data_6VUI # _entry.id 6VUI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6VUI pdb_00006vui 10.2210/pdb6vui/pdb WWPDB D_1000244970 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'Same riboswitch without MnCl2' 3Q50 unspecified PDB 'Riboswitch APO state without MnCl2' 3Q51 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6VUI _pdbx_database_status.recvd_initial_deposition_date 2020-02-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Jenkins, J.L.' 1 0000-0003-2548-3275 'Wedekind, J.E.' 2 0000-0002-4269-4229 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 48 _citation.language ? _citation.page_first 8146 _citation.page_last 8164 _citation.title ;Analysis of a preQ1-I riboswitch in effector-free and bound states reveals a metabolite-programmed nucleobase-stacking spine that controls gene regulation. ; _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkaa546 _citation.pdbx_database_id_PubMed 32597951 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schroeder, G.M.' 1 ? primary 'Dutta, D.' 2 ? primary 'Cavender, C.E.' 3 ? primary 'Jenkins, J.L.' 4 ? primary 'Pritchett, E.M.' 5 ? primary 'Baker, C.D.' 6 ? primary 'Ashton, J.M.' 7 ? primary 'Mathews, D.H.' 8 ? primary 'Wedekind, J.E.' 9 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6VUI _cell.details ? _cell.formula_units_Z ? _cell.length_a 112.309 _cell.length_a_esd ? _cell.length_b 112.309 _cell.length_b_esd ? _cell.length_c 59.385 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VUI _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'PREQ1 RIBOSWITCH' 10599.417 1 ? ? ? ? 2 non-polymer syn 7-DEAZA-7-AMINOMETHYL-GUANINE 179.179 1 ? ? ? ? 3 non-polymer syn 'MANGANESE (II) ION' 54.938 6 ? ? ? ? 4 water nat water 18.015 21 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CUGGGUCGCAGUAACCCCAGUUAACAAAACAAG _entity_poly.pdbx_seq_one_letter_code_can CUGGGUCGCAGUAACCCCAGUUAACAAAACAAG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 U n 1 3 G n 1 4 G n 1 5 G n 1 6 U n 1 7 C n 1 8 G n 1 9 C n 1 10 A n 1 11 G n 1 12 U n 1 13 A n 1 14 A n 1 15 C n 1 16 C n 1 17 C n 1 18 C n 1 19 A n 1 20 G n 1 21 U n 1 22 U n 1 23 A n 1 24 A n 1 25 C n 1 26 A n 1 27 A n 1 28 A n 1 29 A n 1 30 C n 1 31 A n 1 32 A n 1 33 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 33 _pdbx_entity_src_syn.organism_scientific 'Caldanaerobacter subterraneus subsp. tengcongensis' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 119072 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6VUI _struct_ref.pdbx_db_accession 6VUI _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6VUI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 33 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6VUI _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 33 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 33 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PRF non-polymer . 7-DEAZA-7-AMINOMETHYL-GUANINE ? 'C7 H9 N5 O' 179.179 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6VUI _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 5.10 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 75.88 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '50 mM Na-cacodylate pH 7.0, 150 mM KCl, 22% PEG-MME 2000, 5 mM MnCl2, 2 mM Spermidine-HCl' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-01-27 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.699 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRL BEAMLINE BL12-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.699 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL12-2 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6VUI _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.68 _reflns.d_resolution_low 37.625 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 11709 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.5 _reflns.pdbx_Rmerge_I_obs 0.103 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.041 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.985 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.68 _reflns_shell.d_res_low 2.81 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.5 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 843 _reflns_shell.percent_possible_all 99.5 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.276 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.514 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.776 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 117.300 _refine.B_iso_mean 78.5754 _refine.B_iso_min 53.100 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6VUI _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.6810 _refine.ls_d_res_low 37.6250 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 11709 _refine.ls_number_reflns_R_free 1141 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.4400 _refine.ls_percent_reflns_R_free 9.7400 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1776 _refine.ls_R_factor_R_free 0.2016 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1751 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_starting_model 3Q50 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 21.6800 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.5100 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.6810 _refine_hist.d_res_low 37.6250 _refine_hist.number_atoms_solvent 21 _refine_hist.number_atoms_total 751 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 33 _refine_hist.pdbx_B_iso_mean_ligand 69.11 _refine_hist.pdbx_B_iso_mean_solvent 63.71 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 702 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.003 ? ? 800 'X-RAY DIFFRACTION' ? f_angle_d 0.753 ? ? 1243 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 14.292 ? ? 393 'X-RAY DIFFRACTION' ? f_chiral_restr 0.035 ? ? 164 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 34 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.6811 2.8031 . . 141 1290 97.0000 . . . 0.5265 0.0000 0.5363 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8031 2.9508 . . 146 1319 100.0000 . . . 0.3751 0.0000 0.3396 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9508 3.1356 . . 149 1318 100.0000 . . . 0.2363 0.0000 0.2121 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.1356 3.3776 . . 133 1328 100.0000 . . . 0.2057 0.0000 0.1911 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.3776 3.7172 . . 143 1338 100.0000 . . . 0.1883 0.0000 0.1450 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.7172 4.2545 . . 143 1322 100.0000 . . . 0.1818 0.0000 0.1583 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.2545 5.3577 . . 148 1315 100.0000 . . . 0.1628 0.0000 0.1421 . . . . . . . . . . . 'X-RAY DIFFRACTION' 5.3577 37.62 . . 138 1338 99.0000 . . . 0.1810 0.0000 0.1531 . . . . . . . . . . . # _struct.entry_id 6VUI _struct.title 'Metabolite-bound PreQ1 riboswitch with Mn2+' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6VUI _struct_keywords.text 'PREQ1, PREQ0, QUEUOSINE, RIBOSOMAL BINDING SITE, APTAMER, METABOLITE, PSEUDOKNOT, H-TYPE, RIBOSWITCH, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 4 N7 ? ? ? 1_555 E MN . MN ? ? A G 4 A MN 104 1_555 ? ? ? ? ? ? ? 2.427 ? ? metalc2 metalc ? ? A G 8 N7 ? ? ? 1_555 C MN . MN ? ? A G 8 A MN 102 1_555 ? ? ? ? ? ? ? 2.145 ? ? metalc3 metalc ? ? A A 23 OP2 ? ? ? 1_555 F MN . MN ? ? A A 23 A MN 105 1_555 ? ? ? ? ? ? ? 2.114 ? ? metalc4 metalc ? ? A A 32 OP2 ? ? ? 1_555 D MN . MN ? ? A A 32 A MN 103 1_555 ? ? ? ? ? ? ? 1.873 ? ? metalc5 metalc ? ? A A 32 OP1 ? ? ? 1_555 H MN . MN ? ? A A 32 A MN 107 1_555 ? ? ? ? ? ? ? 2.722 ? ? metalc6 metalc ? ? A G 33 N7 ? ? ? 1_555 D MN . MN ? ? A G 33 A MN 103 1_555 ? ? ? ? ? ? ? 2.004 ? ? metalc7 metalc ? ? A G 33 OP2 ? ? ? 1_555 H MN . MN ? ? A G 33 A MN 107 1_555 ? ? ? ? ? ? ? 2.050 ? ? metalc8 metalc ? ? C MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 102 A HOH 202 1_555 ? ? ? ? ? ? ? 2.150 ? ? metalc9 metalc ? ? C MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 102 A HOH 208 1_555 ? ? ? ? ? ? ? 2.009 ? ? metalc10 metalc ? ? C MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 102 A HOH 209 1_555 ? ? ? ? ? ? ? 2.105 ? ? metalc11 metalc ? ? C MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 102 A HOH 211 1_555 ? ? ? ? ? ? ? 2.139 ? ? metalc12 metalc ? ? C MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 102 A HOH 220 1_555 ? ? ? ? ? ? ? 2.078 ? ? metalc13 metalc ? ? D MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 103 A HOH 203 1_555 ? ? ? ? ? ? ? 2.098 ? ? metalc14 metalc ? ? D MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 103 A HOH 204 1_555 ? ? ? ? ? ? ? 2.143 ? ? metalc15 metalc ? ? D MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 103 A HOH 206 1_555 ? ? ? ? ? ? ? 2.141 ? ? metalc16 metalc ? ? D MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 103 A HOH 207 1_555 ? ? ? ? ? ? ? 2.139 ? ? metalc17 metalc ? ? E MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 104 A HOH 205 1_555 ? ? ? ? ? ? ? 2.160 ? ? metalc18 metalc ? ? E MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 104 A HOH 212 1_555 ? ? ? ? ? ? ? 2.056 ? ? metalc19 metalc ? ? E MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 104 A HOH 213 1_555 ? ? ? ? ? ? ? 2.164 ? ? metalc20 metalc ? ? E MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 104 A HOH 216 1_555 ? ? ? ? ? ? ? 2.365 ? ? metalc21 metalc ? ? E MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 104 A HOH 218 1_555 ? ? ? ? ? ? ? 2.111 ? ? metalc22 metalc ? ? F MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 105 A HOH 210 1_555 ? ? ? ? ? ? ? 2.344 ? ? metalc23 metalc ? ? F MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 105 A HOH 217 1_555 ? ? ? ? ? ? ? 2.319 ? ? metalc24 metalc ? ? G MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 106 A HOH 201 1_555 ? ? ? ? ? ? ? 2.010 ? ? metalc25 metalc ? ? G MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 106 A HOH 201 7_556 ? ? ? ? ? ? ? 2.010 ? ? metalc26 metalc ? ? G MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 106 A HOH 219 1_555 ? ? ? ? ? ? ? 1.949 ? ? metalc27 metalc ? ? G MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 106 A HOH 219 7_556 ? ? ? ? ? ? ? 1.949 ? ? metalc28 metalc ? ? G MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 106 A HOH 221 1_555 ? ? ? ? ? ? ? 2.042 ? ? metalc29 metalc ? ? G MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 106 A HOH 221 7_556 ? ? ? ? ? ? ? 2.041 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 20 N1 ? ? A C 1 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 20 O6 ? ? A C 1 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 20 N2 ? ? A C 1 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 A A 19 N1 ? ? A U 2 A A 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 2 O4 ? ? ? 1_555 A A 19 N6 ? ? A U 2 A A 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 18 N3 ? ? A G 3 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 18 O2 ? ? A G 3 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 18 N4 ? ? A G 3 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 17 N3 ? ? A G 4 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 17 O2 ? ? A G 4 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 17 N4 ? ? A G 4 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 16 N3 ? ? A G 5 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 16 O2 ? ? A G 5 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 16 N4 ? ? A G 5 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 5 N2 ? ? ? 1_555 A A 27 N1 ? ? A G 5 A A 27 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog16 hydrog ? ? A G 5 N3 ? ? ? 1_555 A A 27 N6 ? ? A G 5 A A 27 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog17 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 28 N7 ? ? A U 6 A A 28 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog18 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 28 N6 ? ? A U 6 A A 28 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog19 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 11 N7 ? ? A C 7 A G 11 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog20 hydrog ? ? A C 7 O2 ? ? ? 1_555 A A 29 N6 ? ? A C 7 A A 29 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog21 hydrog ? ? A C 7 O2 ? ? ? 1_555 A C 30 N4 ? ? A C 7 A C 30 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog22 hydrog ? ? A G 8 N2 ? ? ? 1_555 A A 31 N1 ? ? A G 8 A A 31 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog23 hydrog ? ? A G 8 N3 ? ? ? 1_555 A A 31 N6 ? ? A G 8 A A 31 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog24 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 33 N1 ? ? A C 9 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 33 O6 ? ? A C 9 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 9 O2 ? ? ? 1_555 A G 33 N2 ? ? A C 9 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 10 N3 ? ? ? 1_555 A A 32 N6 ? ? A A 10 A A 32 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog28 hydrog ? ? A G 11 N2 ? ? ? 1_555 A A 14 N1 ? ? A G 11 A A 14 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog29 hydrog ? ? A G 11 N3 ? ? ? 1_555 A A 14 N6 ? ? A G 11 A A 14 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog30 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 11 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 11 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 11 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 16 O2 ? ? ? 1_555 A A 28 N6 ? ? A C 16 A A 28 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog34 hydrog ? ? A C 17 O2 ? ? ? 1_555 A A 26 N6 ? ? A C 17 A A 26 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PRF 101 ? 8 'binding site for residue PRF A 101' AC2 Software A MN 102 ? 6 'binding site for residue MN A 102' AC3 Software A MN 103 ? 6 'binding site for residue MN A 103' AC4 Software A MN 104 ? 6 'binding site for residue MN A 104' AC5 Software A MN 105 ? 3 'binding site for residue MN A 105' AC6 Software A MN 106 ? 6 'binding site for residue MN A 106' AC7 Software A MN 107 ? 2 'binding site for residue MN A 107' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 G A 5 ? G A 5 . ? 1_555 ? 2 AC1 8 U A 6 ? U A 6 . ? 1_555 ? 3 AC1 8 C A 7 ? C A 7 . ? 1_555 ? 4 AC1 8 G A 11 ? G A 11 . ? 1_555 ? 5 AC1 8 C A 15 ? C A 15 . ? 1_555 ? 6 AC1 8 C A 16 ? C A 16 . ? 1_555 ? 7 AC1 8 A A 29 ? A A 29 . ? 1_555 ? 8 AC1 8 C A 30 ? C A 30 . ? 1_555 ? 9 AC2 6 G A 8 ? G A 8 . ? 1_555 ? 10 AC2 6 HOH I . ? HOH A 202 . ? 1_555 ? 11 AC2 6 HOH I . ? HOH A 208 . ? 1_555 ? 12 AC2 6 HOH I . ? HOH A 209 . ? 1_555 ? 13 AC2 6 HOH I . ? HOH A 211 . ? 1_555 ? 14 AC2 6 HOH I . ? HOH A 220 . ? 1_555 ? 15 AC3 6 A A 32 ? A A 32 . ? 1_555 ? 16 AC3 6 G A 33 ? G A 33 . ? 1_555 ? 17 AC3 6 HOH I . ? HOH A 203 . ? 1_555 ? 18 AC3 6 HOH I . ? HOH A 204 . ? 1_555 ? 19 AC3 6 HOH I . ? HOH A 206 . ? 1_555 ? 20 AC3 6 HOH I . ? HOH A 207 . ? 1_555 ? 21 AC4 6 G A 4 ? G A 4 . ? 1_555 ? 22 AC4 6 HOH I . ? HOH A 205 . ? 1_555 ? 23 AC4 6 HOH I . ? HOH A 212 . ? 1_555 ? 24 AC4 6 HOH I . ? HOH A 213 . ? 1_555 ? 25 AC4 6 HOH I . ? HOH A 216 . ? 1_555 ? 26 AC4 6 HOH I . ? HOH A 218 . ? 1_555 ? 27 AC5 3 A A 23 ? A A 23 . ? 1_555 ? 28 AC5 3 HOH I . ? HOH A 210 . ? 1_555 ? 29 AC5 3 HOH I . ? HOH A 217 . ? 1_555 ? 30 AC6 6 HOH I . ? HOH A 201 . ? 7_556 ? 31 AC6 6 HOH I . ? HOH A 201 . ? 1_555 ? 32 AC6 6 HOH I . ? HOH A 219 . ? 7_556 ? 33 AC6 6 HOH I . ? HOH A 219 . ? 1_555 ? 34 AC6 6 HOH I . ? HOH A 221 . ? 1_555 ? 35 AC6 6 HOH I . ? HOH A 221 . ? 7_556 ? 36 AC7 2 A A 32 ? A A 32 . ? 1_555 ? 37 AC7 2 G A 33 ? G A 33 . ? 1_555 ? # _atom_sites.entry_id 6VUI _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.008904 _atom_sites.fract_transf_matrix[1][2] 0.005141 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010281 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016839 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H MN N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 U 2 2 2 U U A . n A 1 3 G 3 3 3 G G A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 C 7 7 7 C C A . n A 1 8 G 8 8 8 G G A . n A 1 9 C 9 9 9 C C A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 U 12 12 12 U U A . n A 1 13 A 13 13 13 A A A . n A 1 14 A 14 14 14 A A A . n A 1 15 C 15 15 15 C C A . n A 1 16 C 16 16 16 C C A . n A 1 17 C 17 17 17 C C A . n A 1 18 C 18 18 18 C C A . n A 1 19 A 19 19 19 A A A . n A 1 20 G 20 20 20 G G A . n A 1 21 U 21 21 21 U U A . n A 1 22 U 22 22 22 U U A . n A 1 23 A 23 23 23 A A A . n A 1 24 A 24 24 24 A A A . n A 1 25 C 25 25 25 C C A . n A 1 26 A 26 26 26 A A A . n A 1 27 A 27 27 27 A A A . n A 1 28 A 28 28 28 A A A . n A 1 29 A 29 29 29 A A A . n A 1 30 C 30 30 30 C C A . n A 1 31 A 31 31 31 A A A . n A 1 32 A 32 32 32 A A A . n A 1 33 G 33 33 33 G G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PRF 1 101 34 PRF PRF A . C 3 MN 1 102 42 MN MN A . D 3 MN 1 103 43 MN MN A . E 3 MN 1 104 44 MN MN A . F 3 MN 1 105 45 MN MN A . G 3 MN 1 106 46 MN MN A . H 3 MN 1 107 48 MN MN A . I 4 HOH 1 201 31 HOH HOH A . I 4 HOH 2 202 16 HOH HOH A . I 4 HOH 3 203 28 HOH HOH A . I 4 HOH 4 204 23 HOH HOH A . I 4 HOH 5 205 13 HOH HOH A . I 4 HOH 6 206 19 HOH HOH A . I 4 HOH 7 207 18 HOH HOH A . I 4 HOH 8 208 10 HOH HOH A . I 4 HOH 9 209 11 HOH HOH A . I 4 HOH 10 210 2 HOH HOH A . I 4 HOH 11 211 22 HOH HOH A . I 4 HOH 12 212 9 HOH HOH A . I 4 HOH 13 213 30 HOH HOH A . I 4 HOH 14 214 32 HOH HOH A . I 4 HOH 15 215 27 HOH HOH A . I 4 HOH 16 216 14 HOH HOH A . I 4 HOH 17 217 1 HOH HOH A . I 4 HOH 18 218 29 HOH HOH A . I 4 HOH 19 219 21 HOH HOH A . I 4 HOH 20 220 17 HOH HOH A . I 4 HOH 21 221 20 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1050 ? 1 MORE -21 ? 1 'SSA (A^2)' 5730 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id MN _pdbx_struct_special_symmetry.auth_seq_id 106 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id MN _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A G 4 ? A G 4 ? 1_555 MN ? E MN . ? A MN 104 ? 1_555 O ? I HOH . ? A HOH 205 ? 1_555 99.3 ? 2 N7 ? A G 4 ? A G 4 ? 1_555 MN ? E MN . ? A MN 104 ? 1_555 O ? I HOH . ? A HOH 212 ? 1_555 84.1 ? 3 O ? I HOH . ? A HOH 205 ? 1_555 MN ? E MN . ? A MN 104 ? 1_555 O ? I HOH . ? A HOH 212 ? 1_555 92.7 ? 4 N7 ? A G 4 ? A G 4 ? 1_555 MN ? E MN . ? A MN 104 ? 1_555 O ? I HOH . ? A HOH 213 ? 1_555 83.6 ? 5 O ? I HOH . ? A HOH 205 ? 1_555 MN ? E MN . ? A MN 104 ? 1_555 O ? I HOH . ? A HOH 213 ? 1_555 177.1 ? 6 O ? I HOH . ? A HOH 212 ? 1_555 MN ? E MN . ? A MN 104 ? 1_555 O ? I HOH . ? A HOH 213 ? 1_555 87.9 ? 7 N7 ? A G 4 ? A G 4 ? 1_555 MN ? E MN . ? A MN 104 ? 1_555 O ? I HOH . ? A HOH 216 ? 1_555 96.2 ? 8 O ? I HOH . ? A HOH 205 ? 1_555 MN ? E MN . ? A MN 104 ? 1_555 O ? I HOH . ? A HOH 216 ? 1_555 86.2 ? 9 O ? I HOH . ? A HOH 212 ? 1_555 MN ? E MN . ? A MN 104 ? 1_555 O ? I HOH . ? A HOH 216 ? 1_555 178.9 ? 10 O ? I HOH . ? A HOH 213 ? 1_555 MN ? E MN . ? A MN 104 ? 1_555 O ? I HOH . ? A HOH 216 ? 1_555 93.2 ? 11 N7 ? A G 4 ? A G 4 ? 1_555 MN ? E MN . ? A MN 104 ? 1_555 O ? I HOH . ? A HOH 218 ? 1_555 166.6 ? 12 O ? I HOH . ? A HOH 205 ? 1_555 MN ? E MN . ? A MN 104 ? 1_555 O ? I HOH . ? A HOH 218 ? 1_555 93.0 ? 13 O ? I HOH . ? A HOH 212 ? 1_555 MN ? E MN . ? A MN 104 ? 1_555 O ? I HOH . ? A HOH 218 ? 1_555 90.0 ? 14 O ? I HOH . ? A HOH 213 ? 1_555 MN ? E MN . ? A MN 104 ? 1_555 O ? I HOH . ? A HOH 218 ? 1_555 84.1 ? 15 O ? I HOH . ? A HOH 216 ? 1_555 MN ? E MN . ? A MN 104 ? 1_555 O ? I HOH . ? A HOH 218 ? 1_555 90.0 ? 16 N7 ? A G 8 ? A G 8 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 202 ? 1_555 91.2 ? 17 N7 ? A G 8 ? A G 8 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 208 ? 1_555 87.4 ? 18 O ? I HOH . ? A HOH 202 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 208 ? 1_555 178.6 ? 19 N7 ? A G 8 ? A G 8 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 209 ? 1_555 89.3 ? 20 O ? I HOH . ? A HOH 202 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 209 ? 1_555 90.0 ? 21 O ? I HOH . ? A HOH 208 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 209 ? 1_555 90.1 ? 22 N7 ? A G 8 ? A G 8 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 211 ? 1_555 89.1 ? 23 O ? I HOH . ? A HOH 202 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 211 ? 1_555 89.9 ? 24 O ? I HOH . ? A HOH 208 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 211 ? 1_555 89.9 ? 25 O ? I HOH . ? A HOH 209 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 211 ? 1_555 178.4 ? 26 N7 ? A G 8 ? A G 8 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 220 ? 1_555 176.8 ? 27 O ? I HOH . ? A HOH 202 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 220 ? 1_555 91.7 ? 28 O ? I HOH . ? A HOH 208 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 220 ? 1_555 89.7 ? 29 O ? I HOH . ? A HOH 209 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 220 ? 1_555 92.2 ? 30 O ? I HOH . ? A HOH 211 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 220 ? 1_555 89.4 ? 31 OP2 ? A A 23 ? A A 23 ? 1_555 MN ? F MN . ? A MN 105 ? 1_555 O ? I HOH . ? A HOH 210 ? 1_555 81.8 ? 32 OP2 ? A A 23 ? A A 23 ? 1_555 MN ? F MN . ? A MN 105 ? 1_555 O ? I HOH . ? A HOH 217 ? 1_555 107.9 ? 33 O ? I HOH . ? A HOH 210 ? 1_555 MN ? F MN . ? A MN 105 ? 1_555 O ? I HOH . ? A HOH 217 ? 1_555 95.2 ? 34 OP2 ? A A 32 ? A A 32 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 N7 ? A G 33 ? A G 33 ? 1_555 93.3 ? 35 OP2 ? A A 32 ? A A 32 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 203 ? 1_555 178.1 ? 36 N7 ? A G 33 ? A G 33 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 203 ? 1_555 88.6 ? 37 OP2 ? A A 32 ? A A 32 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 204 ? 1_555 88.5 ? 38 N7 ? A G 33 ? A G 33 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 204 ? 1_555 177.9 ? 39 O ? I HOH . ? A HOH 203 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 204 ? 1_555 89.6 ? 40 OP2 ? A A 32 ? A A 32 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 206 ? 1_555 89.8 ? 41 N7 ? A G 33 ? A G 33 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 206 ? 1_555 93.0 ? 42 O ? I HOH . ? A HOH 203 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 206 ? 1_555 89.6 ? 43 O ? I HOH . ? A HOH 204 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 206 ? 1_555 88.1 ? 44 OP2 ? A A 32 ? A A 32 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 207 ? 1_555 90.2 ? 45 N7 ? A G 33 ? A G 33 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 207 ? 1_555 88.6 ? 46 O ? I HOH . ? A HOH 203 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 207 ? 1_555 90.3 ? 47 O ? I HOH . ? A HOH 204 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 207 ? 1_555 90.2 ? 48 O ? I HOH . ? A HOH 206 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 207 ? 1_555 178.4 ? 49 OP1 ? A A 32 ? A A 32 ? 1_555 MN ? H MN . ? A MN 107 ? 1_555 OP2 ? A G 33 ? A G 33 ? 1_555 110.1 ? 50 O ? I HOH . ? A HOH 201 ? 1_555 MN ? G MN . ? A MN 106 ? 1_555 O ? I HOH . ? A HOH 201 ? 7_556 73.7 ? 51 O ? I HOH . ? A HOH 201 ? 1_555 MN ? G MN . ? A MN 106 ? 1_555 O ? I HOH . ? A HOH 219 ? 1_555 89.9 ? 52 O ? I HOH . ? A HOH 201 ? 7_556 MN ? G MN . ? A MN 106 ? 1_555 O ? I HOH . ? A HOH 219 ? 1_555 119.0 ? 53 O ? I HOH . ? A HOH 201 ? 1_555 MN ? G MN . ? A MN 106 ? 1_555 O ? I HOH . ? A HOH 219 ? 7_556 118.9 ? 54 O ? I HOH . ? A HOH 201 ? 7_556 MN ? G MN . ? A MN 106 ? 1_555 O ? I HOH . ? A HOH 219 ? 7_556 90.0 ? 55 O ? I HOH . ? A HOH 219 ? 1_555 MN ? G MN . ? A MN 106 ? 1_555 O ? I HOH . ? A HOH 219 ? 7_556 144.9 ? 56 O ? I HOH . ? A HOH 201 ? 1_555 MN ? G MN . ? A MN 106 ? 1_555 O ? I HOH . ? A HOH 221 ? 1_555 84.8 ? 57 O ? I HOH . ? A HOH 201 ? 7_556 MN ? G MN . ? A MN 106 ? 1_555 O ? I HOH . ? A HOH 221 ? 1_555 142.3 ? 58 O ? I HOH . ? A HOH 219 ? 1_555 MN ? G MN . ? A MN 106 ? 1_555 O ? I HOH . ? A HOH 221 ? 1_555 91.0 ? 59 O ? I HOH . ? A HOH 219 ? 7_556 MN ? G MN . ? A MN 106 ? 1_555 O ? I HOH . ? A HOH 221 ? 1_555 73.6 ? 60 O ? I HOH . ? A HOH 201 ? 1_555 MN ? G MN . ? A MN 106 ? 1_555 O ? I HOH . ? A HOH 221 ? 7_556 142.3 ? 61 O ? I HOH . ? A HOH 201 ? 7_556 MN ? G MN . ? A MN 106 ? 1_555 O ? I HOH . ? A HOH 221 ? 7_556 84.9 ? 62 O ? I HOH . ? A HOH 219 ? 1_555 MN ? G MN . ? A MN 106 ? 1_555 O ? I HOH . ? A HOH 221 ? 7_556 73.6 ? 63 O ? I HOH . ? A HOH 219 ? 7_556 MN ? G MN . ? A MN 106 ? 1_555 O ? I HOH . ? A HOH 221 ? 7_556 91.1 ? 64 O ? I HOH . ? A HOH 221 ? 1_555 MN ? G MN . ? A MN 106 ? 1_555 O ? I HOH . ? A HOH 221 ? 7_556 128.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-06-24 2 'Structure model' 1 1 2020-07-08 3 'Structure model' 1 2 2020-07-15 4 'Structure model' 1 3 2020-08-26 5 'Structure model' 1 4 2022-03-16 6 'Structure model' 1 5 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Author supporting evidence' 7 5 'Structure model' 'Database references' 8 6 'Structure model' 'Data collection' 9 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' audit_author 2 2 'Structure model' citation 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 4 'Structure model' citation 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' struct_conn 8 5 'Structure model' database_2 9 5 'Structure model' pdbx_audit_support 10 6 'Structure model' chem_comp_atom 11 6 'Structure model' chem_comp_bond 12 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_audit_author.name' 2 2 'Structure model' '_citation.year' 3 3 'Structure model' '_citation.pdbx_database_id_DOI' 4 3 'Structure model' '_citation.pdbx_database_id_PubMed' 5 3 'Structure model' '_citation.title' 6 3 'Structure model' '_citation_author.identifier_ORCID' 7 3 'Structure model' '_citation_author.name' 8 4 'Structure model' '_citation.journal_volume' 9 4 'Structure model' '_citation.page_first' 10 4 'Structure model' '_citation.page_last' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 24 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 25 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 26 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 27 4 'Structure model' '_pdbx_struct_conn_angle.value' 28 4 'Structure model' '_struct_conn.pdbx_dist_value' 29 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 4 'Structure model' '_struct_conn.ptnr2_symmetry' 33 5 'Structure model' '_database_2.pdbx_DOI' 34 5 'Structure model' '_database_2.pdbx_database_accession' 35 5 'Structure model' '_pdbx_audit_support.funding_organization' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 38.3363 35.4603 27.1829 0.6982 ? 0.3551 ? 0.0476 ? 1.0169 ? -0.2270 ? 0.8067 ? 0.1832 ? 0.3513 ? 0.0131 ? 0.8035 ? 0.3578 ? 0.8271 ? 0.2685 ? 0.5086 ? -0.3674 ? -0.1358 ? -0.3358 ? -1.0354 ? 0.3993 ? 0.3219 ? -0.0972 ? 2 'X-RAY DIFFRACTION' ? refined 38.2013 39.5637 19.0263 0.8544 ? 0.2311 ? -0.0775 ? 1.1242 ? -0.2365 ? 0.8893 ? 0.8290 ? 0.2971 ? 0.3171 ? 0.2437 ? 0.0073 ? 0.2216 ? -0.8385 ? 0.1838 ? 0.7808 ? 0.1200 ? 0.4007 ? -0.6728 ? -0.1826 ? 0.7757 ? -0.0096 ? 3 'X-RAY DIFFRACTION' ? refined 32.5170 36.0465 29.6041 0.7612 ? 0.2623 ? -0.0563 ? 0.9126 ? -0.1746 ? 0.7064 ? 1.1488 ? 1.1123 ? -0.7220 ? 1.7168 ? -0.5256 ? 1.4346 ? -0.1690 ? 0.0614 ? -0.2585 ? 0.2030 ? 0.2068 ? -0.1888 ? 0.8258 ? 0.0958 ? -0.0001 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 1 ? ? A 10 ? ;chain 'A' and (resid 1 through 10 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? A 11 ? ? A 15 ? ;chain 'A' and (resid 11 through 15 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? A 16 ? ? A 33 ? ;chain 'A' and (resid 16 through 33 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? dev_3395 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 # _pdbx_entry_details.entry_id 6VUI _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 MN MN MN N N 114 PRF N1 N N N 115 PRF C2 C N N 116 PRF N3 N N N 117 PRF C4 C Y N 118 PRF C5 C Y N 119 PRF C6 C N N 120 PRF O6 O N N 121 PRF C7 C Y N 122 PRF C10 C N N 123 PRF N11 N N N 124 PRF C8 C Y N 125 PRF N9 N Y N 126 PRF N2 N N N 127 PRF H91 H N N 128 PRF H101 H N N 129 PRF H102 H N N 130 PRF H111 H N N 131 PRF H112 H N N 132 PRF H81 H N N 133 PRF HN91 H N N 134 PRF HN21 H N N 135 PRF HN22 H N N 136 U OP3 O N N 137 U P P N N 138 U OP1 O N N 139 U OP2 O N N 140 U "O5'" O N N 141 U "C5'" C N N 142 U "C4'" C N R 143 U "O4'" O N N 144 U "C3'" C N S 145 U "O3'" O N N 146 U "C2'" C N R 147 U "O2'" O N N 148 U "C1'" C N R 149 U N1 N N N 150 U C2 C N N 151 U O2 O N N 152 U N3 N N N 153 U C4 C N N 154 U O4 O N N 155 U C5 C N N 156 U C6 C N N 157 U HOP3 H N N 158 U HOP2 H N N 159 U "H5'" H N N 160 U "H5''" H N N 161 U "H4'" H N N 162 U "H3'" H N N 163 U "HO3'" H N N 164 U "H2'" H N N 165 U "HO2'" H N N 166 U "H1'" H N N 167 U H3 H N N 168 U H5 H N N 169 U H6 H N N 170 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 PRF N1 C2 sing N N 118 PRF N1 C6 sing N N 119 PRF N1 H91 sing N N 120 PRF C2 N3 doub N N 121 PRF C2 N2 sing N N 122 PRF N3 C4 sing N N 123 PRF C4 C5 doub Y N 124 PRF C4 N9 sing Y N 125 PRF C5 C6 sing N N 126 PRF C5 C7 sing Y N 127 PRF C6 O6 doub N N 128 PRF C7 C10 sing N N 129 PRF C7 C8 doub Y N 130 PRF C10 N11 sing N N 131 PRF C10 H101 sing N N 132 PRF C10 H102 sing N N 133 PRF N11 H111 sing N N 134 PRF N11 H112 sing N N 135 PRF C8 N9 sing Y N 136 PRF C8 H81 sing N N 137 PRF N9 HN91 sing N N 138 PRF N2 HN21 sing N N 139 PRF N2 HN22 sing N N 140 U OP3 P sing N N 141 U OP3 HOP3 sing N N 142 U P OP1 doub N N 143 U P OP2 sing N N 144 U P "O5'" sing N N 145 U OP2 HOP2 sing N N 146 U "O5'" "C5'" sing N N 147 U "C5'" "C4'" sing N N 148 U "C5'" "H5'" sing N N 149 U "C5'" "H5''" sing N N 150 U "C4'" "O4'" sing N N 151 U "C4'" "C3'" sing N N 152 U "C4'" "H4'" sing N N 153 U "O4'" "C1'" sing N N 154 U "C3'" "O3'" sing N N 155 U "C3'" "C2'" sing N N 156 U "C3'" "H3'" sing N N 157 U "O3'" "HO3'" sing N N 158 U "C2'" "O2'" sing N N 159 U "C2'" "C1'" sing N N 160 U "C2'" "H2'" sing N N 161 U "O2'" "HO2'" sing N N 162 U "C1'" N1 sing N N 163 U "C1'" "H1'" sing N N 164 U N1 C2 sing N N 165 U N1 C6 sing N N 166 U C2 O2 doub N N 167 U C2 N3 sing N N 168 U N3 C4 sing N N 169 U N3 H3 sing N N 170 U C4 O4 doub N N 171 U C4 C5 sing N N 172 U C5 C6 doub N N 173 U C5 H5 sing N N 174 U C6 H6 sing N N 175 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6VUI 'double helix' 6VUI 'a-form double helix' 6VUI 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A G 20 1_555 -0.052 -0.027 -0.165 4.668 -7.388 -3.249 1 A_C1:G20_A A 1 ? A 20 ? 19 1 1 A U 2 1_555 A A 19 1_555 -0.145 -0.124 -0.041 2.200 -16.477 -0.839 2 A_U2:A19_A A 2 ? A 19 ? 20 1 1 A G 3 1_555 A C 18 1_555 0.190 -0.031 -0.063 -6.954 -8.413 -2.058 3 A_G3:C18_A A 3 ? A 18 ? 19 1 1 A G 4 1_555 A C 17 1_555 0.319 -0.051 0.190 -6.972 -10.248 -1.157 4 A_G4:C17_A A 4 ? A 17 ? 19 1 1 A G 5 1_555 A C 16 1_555 -0.323 -0.008 0.146 -3.489 -9.532 -2.183 5 A_G5:C16_A A 5 ? A 16 ? 19 1 1 A U 6 1_555 A A 28 1_555 -0.490 3.576 1.098 -26.102 -18.595 -71.076 6 A_U6:A28_A A 6 ? A 28 ? 23 3 1 A C 7 1_555 A A 29 1_555 4.954 0.481 1.376 -16.849 7.216 -39.027 7 A_C7:A29_A A 7 ? A 29 ? ? ? 1 A G 11 1_555 A C 30 1_555 0.051 -0.171 0.377 -3.098 -21.879 -3.376 8 A_G11:C30_A A 11 ? A 30 ? 19 1 1 A G 8 1_555 A A 31 1_555 3.879 -3.780 -0.438 13.205 16.090 -66.047 9 A_G8:A31_A A 8 ? A 31 ? 10 6 1 A A 10 1_555 A A 32 1_555 6.607 -3.876 -0.048 4.749 -18.597 -27.113 10 A_A10:A32_A A 10 ? A 32 ? ? 10 1 A C 9 1_555 A G 33 1_555 -0.442 -0.056 -0.019 5.153 -7.489 -8.403 11 A_C9:G33_A A 9 ? A 33 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A G 20 1_555 A U 2 1_555 A A 19 1_555 0.603 -1.777 3.226 1.032 8.620 34.015 -4.144 -0.857 2.725 14.445 -1.729 35.073 1 AA_C1U2:A19G20_AA A 1 ? A 20 ? A 2 ? A 19 ? 1 A U 2 1_555 A A 19 1_555 A G 3 1_555 A C 18 1_555 -0.432 -1.742 3.371 0.804 11.840 34.307 -4.371 0.802 2.636 19.367 -1.314 36.243 2 AA_U2G3:C18A19_AA A 2 ? A 19 ? A 3 ? A 18 ? 1 A G 3 1_555 A C 18 1_555 A G 4 1_555 A C 17 1_555 0.651 -1.949 3.182 1.474 6.886 28.241 -5.252 -1.003 2.671 13.842 -2.963 29.088 3 AA_G3G4:C17C18_AA A 3 ? A 18 ? A 4 ? A 17 ? 1 A G 4 1_555 A C 17 1_555 A G 5 1_555 A C 16 1_555 0.124 -1.901 3.041 2.859 3.614 31.586 -4.047 0.242 2.812 6.595 -5.218 31.912 4 AA_G4G5:C16C17_AA A 4 ? A 17 ? A 5 ? A 16 ? 1 A G 5 1_555 A C 16 1_555 A U 6 1_555 A A 28 1_555 -6.614 -1.134 1.444 14.939 6.018 21.464 -2.105 13.429 -2.737 13.909 -34.529 26.778 5 AA_G5U6:A28C16_AA A 5 ? A 16 ? A 6 ? A 28 ? 1 A U 6 1_555 A A 28 1_555 A C 7 1_555 A A 29 1_555 2.775 -1.400 3.484 3.500 -0.229 48.747 -1.673 -3.063 3.669 -0.277 -4.234 48.865 6 AA_U6C7:A29A28_AA A 6 ? A 28 ? A 7 ? A 29 ? 1 A C 7 1_555 A A 29 1_555 A G 11 1_555 A C 30 1_555 0.675 -2.220 0.236 -143.170 -98.355 172.488 -1.105 -0.344 0.282 -49.181 71.591 179.587 7 AA_C7G11:C30A29_AA A 7 ? A 29 ? A 11 ? A 30 ? 1 A G 11 1_555 A C 30 1_555 A G 8 1_555 A A 31 1_555 -1.917 2.933 3.440 -168.565 -11.367 -84.815 -1.404 -1.951 1.062 5.804 -86.072 -171.845 8 AA_G11G8:A31C30_AA A 11 ? A 30 ? A 8 ? A 31 ? 1 A G 8 1_555 A A 31 1_555 A A 10 1_555 A A 32 1_555 -5.433 2.513 -3.053 151.368 52.454 13.393 2.410 -0.519 -4.642 29.087 -83.937 160.335 9 AA_G8A10:A32A31_AA A 8 ? A 31 ? A 10 ? A 32 ? 1 A A 10 1_555 A A 32 1_555 A C 9 1_555 A G 33 1_555 2.736 1.738 -3.418 1.392 -6.891 -52.249 -2.417 2.990 -3.248 7.784 1.572 -52.687 10 AA_A10C9:G33A32_AA A 10 ? A 32 ? A 9 ? A 33 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM63162-14 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 MN ? ? MN ? ? 'SUBJECT OF INVESTIGATION' ? 2 PRF ? ? PRF ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 7-DEAZA-7-AMINOMETHYL-GUANINE PRF 3 'MANGANESE (II) ION' MN 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3Q50 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support SAXS _pdbx_struct_assembly_auth_evidence.details ? #