HEADER TRANSFERASE/TRANSFERASE INHIBITOR 16-FEB-20 6VUT TITLE CRYSTAL STRUCTURE OF EIS FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX TITLE 2 WITH INHIBITOR SGT392 COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLTRANSFERASE EIS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AMINOGLYCOSIDE N-ACETYLTRANSFERASE,ENHANCED INTRACELLULAR COMPND 5 SURVIVAL PROTEIN,PROTEIN-LYSINE N-ACETYLTRANSFERASE; COMPND 6 EC: 2.3.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: EIS, RV2416C, MTCY253.04; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ACETYLTRANSFERASE, RESISTANCE, AMINOGLYCOSIDE, COMPETITIVE, KEYWDS 2 TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.PUNETHA,C.HOU,H.X.NGO,S.GARNEAU-TSODIKOVA,O.V.TSODIKOV REVDAT 3 11-OCT-23 6VUT 1 REMARK REVDAT 2 01-JUL-20 6VUT 1 JRNL REVDAT 1 03-JUN-20 6VUT 0 JRNL AUTH A.PUNETHA,H.X.NGO,S.Y.L.HOLBROOK,K.D.GREEN,M.J.WILLBY, JRNL AUTH 2 S.A.BONNETT,K.KRIEGER,E.K.DENNIS,J.E.POSEY,T.PARISH, JRNL AUTH 3 O.V.TSODIKOV,S.GARNEAU-TSODIKOVA JRNL TITL STRUCTURE-GUIDED OPTIMIZATION OF INHIBITORS OF JRNL TITL 2 ACETYLTRANSFERASE EIS FROMMYCOBACTERIUM TUBERCULOSIS. JRNL REF ACS CHEM.BIOL. V. 15 1581 2020 JRNL REFN ESSN 1554-8937 JRNL PMID 32421305 JRNL DOI 10.1021/ACSCHEMBIO.0C00184 REMARK 2 REMARK 2 RESOLUTION. 2.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 18204 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1326 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3047 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.49000 REMARK 3 B22 (A**2) : -2.49000 REMARK 3 B33 (A**2) : 8.08000 REMARK 3 B12 (A**2) : -1.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.394 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.265 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.230 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.021 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3174 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2952 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4310 ; 1.386 ; 1.657 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6764 ; 1.165 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 394 ; 7.211 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;27.367 ;18.840 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 481 ;16.572 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;19.213 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 398 ; 0.054 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3593 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 745 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6VUT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000246813. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19258 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.730 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3R1K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL PH 8.0 ADJUSTED AT REMARK 280 ROOM TEMPERATURE, 7% W/V PEG 8000, AND 400 MM (NH4)2SO4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 87.59500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.57300 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 40.73033 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 87.59500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 50.57300 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 40.73033 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 87.59500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 50.57300 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 40.73033 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 87.59500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 50.57300 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 40.73033 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 87.59500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 50.57300 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 40.73033 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 87.59500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 50.57300 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.73033 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 101.14599 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 81.46067 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 101.14599 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 81.46067 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 101.14599 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 81.46067 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 101.14599 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 81.46067 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 101.14599 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 81.46067 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 101.14599 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 81.46067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 35030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 86020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -506.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 122.19100 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 122.19100 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 122.19100 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 52 REMARK 465 GLY A 53 REMARK 465 PRO A 54 REMARK 465 GLY A 55 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 158 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 93 56.20 35.05 REMARK 500 LEU A 158 -176.09 -64.79 REMARK 500 HIS A 171 37.68 -144.44 REMARK 500 GLU A 240 114.87 -168.24 REMARK 500 ALA A 399 -79.68 -80.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 696 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH A 697 DISTANCE = 7.37 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 508 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 68 O REMARK 620 2 THR A 70 OG1 138.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 510 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 130 O REMARK 620 2 ARG A 353 O 98.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 509 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 273 OD2 REMARK 620 2 PEG A 503 O2 93.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RN7 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 510 DBREF 6VUT A 1 402 UNP P9WFK7 EIS_MYCTU 1 402 SEQADV 6VUT MET A -19 UNP P9WFK7 EXPRESSION TAG SEQADV 6VUT GLY A -18 UNP P9WFK7 EXPRESSION TAG SEQADV 6VUT SER A -17 UNP P9WFK7 EXPRESSION TAG SEQADV 6VUT SER A -16 UNP P9WFK7 EXPRESSION TAG SEQADV 6VUT HIS A -15 UNP P9WFK7 EXPRESSION TAG SEQADV 6VUT HIS A -14 UNP P9WFK7 EXPRESSION TAG SEQADV 6VUT HIS A -13 UNP P9WFK7 EXPRESSION TAG SEQADV 6VUT HIS A -12 UNP P9WFK7 EXPRESSION TAG SEQADV 6VUT HIS A -11 UNP P9WFK7 EXPRESSION TAG SEQADV 6VUT HIS A -10 UNP P9WFK7 EXPRESSION TAG SEQADV 6VUT SER A -9 UNP P9WFK7 EXPRESSION TAG SEQADV 6VUT SER A -8 UNP P9WFK7 EXPRESSION TAG SEQADV 6VUT GLY A -7 UNP P9WFK7 EXPRESSION TAG SEQADV 6VUT LEU A -6 UNP P9WFK7 EXPRESSION TAG SEQADV 6VUT VAL A -5 UNP P9WFK7 EXPRESSION TAG SEQADV 6VUT PRO A -4 UNP P9WFK7 EXPRESSION TAG SEQADV 6VUT ARG A -3 UNP P9WFK7 EXPRESSION TAG SEQADV 6VUT GLY A -2 UNP P9WFK7 EXPRESSION TAG SEQADV 6VUT SER A -1 UNP P9WFK7 EXPRESSION TAG SEQADV 6VUT HIS A 0 UNP P9WFK7 EXPRESSION TAG SEQADV 6VUT ALA A 204 UNP P9WFK7 CYS 204 ENGINEERED MUTATION SEQRES 1 A 422 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 422 LEU VAL PRO ARG GLY SER HIS MET THR VAL THR LEU CYS SEQRES 3 A 422 SER PRO THR GLU ASP ASP TRP PRO GLY MET PHE LEU LEU SEQRES 4 A 422 ALA ALA ALA SER PHE THR ASP PHE ILE GLY PRO GLU SER SEQRES 5 A 422 ALA THR ALA TRP ARG THR LEU VAL PRO THR ASP GLY ALA SEQRES 6 A 422 VAL VAL VAL ARG ASP GLY ALA GLY PRO GLY SER GLU VAL SEQRES 7 A 422 VAL GLY MET ALA LEU TYR MET ASP LEU ARG LEU THR VAL SEQRES 8 A 422 PRO GLY GLU VAL VAL LEU PRO THR ALA GLY LEU SER PHE SEQRES 9 A 422 VAL ALA VAL ALA PRO THR HIS ARG ARG ARG GLY LEU LEU SEQRES 10 A 422 ARG ALA MET CYS ALA GLU LEU HIS ARG ARG ILE ALA ASP SEQRES 11 A 422 SER GLY TYR PRO VAL ALA ALA LEU HIS ALA SER GLU GLY SEQRES 12 A 422 GLY ILE TYR GLY ARG PHE GLY TYR GLY PRO ALA THR THR SEQRES 13 A 422 LEU HIS GLU LEU THR VAL ASP ARG ARG PHE ALA ARG PHE SEQRES 14 A 422 HIS ALA ASP ALA PRO GLY GLY GLY LEU GLY GLY SER SER SEQRES 15 A 422 VAL ARG LEU VAL ARG PRO THR GLU HIS ARG GLY GLU PHE SEQRES 16 A 422 GLU ALA ILE TYR GLU ARG TRP ARG GLN GLN VAL PRO GLY SEQRES 17 A 422 GLY LEU LEU ARG PRO GLN VAL LEU TRP ASP GLU LEU LEU SEQRES 18 A 422 ALA GLU ALA LYS ALA ALA PRO GLY GLY ASP ARG GLU SER SEQRES 19 A 422 PHE ALA LEU LEU HIS PRO ASP GLY TYR ALA LEU TYR ARG SEQRES 20 A 422 VAL ASP ARG THR ASP LEU LYS LEU ALA ARG VAL SER GLU SEQRES 21 A 422 LEU ARG ALA VAL THR ALA ASP ALA HIS CYS ALA LEU TRP SEQRES 22 A 422 ARG ALA LEU ILE GLY LEU ASP SER MET GLU ARG ILE SER SEQRES 23 A 422 ILE ILE THR HIS PRO GLN ASP PRO LEU PRO HIS LEU LEU SEQRES 24 A 422 THR ASP THR ARG LEU ALA ARG THR THR TRP ARG GLN ASP SEQRES 25 A 422 GLY LEU TRP LEU ARG ILE MET ASN VAL PRO ALA ALA LEU SEQRES 26 A 422 GLU ALA ARG GLY TYR ALA HIS GLU VAL GLY GLU PHE SER SEQRES 27 A 422 THR VAL LEU GLU VAL SER ASP GLY GLY ARG PHE ALA LEU SEQRES 28 A 422 LYS ILE GLY ASP GLY ARG ALA ARG CYS THR PRO THR ASP SEQRES 29 A 422 ALA ALA ALA GLU ILE GLU MET ASP ARG ASP VAL LEU GLY SEQRES 30 A 422 SER LEU TYR LEU GLY ALA HIS ARG ALA SER THR LEU ALA SEQRES 31 A 422 ALA ALA ASN ARG LEU ARG THR LYS ASP SER GLN LEU LEU SEQRES 32 A 422 ARG ARG LEU ASP ALA ALA PHE ALA SER ASP VAL PRO VAL SEQRES 33 A 422 GLN THR ALA PHE GLU PHE HET RN7 A 501 27 HET PEG A 502 7 HET PEG A 503 7 HET GOL A 504 6 HET SO4 A 505 5 HET SO4 A 506 5 HET SO4 A 507 5 HET NA A 508 1 HET NA A 509 1 HET NA A 510 1 HETNAM RN7 2-[(4-AMINO-5,6,7,8-TETRAHYDRO[1]BENZOTHIENO[2,3- HETNAM 2 RN7 D]PYRIMIDIN-2-YL)SULFANYL]-N-[2-(MORPHOLIN-4-YL) HETNAM 3 RN7 ETHYL]ACETAMIDE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 RN7 C18 H25 N5 O2 S2 FORMUL 3 PEG 2(C4 H10 O3) FORMUL 5 GOL C3 H8 O3 FORMUL 6 SO4 3(O4 S 2-) FORMUL 9 NA 3(NA 1+) FORMUL 12 HOH *97(H2 O) HELIX 1 AA1 THR A 9 ASP A 11 5 3 HELIX 2 AA2 ASP A 12 PHE A 24 1 13 HELIX 3 AA3 GLY A 29 THR A 38 1 10 HELIX 4 AA4 PRO A 89 ARG A 92 5 4 HELIX 5 AA5 GLY A 95 SER A 111 1 17 HELIX 6 AA6 TYR A 126 GLY A 130 5 5 HELIX 7 AA7 ARG A 167 GLU A 170 5 4 HELIX 8 AA8 HIS A 171 VAL A 186 1 16 HELIX 9 AA9 PRO A 193 GLU A 203 1 11 HELIX 10 AB1 THR A 245 GLY A 258 1 14 HELIX 11 AB2 PRO A 274 LEU A 279 1 6 HELIX 12 AB3 ASP A 281 ARG A 283 5 3 HELIX 13 AB4 ASN A 300 ARG A 308 1 9 HELIX 14 AB5 ASP A 352 LEU A 361 1 10 HELIX 15 AB6 ARG A 365 ALA A 372 1 8 HELIX 16 AB7 ASP A 379 ALA A 391 1 13 SHEET 1 AA1 7 THR A 4 CYS A 6 0 SHEET 2 AA1 7 ALA A 45 ARG A 49 -1 O VAL A 47 N CYS A 6 SHEET 3 AA1 7 VAL A 58 VAL A 71 -1 O ALA A 62 N VAL A 46 SHEET 4 AA1 7 VAL A 75 VAL A 87 -1 O LEU A 77 N LEU A 69 SHEET 5 AA1 7 VAL A 115 HIS A 119 1 O ALA A 117 N LEU A 82 SHEET 6 AA1 7 LEU A 294 ILE A 298 -1 O ARG A 297 N ALA A 116 SHEET 7 AA1 7 GLY A 132 PRO A 133 -1 N GLY A 132 O LEU A 296 SHEET 1 AA2 7 ARG A 164 VAL A 166 0 SHEET 2 AA2 7 PHE A 215 HIS A 219 -1 O LEU A 218 N ARG A 164 SHEET 3 AA2 7 GLY A 222 VAL A 228 -1 O GLY A 222 N HIS A 219 SHEET 4 AA2 7 LEU A 235 ALA A 243 -1 O ARG A 237 N ARG A 227 SHEET 5 AA2 7 ARG A 264 THR A 269 1 O SER A 266 N VAL A 238 SHEET 6 AA2 7 THR A 136 ASP A 143 -1 N VAL A 142 O ILE A 265 SHEET 7 AA2 7 ALA A 285 ASP A 292 -1 O GLN A 291 N LEU A 137 SHEET 1 AA3 5 ARG A 337 PRO A 342 0 SHEET 2 AA3 5 GLY A 327 GLY A 334 -1 N ALA A 330 O THR A 341 SHEET 3 AA3 5 PHE A 317 VAL A 323 -1 N THR A 319 O LEU A 331 SHEET 4 AA3 5 ILE A 349 MET A 351 1 O ILE A 349 N GLU A 322 SHEET 5 AA3 5 LEU A 375 THR A 377 -1 O ARG A 376 N GLU A 350 LINK O ARG A 68 NA NA A 508 1555 1555 2.84 LINK OG1 THR A 70 NA NA A 508 1555 1555 2.72 LINK O GLY A 130 NA NA A 510 1555 1555 2.91 LINK OD2 ASP A 273 NA NA A 509 1555 1555 2.49 LINK O ARG A 353 NA NA A 510 1555 1555 2.48 LINK O2 PEG A 503 NA NA A 509 1555 1555 2.91 SITE 1 AC1 11 ASP A 26 ILE A 28 ALA A 33 TRP A 36 SITE 2 AC1 11 MET A 65 SER A 83 PHE A 84 GLU A 401 SITE 3 AC1 11 PHE A 402 PEG A 502 HOH A 662 SITE 1 AC2 6 HIS A 119 ALA A 120 GLU A 401 PHE A 402 SITE 2 AC2 6 RN7 A 501 HOH A 622 SITE 1 AC3 10 LEU A 241 ARG A 242 ILE A 267 ILE A 268 SITE 2 AC3 10 THR A 269 HIS A 270 GLN A 397 SO4 A 505 SITE 3 AC3 10 NA A 509 HOH A 657 SITE 1 AC4 3 HIS A 105 ARG A 297 ARG A 353 SITE 1 AC5 8 ARG A 242 ILE A 268 THR A 269 HIS A 270 SITE 2 AC5 8 GLN A 397 THR A 398 PEG A 503 HOH A 601 SITE 1 AC6 5 TRP A 13 VAL A 40 PRO A 41 ALA A 45 SITE 2 AC6 5 HOH A 604 SITE 1 AC7 5 GLY A 73 GLY A 309 TYR A 310 SER A 392 SITE 2 AC7 5 ASP A 393 SITE 1 AC8 4 ARG A 68 THR A 70 ARG A 183 GLY A 189 SITE 1 AC9 6 HIS A 249 TRP A 253 ILE A 267 THR A 269 SITE 2 AC9 6 ASP A 273 PEG A 503 SITE 1 AD1 6 GLY A 130 LEU A 296 ARG A 297 ILE A 298 SITE 2 AD1 6 ARG A 353 GLY A 357 CRYST1 175.190 175.190 122.191 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005708 0.003296 0.000000 0.00000 SCALE2 0.000000 0.006591 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008184 0.00000