HEADER RNA 15-FEB-20 6VUH TITLE APO PREQ1 RIBOSWITCH APTAMER GROWN IN MN2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREQ1 RIBOSWITCH; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: CALDANAEROBACTER SUBTERRANEUS SUBSP. SOURCE 4 TENGCONGENSIS; SOURCE 5 ORGANISM_TAXID: 119072 KEYWDS PREQ1, PREQ0, QUEUOSINE, RIBOSOMAL BINDING SITE, APTAMER, METABOLITE, KEYWDS 2 PSEUDOKNOT, H-TYPE, RIBOSWITCH, RNA EXPDTA X-RAY DIFFRACTION AUTHOR J.L.JENKINS,J.E.WEDEKIND REVDAT 5 11-OCT-23 6VUH 1 REMARK REVDAT 4 16-MAR-22 6VUH 1 REMARK REVDAT 3 26-AUG-20 6VUH 1 JRNL LINK REVDAT 2 15-JUL-20 6VUH 1 JRNL REVDAT 1 24-JUN-20 6VUH 0 JRNL AUTH G.M.SCHROEDER,D.DUTTA,C.E.CAVENDER,J.L.JENKINS, JRNL AUTH 2 E.M.PRITCHETT,C.D.BAKER,J.M.ASHTON,D.H.MATHEWS,J.E.WEDEKIND JRNL TITL ANALYSIS OF A PREQ1-I RIBOSWITCH IN EFFECTOR-FREE AND BOUND JRNL TITL 2 STATES REVEALS A METABOLITE-PROGRAMMED NUCLEOBASE-STACKING JRNL TITL 3 SPINE THAT CONTROLS GENE REGULATION. JRNL REF NUCLEIC ACIDS RES. V. 48 8146 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32597951 JRNL DOI 10.1093/NAR/GKAA546 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 28736 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.910 REMARK 3 FREE R VALUE TEST SET COUNT : 2847 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.7800 - 5.4219 0.98 1302 142 0.1549 0.1751 REMARK 3 2 5.4219 - 4.3055 1.00 1320 138 0.1373 0.1619 REMARK 3 3 4.3055 - 3.7618 0.99 1315 141 0.1565 0.1810 REMARK 3 4 3.7618 - 3.4181 1.00 1284 149 0.1574 0.2048 REMARK 3 5 3.4181 - 3.1733 1.00 1351 122 0.1687 0.2177 REMARK 3 6 3.1733 - 2.9863 1.00 1303 156 0.2021 0.2490 REMARK 3 7 2.9863 - 2.8368 0.98 1294 134 0.2651 0.3159 REMARK 3 8 2.8368 - 2.7133 1.00 1296 149 0.2619 0.2907 REMARK 3 9 2.7133 - 2.6089 1.00 1285 140 0.2957 0.2861 REMARK 3 10 2.6089 - 2.5189 1.00 1323 141 0.2834 0.3585 REMARK 3 11 2.5189 - 2.4401 1.00 1309 145 0.2648 0.2789 REMARK 3 12 2.4401 - 2.3704 0.99 1305 146 0.3046 0.3004 REMARK 3 13 2.3704 - 2.3080 0.97 1219 140 0.2929 0.3157 REMARK 3 14 2.3080 - 2.2517 0.99 1343 150 0.2609 0.2468 REMARK 3 15 2.2517 - 2.2005 1.00 1287 143 0.2889 0.3110 REMARK 3 16 2.2005 - 2.1537 1.00 1302 146 0.2824 0.3049 REMARK 3 17 2.1537 - 2.1106 0.99 1325 150 0.2920 0.3748 REMARK 3 18 2.1106 - 2.0708 1.00 1305 142 0.3080 0.2907 REMARK 3 19 2.0708 - 2.0338 0.97 1255 142 0.3520 0.3928 REMARK 3 20 2.0338 - 1.9993 0.89 1166 131 0.3646 0.4220 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 786 REMARK 3 ANGLE : 1.307 1223 REMARK 3 CHIRALITY : 0.050 164 REMARK 3 PLANARITY : 0.013 33 REMARK 3 DIHEDRAL : 12.219 392 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5537 37.6734 27.9617 REMARK 3 T TENSOR REMARK 3 T11: 0.6517 T22: 0.7539 REMARK 3 T33: 0.6213 T12: 0.1438 REMARK 3 T13: 0.0090 T23: -0.0657 REMARK 3 L TENSOR REMARK 3 L11: 0.2531 L22: 0.9078 REMARK 3 L33: 1.0732 L12: 0.0404 REMARK 3 L13: -0.2931 L23: 0.0573 REMARK 3 S TENSOR REMARK 3 S11: -0.1662 S12: 0.0457 S13: -0.2322 REMARK 3 S21: 0.0925 S22: 0.0381 S23: 0.0869 REMARK 3 S31: 0.4721 S32: -0.0738 S33: -0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.1709 37.7747 26.0572 REMARK 3 T TENSOR REMARK 3 T11: 0.6899 T22: 0.7386 REMARK 3 T33: 0.6273 T12: 0.1841 REMARK 3 T13: 0.0484 T23: -0.0576 REMARK 3 L TENSOR REMARK 3 L11: 0.5176 L22: 0.1040 REMARK 3 L33: 0.8788 L12: 0.0939 REMARK 3 L13: -0.0270 L23: 0.2744 REMARK 3 S TENSOR REMARK 3 S11: 0.2163 S12: 0.2743 S13: -0.1275 REMARK 3 S21: -0.2032 S22: 0.0019 S23: -0.4637 REMARK 3 S31: 0.2159 S32: 0.0693 S33: -0.0011 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.0299 41.4233 18.8925 REMARK 3 T TENSOR REMARK 3 T11: 0.8088 T22: 0.9768 REMARK 3 T33: 0.8999 T12: 0.1198 REMARK 3 T13: 0.0836 T23: -0.0522 REMARK 3 L TENSOR REMARK 3 L11: 0.0713 L22: 0.0109 REMARK 3 L33: 0.0014 L12: 0.0294 REMARK 3 L13: -0.0119 L23: -0.0056 REMARK 3 S TENSOR REMARK 3 S11: 0.2068 S12: 0.5241 S13: 1.2682 REMARK 3 S21: -0.0227 S22: 0.1984 S23: 0.3904 REMARK 3 S31: -1.0188 S32: 0.0365 S33: 0.0038 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VUH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000244969. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28736 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.999 REMARK 200 RESOLUTION RANGE LOW (A) : 37.781 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 1.53400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3Q51 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM NA-CACODYLATE PH 7.0, 150 MM REMARK 280 KCL, 19% PEG-MME 2000, 5 MM MNCL2, 2 MM SPERMIDINE-HCL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.84100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.84100 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.84100 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 28.84100 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 28.84100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 28.84100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 210 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A A 19 O5' - P - OP2 ANGL. DEV. = -6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 101 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 5 N7 REMARK 620 2 HOH A 203 O 90.4 REMARK 620 3 HOH A 218 O 89.9 95.9 REMARK 620 4 HOH A 222 O 91.1 177.6 82.3 REMARK 620 5 HOH A 229 O 92.6 88.5 175.0 93.3 REMARK 620 6 HOH A 233 O 178.5 88.2 90.4 90.4 87.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 102 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 8 N7 REMARK 620 2 HOH A 211 O 87.6 REMARK 620 3 HOH A 215 O 89.9 89.1 REMARK 620 4 HOH A 220 O 88.5 92.5 177.7 REMARK 620 5 HOH A 230 O 90.9 176.9 88.2 90.2 REMARK 620 6 HOH A 234 O 176.4 89.3 91.9 89.9 92.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 103 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A 9 OP1 REMARK 620 2 A A 32 OP2 46.9 REMARK 620 3 G A 33 N7 49.3 12.0 REMARK 620 4 HOH A 201 O 48.3 1.4 12.1 REMARK 620 5 HOH A 207 O 56.3 11.6 9.0 10.7 REMARK 620 6 HOH A 217 O 58.2 11.6 17.8 10.2 10.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 105 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 23 OP2 REMARK 620 2 HOH A 227 O 83.2 REMARK 620 3 HOH A 228 O 98.2 108.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 104 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 208 O REMARK 620 2 HOH A 209 O 83.3 REMARK 620 3 HOH A 212 O 65.2 116.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 106 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 213 O REMARK 620 2 HOH A 216 O 70.1 REMARK 620 3 HOH A 216 O 134.3 66.1 REMARK 620 4 HOH A 232 O 159.2 130.3 64.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 106 DBREF 6VUH A 1 33 PDB 6VUH 6VUH 1 33 SEQRES 1 A 33 C U G G G U C G C A G U A SEQRES 2 A 33 A C C C C A G U U A A C A SEQRES 3 A 33 A A A C A A G HET MN A 101 1 HET MN A 102 1 HET MN A 103 1 HET MN A 104 1 HET MN A 105 1 HET MN A 106 1 HETNAM MN MANGANESE (II) ION FORMUL 2 MN 6(MN 2+) FORMUL 8 HOH *34(H2 O) LINK N7 G A 5 MN MN A 101 1555 1555 2.27 LINK N7 G A 8 MN MN A 102 1555 1555 2.17 LINK OP1 C A 9 MN MN A 103 1555 12555 2.16 LINK OP2 A A 23 MN MN A 105 1555 1555 2.30 LINK OP2 A A 32 MN MN A 103 1555 1555 2.19 LINK N7 G A 33 MN MN A 103 1555 1555 2.14 LINK MN MN A 101 O HOH A 203 1555 1555 2.27 LINK MN MN A 101 O HOH A 218 1555 1555 2.37 LINK MN MN A 101 O HOH A 222 1555 1555 2.20 LINK MN MN A 101 O HOH A 229 1555 1555 2.23 LINK MN MN A 101 O HOH A 233 1555 1555 2.19 LINK MN MN A 102 O HOH A 211 1555 1555 2.35 LINK MN MN A 102 O HOH A 215 1555 1555 1.97 LINK MN MN A 102 O HOH A 220 1555 1555 2.03 LINK MN MN A 102 O HOH A 230 1555 1555 2.28 LINK MN MN A 102 O HOH A 234 1555 1555 2.20 LINK MN MN A 103 O HOH A 201 1555 1555 2.23 LINK MN MN A 103 O HOH A 207 1555 1555 2.22 LINK MN MN A 103 O HOH A 217 1555 12555 2.11 LINK MN MN A 104 O HOH A 208 1555 1555 2.31 LINK MN MN A 104 O HOH A 209 1555 1555 2.33 LINK MN MN A 104 O HOH A 212 1555 1555 2.42 LINK MN MN A 105 O HOH A 227 1555 1555 2.27 LINK MN MN A 105 O HOH A 228 1555 1555 2.75 LINK MN MN A 106 O HOH A 213 1555 1555 2.33 LINK MN MN A 106 O HOH A 216 1555 1555 2.37 LINK MN MN A 106 O HOH A 216 1555 7556 2.42 LINK MN MN A 106 O HOH A 232 1555 7556 2.63 SITE 1 AC1 6 G A 5 HOH A 203 HOH A 218 HOH A 222 SITE 2 AC1 6 HOH A 229 HOH A 233 SITE 1 AC2 6 G A 8 HOH A 211 HOH A 215 HOH A 220 SITE 2 AC2 6 HOH A 230 HOH A 234 SITE 1 AC3 6 C A 9 A A 32 G A 33 HOH A 201 SITE 2 AC3 6 HOH A 207 HOH A 217 SITE 1 AC4 5 A A 13 A A 14 HOH A 208 HOH A 209 SITE 2 AC4 5 HOH A 212 SITE 1 AC5 3 A A 23 HOH A 227 HOH A 228 SITE 1 AC6 3 HOH A 213 HOH A 216 HOH A 232 CRYST1 115.422 115.422 57.682 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008664 0.005002 0.000000 0.00000 SCALE2 0.000000 0.010004 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017336 0.00000