CE NZ REMARK 470 SER A 251 OG REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 LYS A 281 NZ REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 VAL A 292 CG1 CG2 REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 LYS A 311 CG CD CE NZ REMARK 470 GLU A 312 CG CD OE1 OE2 REMARK 470 LYS A 323 NZ REMARK 470 GLN A 334 CD OE1 NE2 REMARK 470 GLU A 344 CG CD OE1 OE2 REMARK 470 ARG A 358 NE CZ NH1 NH2 REMARK 470 LYS A 388 CG CD CE NZ REMARK 470 LYS A 390 CE NZ REMARK 470 GLU A 396 CG CD OE1 OE2 REMARK 470 LYS A 424 NZ REMARK 470 LYS A 431 CG CD CE NZ REMARK 470 GLU A 432 CG CD OE1 OE2 REMARK 470 GLU A 438 CG CD OE1 OE2 REMARK 470 ASN A 447 CG OD1 ND2 REMARK 470 ARG A 448 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 449 CG CD OE1 OE2 REMARK 470 LYS A 451 CG CD CE NZ REMARK 470 LEU A 452 CG CD1 CD2 REMARK 470 LYS A 454 CG CD CE NZ REMARK 470 VAL A 458 CG1 CG2 REMARK 470 ARG A 463 CZ NH1 NH2 REMARK 470 GLN A 464 OE1 NE2 REMARK 470 LYS A 465 CE NZ REMARK 470 VAL A 467 CG1 CG2 REMARK 470 LEU A 469 CG CD1 CD2 REMARK 470 THR A 470 OG1 CG2 REMARK 470 ASN A 471 CG OD1 ND2 REMARK 470 THR A 473 OG1 CG2 REMARK 470 GLU A 516 CG CD OE1 OE2 REMARK 470 GLU A 523 CG CD OE1 OE2 REMARK 470 LYS A 527 CG CD CE NZ REMARK 470 GLU A 529 OE1 OE2 REMARK 470 LYS A 540 CE NZ REMARK 470 GLU A 546 OE1 OE2 REMARK 470 GLN A 547 CG CD OE1 NE2 REMARK 470 LYS A 550 CG CD CE NZ REMARK 470 LEU A 551 CG CD1 CD2 REMARK 470 ILE B 5 CG1 CG2 CD1 REMARK 470 GLU B 6 CG CD OE1 OE2 REMARK 470 LYS B 11 CG CD CE NZ REMARK 470 LYS B 20 CG CD CE NZ REMARK 470 LYS B 22 CG CD CE NZ REMARK 470 LYS B 32 CE NZ REMARK 470 GLU B 36 OE1 OE2 REMARK 470 GLU B 40 CG CD OE1 OE2 REMARK 470 LYS B 43 CG CD CE NZ REMARK 470 LYS B 46 NZ REMARK 470 SER B 48 OG REMARK 470 LYS B 49 CE NZ REMARK 470 LYS B 65 CE NZ REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 GLU B 79 OE1 OE2 REMARK 470 LYS B 82 CE NZ REMARK 470 GLU B 89 CG CD OE1 OE2 REMARK 470 LYS B 104 CG CD CE NZ REMARK 470 ASP B 123 OD1 OD2 REMARK 470 SER B 134 OG REMARK 470 GLN B 161 OE1 NE2 REMARK 470 SER B 162 OG REMARK 470 LYS B 166 CE NZ REMARK 470 LYS B 172 NZ REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 GLN B 174 CD OE1 NE2 REMARK 470 GLU B 203 CD OE1 OE2 REMARK 470 ASP B 218 CG OD1 OD2 REMARK 470 LYS B 219 CE NZ REMARK 470 LYS B 220 CE NZ REMARK 470 GLU B 248 CG CD OE1 OE2 REMARK 470 LYS B 249 NZ REMARK 470 LYS B 259 CE NZ REMARK 470 LYS B 275 CG CD CE NZ REMARK 470 ARG B 277 NE CZ NH2 REMARK 470 LYS B 281 CE NZ REMARK 470 ARG B 284 NE CZ NH1 NH2 REMARK 470 LYS B 287 NZ REMARK 470 GLU B 291 CG CD OE1 OE2 REMARK 470 GLU B 297 CG CD OE1 OE2 REMARK 470 GLU B 298 CG CD OE1 OE2 REMARK 470 GLU B 312 CG CD OE1 OE2 REMARK 470 HIS B 315 ND1 CE1 NE2 REMARK 470 VAL B 317 CG1 CG2 REMARK 470 GLN B 334 CD OE1 NE2 REMARK 470 LYS B 347 CG CD CE NZ REMARK 470 LYS B 353 NZ REMARK 470 GLU B 370 CG CD OE1 OE2 REMARK 470 LYS B 374 NZ REMARK 470 LYS B 388 NZ REMARK 470 LEU B 422 CG CD1 CD2 REMARK 470 LYS B 424 CE NZ REMARK 470 GLN B 428 CG CD OE1 NE2 REMARK 470 SER C 136 OG REMARK 470 THR C 149 OG1 CG2 REMARK 470 ARG C 153 NE CZ NH1 NH2 REMARK 470 LYS C 171 CD CE NZ REMARK 470 LYS C 222 NZ REMARK 470 LYS C 232 NZ REMARK 470 ILE C 235 CG1 CG2 CD1 REMARK 470 LYS C 236 CG CD CE NZ REMARK 470 MET D 1 CG SD CE REMARK 470 GLU D 2 CG CD OE1 OE2 REMARK 470 SER D 26 OG REMARK 470 SER D 29 OG REMARK 470 LYS D 46 CD CE NZ REMARK 470 ASP D 58 CG OD1 OD2 REMARK 470 LYS D 67 NZ REMARK 470 LYS D 78 NZ REMARK 470 GLU D 91 CG CD OE1 OE2 REMARK 470 SER D 123 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 11 -160.49 -122.69 REMARK 500 THR A 128 38.38 -90.63 REMARK 500 MET A 184 -120.95 58.25 REMARK 500 GLU A 248 76.81 -115.76 REMARK 500 ASP A 250 -73.41 -75.42 REMARK 500 SER A 268 1.29 -69.80 REMARK 500 ILE A 270 -28.29 -143.97 REMARK 500 VAL A 276 -17.64 -143.74 REMARK 500 ALA A 355 43.54 -152.46 REMARK 500 PRO A 412 -175.78 -65.94 REMARK 500 PRO B 140 -177.78 -61.62 REMARK 500 MET B 184 -119.76 59.74 REMARK 500 LEU B 283 40.13 -108.89 REMARK 500 THR B 362 -31.07 -140.30 REMARK 500 SER C 159 -135.68 58.90 REMARK 500 THR C 180 -52.95 65.36 REMARK 500 TYR C 220 19.59 -141.96 REMARK 500 LEU D 51 -70.36 -115.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 303 DBREF 6VUG A 1 555 UNP P03366 POL_HV1B1 600 1154 DBREF1 6VUG B 1 428 UNP A0A076Q3N8_9HIV1 DBREF2 6VUG B A0A076Q3N8 168 595 DBREF 6VUG C 125 244 PDB 6VUG 6VUG 125 244 DBREF 6VUG D 1 124 PDB 6VUG 6VUG 1 124 DBREF 6VUG E -4 33 PDB 6VUG 6VUG -4 33 SEQADV 6VUG SER A 280 UNP P03366 CYS 879 CONFLICT SEQADV 6VUG MET B -15 UNP A0A076Q3N INITIATING METHIONINE SEQADV 6VUG ALA B -14 UNP A0A076Q3N EXPRESSION TAG SEQADV 6VUG HIS B -13 UNP A0A076Q3N EXPRESSION TAG SEQADV 6VUG HIS B -12 UNP A0A076Q3N EXPRESSION TAG SEQADV 6VUG HIS B -11 UNP A0A076Q3N EXPRESSION TAG SEQADV 6VUG HIS B -10 UNP A0A076Q3N EXPRESSION TAG SEQADV 6VUG HIS B -9 UNP A0A076Q3N EXPRESSION TAG SEQADV 6VUG HIS B -8 UNP A0A076Q3N EXPRESSION TAG SEQADV 6VUG ALA B -7 UNP A0A076Q3N EXPRESSION TAG SEQADV 6VUG LEU B -6 UNP A0A076Q3N EXPRESSION TAG SEQADV 6VUG GLU B -5 UNP A0A076Q3N EXPRESSION TAG SEQADV 6VUG VAL B -4 UNP A0A076Q3N EXPRESSION TAG SEQADV 6VUG LEU B -3 UNP A0A076Q3N EXPRESSION TAG SEQADV 6VUG PHE B -2 UNP A0A076Q3N EXPRESSION TAG SEQADV 6VUG GLN B -1 UNP A0A076Q3N EXPRESSION TAG SEQADV 6VUG GLY B 0 UNP A0A076Q3N EXPRESSION TAG SEQADV 6VUG LYS B 172 UNP A0A076Q3N ARG 339 ENGINEERED MUTATION SEQADV 6VUG SER B 280 UNP A0A076Q3N CYS 447 ENGINEERED MUTATION SEQRES 1 A 555 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 A 555 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 A 555 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 A 555 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 A 555 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 A 555 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 A 555 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 A 555 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 A 555 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 A 555 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 A 555 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 A 555 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 A 555 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 A 555 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 A 555 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 A 555 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 A 555 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 A 555 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 A 555 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 A 555 GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU SEQRES 21 A 555 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 A 555 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 A 555 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 A 555 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 A 555 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 A 555 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 A 555 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 A 555 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 A 555 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 A 555 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 A 555 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 A 555 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 A 555 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN LEU SEQRES 34 A 555 GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE TYR VAL SEQRES 35 A 555 ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY LYS ALA SEQRES 36 A 555 GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL VAL PRO SEQRES 37 A 555 LEU THR ASN THR THR ASN GLN LYS THR GLU LEU GLN ALA SEQRES 38 A 555 ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU VAL ASN SEQRES 39 A 555 ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE ILE GLN SEQRES 40 A 555 ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL ASN GLN SEQRES 41 A 555 ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL TYR LEU SEQRES 42 A 555 ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY ASN GLU SEQRES 43 A 555 GLN VAL ASP LYS LEU VAL SER ALA GLY SEQRES 1 B 444 MET ALA HIS HIS HIS HIS HIS HIS ALA LEU GLU VAL LEU SEQRES 2 B 444 PHE GLN GLY PRO ILE SER PRO ILE GLU THR VAL PRO VAL SEQRES 3 B 444 LYS LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN SEQRES 4 B 444 TRP PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU SEQRES 5 B 444 ILE CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS SEQRES 6 B 444 ILE GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA SEQRES 7 B 444 ILE LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL SEQRES 8 B 444 ASP PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP SEQRES 9 B 444 GLU VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS SEQRES 10 B 444 LYS LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA SEQRES 11 B 444 TYR PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR SEQRES 12 B 444 THR ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO SEQRES 13 B 444 GLY ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP SEQRES 14 B 444 LYS GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS SEQRES 15 B 444 ILE LEU GLU PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL SEQRES 16 B 444 ILE TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP SEQRES 17 B 444 LEU GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU SEQRES 18 B 444 ARG GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP SEQRES 19 B 444 LYS LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY SEQRES 20 B 444 TYR GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE SEQRES 21 B 444 VAL LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE SEQRES 22 B 444 GLN LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE SEQRES 23 B 444 TYR PRO GLY ILE LYS VAL ARG GLN LEU SER LYS LEU LEU SEQRES 24 B 444 ARG GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR SEQRES 25 B 444 GLU GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE SEQRES 26 B 444 LEU LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER SEQRES 27 B 444 LYS ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY SEQRES 28 B 444 GLN TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN SEQRES 29 B 444 LEU LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS SEQRES 30 B 444 THR ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS SEQRES 31 B 444 ILE THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO SEQRES 32 B 444 LYS PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR SEQRES 33 B 444 TRP TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU SEQRES 34 B 444 TRP GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP SEQRES 35 B 444 TYR GLN SEQRES 1 C 120 GLY GLY GLY GLY SER ASP ILE GLN MET THR GLN SER PRO SEQRES 2 C 120 SER SER LEU SER ALA SER VAL GLY ASP ARG VAL THR ILE SEQRES 3 C 120 THR CYS ARG ALA SER GLN ASP ILE SER SER TYR LEU ASN SEQRES 4 C 120 TRP TYR GLN GLN LYS PRO GLY LYS ALA PRO LYS LEU LEU SEQRES 5 C 120 ILE TYR TYR THR SER SER LEU HIS SER GLY VAL PRO SER SEQRES 6 C 120 ARG PHE SER GLY SER ARG SER GLY THR ASP PHE THR LEU SEQRES 7 C 120 THR ILE SER SER LEU GLN PRO GLU ASP PHE ALA THR TYR SEQRES 8 C 120 TYR CYS GLN GLN TYR SER LYS PHE PRO TRP THR PHE GLY SEQRES 9 C 120 GLN GLY THR LYS VAL GLU ILE LYS GLY SER HIS HIS HIS SEQRES 10 C 120 HIS HIS HIS SEQRES 1 D 124 MET GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL SEQRES 2 D 124 GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER SEQRES 3 D 124 GLY PHE SER LEU SER THR SER GLY ILE GLY VAL THR TRP SEQRES 4 D 124 VAL ARG GLN ALA PRO GLY LYS GLY LEU GLU TRP LEU ALA SEQRES 5 D 124 THR ILE TRP TRP ASP ASP ASP ASN ARG TYR ALA ASP SER SEQRES 6 D 124 VAL LYS GLY ARG PHE THR ILE SER ALA ASP THR SER LYS SEQRES 7 D 124 ASN THR ALA TYR LEU GLN MET ASN CYS LEU THR ALA GLU SEQRES 8 D 124 ASP THR ALA VAL TYR TYR CYS ALA GLN SER ALA ILE THR SEQRES 9 D 124 SER VAL THR ASP SER ALA MET ASP HIS TRP GLY GLN GLY SEQRES 10 D 124 THR LEU VAL THR VAL SER SER SEQRES 1 E 38 DT DA DA DT DA DC OMC DC OMC DC DC DC DT SEQRES 2 E 38 DT DC DG DG DT DG DC DT DT DT DG DC DA SEQRES 3 E 38 DC DC DG DA DA DG DG DG DG DG DG DG HET OMC E 2 21 HET OMC E 4 21 HET SO4 B 501 5 HET SO4 B 502 5 HET SO4 B 503 5 HET SO4 B 504 5 HET SO4 B 505 5 HET SO4 B 506 5 HET SO4 B 507 5 HET SO4 B 508 5 HET GOL B 509 6 HET SO4 C 301 5 HET SO4 C 302 5 HET SO4 C 303 5 HETNAM OMC O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 OMC 2(C10 H16 N3 O8 P) FORMUL 6 SO4 11(O4 S 2-) FORMUL 14 GOL C3 H8 O3 HELIX 1 AA1 THR A 27 GLY A 45 1 19 HELIX 2 AA2 PHE A 77 LYS A 82 1 6 HELIX 3 AA3 HIS A 96 LEU A 100 5 5 HELIX 4 AA4 ALA A 114 VAL A 118 5 5 HELIX 5 AA5 ASP A 121 TYR A 127 5 7 HELIX 6 AA6 LYS A 154 ASN A 175 1 22 HELIX 7 AA7 GLU A 194 GLY A 213 1 20 HELIX 8 AA8 THR A 253 SER A 268 1 16 HELIX 9 AA9 VAL A 276 LYS A 281 1 6 HELIX 10 AB1 THR A 296 GLU A 312 1 17 HELIX 11 AB2 ASN A 363 TRP A 383 1 21 HELIX 12 AB3 GLN A 394 TYR A 405 1 12 HELIX 13 AB4 THR A 473 ASP A 488 1 16 HELIX 14 AB5 SER A 499 GLN A 507 1 9 HELIX 15 AB6 SER A 515 LYS A 528 1 14 HELIX 16 AB7 GLY A 544 LEU A 551 1 8 HELIX 17 AB8 THR B 27 GLU B 44 1 18 HELIX 18 AB9 PHE B 77 LYS B 82 1 6 HELIX 19 AC1 GLY B 99 LYS B 103 5 5 HELIX 20 AC2 GLY B 112 VAL B 118 5 7 HELIX 21 AC3 ASP B 121 ALA B 129 5 9 HELIX 22 AC4 SER B 134 GLU B 138 5 5 HELIX 23 AC5 LYS B 154 PHE B 160 1 7 HELIX 24 AC6 PHE B 160 ASN B 175 1 16 HELIX 25 AC7 GLY B 196 TRP B 212 1 17 HELIX 26 AC8 PHE B 227 GLY B 231 5 5 HELIX 27 AC9 HIS B 235 TRP B 239 5 5 HELIX 28 AD1 VAL B 254 SER B 268 1 15 HELIX 29 AD2 VAL B 276 LYS B 281 1 6 HELIX 30 AD3 LEU B 282 ARG B 284 5 3 HELIX 31 AD4 THR B 296 GLU B 312 1 17 HELIX 32 AD5 ASN B 363 TRP B 383 1 21 HELIX 33 AD6 GLN B 394 TRP B 402 1 9 HELIX 34 AD7 THR B 403 TRP B 406 5 4 HELIX 35 AD8 GLN C 208 PHE C 212 5 5 HELIX 36 AD9 THR D 89 THR D 93 5 5 SHEET 1 AA1 3 ILE A 47 SER A 48 0 SHEET 2 AA1 3 TYR A 144 TYR A 146 -1 O GLN A 145 N SER A 48 SHEET 3 AA1 3 ALA A 129 PHE A 130 -1 N PHE A 130 O TYR A 144 SHEET 1 AA2 2 VAL A 60 ALA A 62 0 SHEET 2 AA2 2 LYS A 73 VAL A 75 -1 O LEU A 74 N PHE A 61 SHEET 1 AA3 4 VAL A 179 TYR A 183 0 SHEET 2 AA3 4 ASP A 186 SER A 191 -1 O ASP A 186 N TYR A 183 SHEET 3 AA3 4 SER A 105 ASP A 110 -1 N THR A 107 O VAL A 189 SHEET 4 AA3 4 HIS A 221 GLN A 222 -1 O GLN A 222 N VAL A 108 SHEET 1 AA4 3 PHE A 227 TRP A 229 0 SHEET 2 AA4 3 TYR A 232 LEU A 234 -1 O LEU A 234 N PHE A 227 SHEET 3 AA4 3 TRP A 239 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 1 AA5 5 LYS A 347 TYR A 354 0 SHEET 2 AA5 5 TRP A 337 GLU A 344 -1 N ILE A 341 O LYS A 350 SHEET 3 AA5 5 ILE A 326 LYS A 331 -1 N ILE A 326 O TYR A 342 SHEET 4 AA5 5 LYS A 388 LEU A 391 1 O LYS A 390 N ALA A 327 SHEET 5 AA5 5 TRP A 414 PHE A 416 1 O GLU A 415 N PHE A 389 SHEET 1 AA6 2 HIS A 361 THR A 362 0 SHEET 2 AA6 2 LYS A 512 SER A 513 -1 O LYS A 512 N THR A 362 SHEET 1 AA7 5 GLN A 464 THR A 470 0 SHEET 2 AA7 5 LEU A 452 VAL A 458 -1 N GLY A 453 O LEU A 469 SHEET 3 AA7 5 THR A 439 ALA A 446 -1 N ALA A 445 O LYS A 454 SHEET 4 AA7 5 GLU A 492 THR A 497 1 O ASN A 494 N PHE A 440 SHEET 5 AA7 5 LYS A 530 TRP A 535 1 O TYR A 532 N ILE A 495 SHEET 1 AA8 3 ILE B 47 ILE B 50 0 SHEET 2 AA8 3 ILE B 142 TYR B 146 -1 O GLN B 145 N SER B 48 SHEET 3 AA8 3 PHE B 130 ILE B 132 -1 N ILE B 132 O ILE B 142 SHEET 1 AA9 2 VAL B 60 PHE B 61 0 SHEET 2 AA9 2 LEU B 74 VAL B 75 -1 O LEU B 74 N PHE B 61 SHEET 1 AB1 4 VAL B 179 TYR B 183 0 SHEET 2 AB1 4 ASP B 186 SER B 191 -1 O TYR B 188 N TYR B 181 SHEET 3 AB1 4 SER B 105 ASP B 110 -1 N THR B 107 O VAL B 189 SHEET 4 AB1 4 GLU B 233 LEU B 234 -1 O LEU B 234 N VAL B 106 SHEET 1 AB2 2 TRP B 252 THR B 253 0 SHEET 2 AB2 2 VAL B 292 ILE B 293 -1 O ILE B 293 N TRP B 252 SHEET 1 AB3 5 ASN B 348 TYR B 354 0 SHEET 2 AB3 5 GLN B 336 TYR B 342 -1 N TRP B 337 O TYR B 354 SHEET 3 AB3 5 ILE B 326 GLY B 333 -1 N GLN B 330 O THR B 338 SHEET 4 AB3 5 LYS B 388 LEU B 391 1 O LYS B 388 N ALA B 327 SHEET 5 AB3 5 TRP B 414 PHE B 416 1 O GLU B 415 N PHE B 389 SHEET 1 AB4 4 MET C 133 SER C 136 0 SHEET 2 AB4 4 VAL C 148 ALA C 154 -1 O ARG C 153 N THR C 134 SHEET 3 AB4 4 ASP C 199 ILE C 204 -1 O LEU C 202 N ILE C 150 SHEET 4 AB4 4 PHE C 191 SER C 196 -1 N SER C 194 O THR C 201 SHEET 1 AB5 6 SER C 139 ALA C 142 0 SHEET 2 AB5 6 THR C 231 ILE C 235 1 O GLU C 234 N LEU C 140 SHEET 3 AB5 6 THR C 214 GLN C 219 -1 N TYR C 215 O THR C 231 SHEET 4 AB5 6 LEU C 162 GLN C 167 -1 N ASN C 163 O GLN C 218 SHEET 5 AB5 6 LYS C 174 TYR C 178 -1 O LYS C 174 N GLN C 166 SHEET 6 AB5 6 SER C 182 LEU C 183 -1 O SER C 182 N TYR C 178 SHEET 1 AB6 4 SER C 139 ALA C 142 0 SHEET 2 AB6 4 THR C 231 ILE C 235 1 O GLU C 234 N LEU C 140 SHEET 3 AB6 4 THR C 214 GLN C 219 -1 N TYR C 215 O THR C 231 SHEET 4 AB6 4 THR C 226 PHE C 227 -1 O THR C 226 N GLN C 219 SHEET 1 AB7 4 GLN D 4 SER D 8 0 SHEET 2 AB7 4 LEU D 19 SER D 26 -1 O SER D 22 N SER D 8 SHEET 3 AB7 4 THR D 80 MET D 85 -1 O MET D 85 N LEU D 19 SHEET 4 AB7 4 PHE D 70 ASP D 75 -1 N THR D 71 O GLN D 84 SHEET 1 AB8 6 GLY D 11 VAL D 13 0 SHEET 2 AB8 6 THR D 118 VAL D 122 1 O THR D 121 N VAL D 13 SHEET 3 AB8 6 ALA D 94 ILE D 103 -1 N TYR D 96 O THR D 118 SHEET 4 AB8 6 ILE D 35 GLN D 42 -1 N GLY D 36 O SER D 101 SHEET 5 AB8 6 LEU D 48 TRP D 55 -1 O GLU D 49 N ARG D 41 SHEET 6 AB8 6 ASN D 60 TYR D 62 -1 O ARG D 61 N THR D 53 SHEET 1 AB9 4 GLY D 11 VAL D 13 0 SHEET 2 AB9 4 THR D 118 VAL D 122 1 O THR D 121 N VAL D 13 SHEET 3 AB9 4 ALA D 94 ILE D 103 -1 N TYR D 96 O THR D 118 SHEET 4 AB9 4 SER D 109 ASP D 112 -1 O ASP D 112 N GLN D 100 SSBOND 1 CYS C 152 CYS C 217 1555 1555 2.05 SSBOND 2 CYS D 23 CYS D 98 1555 1555 2.04 SSBOND 3 CYS D 87 CYS D 87 1555 3555 2.04 LINK O3' DC E 1 P OMC E 2 1555 1555 1.61 LINK O3' OMC E 2 P DC E 3 1555 1555 1.61 LINK O3' DC E 3 P OMC E 4 1555 1555 1.61 LINK O3' OMC E 4 P DC E 5 1555 1555 1.61 CISPEP 1 PRO A 225 PRO A 226 0 -0.39 CISPEP 2 PRO A 420 PRO A 421 0 1.93 CISPEP 3 PRO B 225 PRO B 226 0 0.03 CISPEP 4 SER C 136 PRO C 137 0 -1.24 CISPEP 5 PHE C 223 PRO C 224 0 -0.86 SITE 1 AC1 5 PRO B 226 ARG B 358 LYS B 366 SER C 159 SITE 2 AC1 5 TYR C 161 SITE 1 AC2 4 GLN B 222 LYS B 223 GLU B 224 ARG D 61 SITE 1 AC3 3 THR B 362 ASN B 363 LYS B 366 SITE 1 AC4 6 GLY B 196 GLN B 197 HIS B 198 ARG B 199 SITE 2 AC4 6 THR D 32 SER D 33 SITE 1 AC5 3 GLU B 233 HIS B 235 TRP B 239 SITE 1 AC6 3 ALA B 98 LYS B 101 LYS B 102 SITE 1 AC7 2 LYS B 353 ARG B 356 SITE 1 AC8 3 SER B 68 THR B 69 LYS B 219 SITE 1 AC9 5 TRP B 239 THR B 240 TYR B 339 LYS B 350 SITE 2 AC9 5 GLU B 378 SITE 1 AD1 2 TYR C 178 THR D 104 SITE 1 AD2 2 GLN C 166 LEU C 176 SITE 1 AD3 2 PRO C 137 SER C 138 CRYST1 85.876 238.103 211.711 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011645 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004200 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004723 0.00000