data_6VWT # _entry.id 6VWT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6VWT pdb_00006vwt 10.2210/pdb6vwt/pdb WWPDB D_1000247220 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details '5E54 contains same RNA without ligand, prior to phase transition' _pdbx_database_related.db_id 5E54 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6VWT _pdbx_database_status.recvd_initial_deposition_date 2020-02-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Stagno, J.R.' 1 0000-0002-6464-7829 'Wang, Y.-X.' 2 0000-0002-2175-0148 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 12 _citation.language ? _citation.page_first 1762 _citation.page_last 1762 _citation.title 'Synchronous RNA conformational changes trigger ordered phase transitions in crystals.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-021-21838-5 _citation.pdbx_database_id_PubMed 33741910 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ramakrishnan, S.' 1 ? primary 'Stagno, J.R.' 2 ? primary 'Conrad, C.E.' 3 ? primary 'Ding, J.' 4 ? primary 'Yu, P.' 5 ? primary 'Bhandari, Y.R.' 6 ? primary 'Lee, Y.T.' 7 ? primary 'Pauly, G.' 8 ? primary 'Yefanov, O.' 9 ? primary 'Wiedorn, M.O.' 10 ? primary 'Knoska, J.' 11 ? primary 'Oberthur, D.' 12 ? primary 'White, T.A.' 13 ? primary 'Barty, A.' 14 ? primary 'Mariani, V.' 15 ? primary 'Li, C.' 16 ? primary 'Brehm, W.' 17 ? primary 'Heinz, W.F.' 18 ? primary 'Magidson, V.' 19 ? primary 'Lockett, S.' 20 ? primary 'Hunter, M.S.' 21 ? primary 'Boutet, S.' 22 ? primary 'Zatsepin, N.A.' 23 ? primary 'Zuo, X.' 24 ? primary 'Grant, T.D.' 25 ? primary 'Pandey, S.' 26 ? primary 'Schmidt, M.' 27 ? primary 'Spence, J.C.H.' 28 ? primary 'Chapman, H.N.' 29 ? primary 'Wang, Y.X.' 30 ? # _cell.angle_alpha 99.290 _cell.angle_alpha_esd ? _cell.angle_beta 90.550 _cell.angle_beta_esd ? _cell.angle_gamma 90.210 _cell.angle_gamma_esd ? _cell.entry_id 6VWT _cell.details ? _cell.formula_units_Z ? _cell.length_a 50.340 _cell.length_a_esd ? _cell.length_b 25.200 _cell.length_b_esd ? _cell.length_c 78.740 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VWT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'adenine riboswitch aptamer variant' 22687.383 2 ? variant ? ? 2 non-polymer syn ADENINE 135.127 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 8 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGAAGAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUCUUCCC _entity_poly.pdbx_seq_one_letter_code_can GGGAAGAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUCUUCCC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 A n 1 5 A n 1 6 G n 1 7 A n 1 8 U n 1 9 A n 1 10 U n 1 11 A n 1 12 A n 1 13 U n 1 14 C n 1 15 C n 1 16 U n 1 17 A n 1 18 A n 1 19 U n 1 20 G n 1 21 A n 1 22 U n 1 23 A n 1 24 U n 1 25 G n 1 26 G n 1 27 U n 1 28 U n 1 29 U n 1 30 G n 1 31 G n 1 32 G n 1 33 A n 1 34 G n 1 35 U n 1 36 U n 1 37 U n 1 38 C n 1 39 U n 1 40 A n 1 41 C n 1 42 C n 1 43 A n 1 44 A n 1 45 G n 1 46 A n 1 47 G n 1 48 C n 1 49 C n 1 50 U n 1 51 U n 1 52 A n 1 53 A n 1 54 A n 1 55 C n 1 56 U n 1 57 C n 1 58 U n 1 59 U n 1 60 G n 1 61 A n 1 62 U n 1 63 U n 1 64 A n 1 65 U n 1 66 C n 1 67 U n 1 68 U n 1 69 C n 1 70 C n 1 71 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 71 _pdbx_entity_src_syn.organism_scientific 'Vibrio vulnificus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 672 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code CP009262.1 _struct_ref.pdbx_db_accession 675337566 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code CGCUUCAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUGAAGUC _struct_ref.pdbx_align_begin 1106592 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6VWT A 1 ? 71 ? 675337566 1106592 ? 1106662 ? 13 83 2 1 6VWT B 1 ? 71 ? 675337566 1106592 ? 1106662 ? 13 83 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6VWT G A 1 ? GB 675337566 C 1106592 variant 13 1 1 6VWT G A 3 ? GB 675337566 C 1106594 variant 15 2 1 6VWT A A 4 ? GB 675337566 U 1106595 variant 16 3 1 6VWT A A 5 ? GB 675337566 U 1106596 variant 17 4 1 6VWT G A 6 ? GB 675337566 C 1106597 variant 18 5 1 6VWT C A 66 ? GB 675337566 G 1106657 variant 78 6 1 6VWT U A 67 ? GB 675337566 A 1106658 variant 79 7 1 6VWT U A 68 ? GB 675337566 A 1106659 variant 80 8 1 6VWT C A 69 ? GB 675337566 G 1106660 variant 81 9 1 6VWT C A 70 ? GB 675337566 U 1106661 variant 82 10 2 6VWT G B 1 ? GB 675337566 C 1106592 variant 13 11 2 6VWT G B 3 ? GB 675337566 C 1106594 variant 15 12 2 6VWT A B 4 ? GB 675337566 U 1106595 variant 16 13 2 6VWT A B 5 ? GB 675337566 U 1106596 variant 17 14 2 6VWT G B 6 ? GB 675337566 C 1106597 variant 18 15 2 6VWT C B 66 ? GB 675337566 G 1106657 variant 78 16 2 6VWT U B 67 ? GB 675337566 A 1106658 variant 79 17 2 6VWT U B 68 ? GB 675337566 A 1106659 variant 80 18 2 6VWT C B 69 ? GB 675337566 G 1106660 variant 81 19 2 6VWT C B 70 ? GB 675337566 U 1106661 variant 82 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ADE non-polymer . ADENINE ? 'C5 H5 N5' 135.127 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6VWT _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.17 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 43.38 _exptl_crystal.description plates _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'BATCH MODE' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;40 mM sodium cacodylate, pH 6.5, 80 mM potassium chloride, 100 mM magnesium chloride, 12 mM spermine tetrahydrochloride, 65% v/v (+/-)-2-methyl-2,4-pentanediol ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 295 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment Y # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'CS-PAD CXI-1' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-07-19 _diffrn_detector.pdbx_frequency 120 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Beryllium lens' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.34 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'FREE ELECTRON LASER' _diffrn_source.target ? _diffrn_source.type 'SLAC LCLS BEAMLINE CXI' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.34 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline CXI _diffrn_source.pdbx_synchrotron_site 'SLAC LCLS' # _reflns.B_iso_Wilson_estimate 82.8 _reflns.entry_id 6VWT _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.00 _reflns.d_resolution_low 25.17 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7656 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 751.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13.49 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.9976 _reflns.pdbx_CC_star 0.9994 _reflns.pdbx_R_split 0.0734 # _reflns_shell.d_res_high 3.00 _reflns_shell.d_res_low 3.11 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 0.58 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 803 _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 207.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.682 _reflns_shell.pdbx_CC_star 0.901 _reflns_shell.pdbx_R_split 1.9061 # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 154.680 _refine.B_iso_mean 91.2944 _refine.B_iso_min 56.570 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6VWT _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.0300 _refine.ls_d_res_low 25.1700 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7285 _refine.ls_number_reflns_R_free 434 _refine.ls_number_reflns_R_work 6851 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.6100 _refine.ls_percent_reflns_R_free 5.9600 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2274 _refine.ls_R_factor_R_free 0.2503 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2259 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.960 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4tzx _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 32.6600 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3300 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 3.0300 _refine_hist.d_res_low 25.1700 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3034 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 142 _refine_hist.pdbx_B_iso_mean_ligand 76.39 _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 3006 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight _refine_ls_restr_ncs.pdbx_ens_id 'X-RAY DIFFRACTION' 1 ? ? 0.095 ? ? 1 POSITIONAL ? A 1503 ? ? 1 'X-RAY DIFFRACTION' 2 ? ? 0.095 ? ? 2 POSITIONAL ? B 1503 ? ? 1 'X-RAY DIFFRACTION' 1 ? ? 0.006 ? ? 3 POSITIONAL ? A 10 ? ? 2 'X-RAY DIFFRACTION' 2 ? ? 0.006 ? ? 4 POSITIONAL ? B 10 ? ? 2 # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 3.0300 3.1400 747 . 40 707 96.0000 . . . 0.3265 0.0000 0.3895 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 3.1400 3.2700 673 . 30 643 98.0000 . . . 0.2743 0.0000 0.3114 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 3.2700 3.4200 728 . 54 674 98.0000 . . . 0.2999 0.0000 0.2821 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 3.4200 3.6000 763 . 56 707 98.0000 . . . 0.2930 0.0000 0.3019 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 3.6000 3.8200 684 . 34 650 99.0000 . . . 0.2973 0.0000 0.2624 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 3.8200 4.1100 752 . 34 718 99.0000 . . . 0.2346 0.0000 0.2288 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 4.1100 4.5300 739 . 57 682 100.0000 . . . 0.3440 0.0000 0.2574 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 4.5300 5.1800 733 . 55 678 98.0000 . . . 0.1852 0.0000 0.2267 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 5.1800 6.5000 727 . 36 691 99.0000 . . . 0.2429 0.0000 0.1816 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 6.5100 25.1700 739 . 38 701 100.0000 . . . 0.2013 0.0000 0.1725 . . . . . . . 10 . . . # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 'chain A' 1 2 'chain B' 2 1 'chain A' 2 2 'chain B' # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 A G 1 . A C 71 . A G 13 A C 83 ? 'chain A' 1 2 1 B G 1 . B C 71 . B G 13 B C 83 ? 'chain B' 2 1 1 C ADE . . C ADE . . A ADE 101 A ADE 101 ? 'chain X' 2 2 1 H ADE . . H ADE . . B ADE 101 B ADE 101 ? 'chain Y' # loop_ _struct_ncs_ens.id _struct_ncs_ens.details 1 ? 2 ? # _struct.entry_id 6VWT _struct.title 'Transitional unit cell 1 of adenine riboswitch aptamer crystal phase transition upon ligand binding' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6VWT _struct_keywords.text 'riboswitch, phase transition, time-resolved, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 1 OP1 ? ? ? 1_555 D MG . MG ? ? A G 13 A MG 102 1_555 ? ? ? ? ? ? ? 2.142 ? ? metalc2 metalc ? ? A G 1 OP2 ? ? ? 1_555 E MG . MG ? ? A G 13 A MG 103 1_555 ? ? ? ? ? ? ? 1.973 ? ? metalc3 metalc ? ? A A 11 OP2 ? ? ? 1_555 F MG . MG ? ? A A 23 A MG 104 1_555 ? ? ? ? ? ? ? 2.092 ? ? metalc4 metalc ? ? A A 12 OP1 ? ? ? 1_555 G MG . MG ? ? A A 24 A MG 105 1_555 ? ? ? ? ? ? ? 2.063 ? ? metalc5 metalc ? ? A C 71 OP2 ? ? ? 1_555 J MG . MG ? ? A C 83 B MG 103 1_655 ? ? ? ? ? ? ? 2.667 ? ? metalc6 metalc ? ? E MG . MG ? ? ? 1_455 B C 71 OP2 ? ? A MG 103 B C 83 1_555 ? ? ? ? ? ? ? 2.820 ? ? metalc7 metalc ? ? B G 1 OP1 ? ? ? 1_555 I MG . MG ? ? B G 13 B MG 102 1_555 ? ? ? ? ? ? ? 2.080 ? ? metalc8 metalc ? ? B G 1 OP2 ? ? ? 1_555 J MG . MG ? ? B G 13 B MG 103 1_555 ? ? ? ? ? ? ? 1.925 ? ? metalc9 metalc ? ? B A 11 OP2 ? ? ? 1_555 K MG . MG ? ? B A 23 B MG 104 1_555 ? ? ? ? ? ? ? 2.130 ? ? metalc10 metalc ? ? B A 12 OP1 ? ? ? 1_555 L MG . MG ? ? B A 24 B MG 105 1_555 ? ? ? ? ? ? ? 2.012 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 71 N3 ? ? A G 13 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 71 O2 ? ? A G 13 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 71 N4 ? ? A G 13 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 70 N3 ? ? A G 14 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 70 O2 ? ? A G 14 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 70 N4 ? ? A G 14 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 69 N3 ? ? A G 15 A C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 69 O2 ? ? A G 15 A C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 69 N4 ? ? A G 15 A C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 68 N3 ? ? A A 16 A U 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 68 O4 ? ? A A 16 A U 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 67 N3 ? ? A A 17 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 67 O4 ? ? A A 17 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 18 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 18 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 18 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 65 N3 ? ? A A 19 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 65 O4 ? ? A A 19 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 64 N1 ? ? A U 20 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 64 N6 ? ? A U 20 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 9 N1 ? ? ? 1_555 A U 63 N3 ? ? A A 21 A U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A A 9 N6 ? ? ? 1_555 A U 63 O4 ? ? A A 21 A U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 10 N3 ? ? ? 1_555 A A 40 N1 ? ? A U 22 A A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 10 O4 ? ? ? 1_555 A A 40 N6 ? ? A U 22 A A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A A 11 N1 ? ? ? 1_555 A G 34 N2 ? ? A A 23 A G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog26 hydrog ? ? A A 11 N6 ? ? ? 1_555 A G 34 N3 ? ? A A 23 A G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog27 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 33 N1 ? ? A U 25 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 13 O4 ? ? ? 1_555 A A 33 N6 ? ? A U 25 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 26 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 26 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 26 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 31 N1 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 31 O6 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 31 N2 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 16 N3 ? ? ? 1_555 A G 30 O6 ? ? A U 28 A G 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog36 hydrog ? ? A U 16 O2 ? ? ? 1_555 A G 30 N1 ? ? A U 28 A G 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog37 hydrog ? ? A A 17 N1 ? ? ? 1_555 A U 29 N3 ? ? A A 29 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 17 N6 ? ? ? 1_555 A U 29 O4 ? ? A A 29 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 18 N1 ? ? ? 1_555 A U 28 N3 ? ? A A 30 A U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A A 18 N6 ? ? ? 1_555 A U 28 O4 ? ? A A 30 A U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A U 19 N3 ? ? ? 1_555 A U 27 O4 ? ? A U 31 A U 39 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog42 hydrog ? ? A U 19 O2 ? ? ? 1_555 A U 27 N3 ? ? A U 31 A U 39 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog43 hydrog ? ? A A 21 N1 ? ? ? 1_555 A A 54 N6 ? ? A A 33 A A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog44 hydrog ? ? A A 21 N6 ? ? ? 1_555 A A 54 N7 ? ? A A 33 A A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog45 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 53 N7 ? ? A U 34 A A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog46 hydrog ? ? A U 22 O2 ? ? ? 1_555 A A 53 N6 ? ? A U 34 A A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog47 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 49 N3 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 49 O2 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 49 N4 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 48 N3 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 48 O2 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 48 N4 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 26 N2 ? ? ? 1_555 A A 54 N1 ? ? A G 38 A A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog54 hydrog ? ? A G 26 N3 ? ? ? 1_555 A A 54 N6 ? ? A G 38 A A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog55 hydrog ? ? A G 34 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 34 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 34 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A U 35 N3 ? ? ? 1_555 A U 39 O4 ? ? A U 47 A U 51 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog59 hydrog ? ? A U 37 N3 ? ? ? 1_555 A A 64 N3 ? ? A U 49 A A 76 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog60 hydrog ? ? A C 38 N4 ? ? ? 1_555 A U 63 O2 ? ? A C 50 A U 75 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog61 hydrog ? ? A C 42 N3 ? ? ? 1_555 A G 60 N1 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 42 N4 ? ? ? 1_555 A G 60 O6 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 42 O2 ? ? ? 1_555 A G 60 N2 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A A 43 N1 ? ? ? 1_555 A U 59 N3 ? ? A A 55 A U 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A A 43 N6 ? ? ? 1_555 A U 59 O4 ? ? A A 55 A U 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A A 44 N1 ? ? ? 1_555 A U 58 N3 ? ? A A 56 A U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A A 44 N6 ? ? ? 1_555 A U 58 O4 ? ? A A 56 A U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 45 N1 ? ? ? 1_555 A C 57 N3 ? ? A G 57 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 45 N2 ? ? ? 1_555 A C 57 O2 ? ? A G 57 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 45 O6 ? ? ? 1_555 A C 57 N4 ? ? A G 57 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A A 46 N1 ? ? ? 1_555 A U 56 N3 ? ? A A 58 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A A 46 N6 ? ? ? 1_555 A U 56 O4 ? ? A A 58 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 47 N1 ? ? ? 1_555 A C 55 N3 ? ? A G 59 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A G 47 N2 ? ? ? 1_555 A C 55 O2 ? ? A G 59 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A G 47 O6 ? ? ? 1_555 A C 55 N4 ? ? A G 59 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 49 O2 ? ? ? 1_555 A A 53 N6 ? ? A C 61 A A 65 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog77 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 71 N3 ? ? B G 13 B C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 71 O2 ? ? B G 13 B C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 71 N4 ? ? B G 13 B C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 70 N3 ? ? B G 14 B C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 70 O2 ? ? B G 14 B C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 70 N4 ? ? B G 14 B C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 69 N3 ? ? B G 15 B C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 69 O2 ? ? B G 15 B C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 69 N4 ? ? B G 15 B C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B A 4 N1 ? ? ? 1_555 B U 68 N3 ? ? B A 16 B U 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B A 4 N6 ? ? ? 1_555 B U 68 O4 ? ? B A 16 B U 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B A 5 N1 ? ? ? 1_555 B U 67 N3 ? ? B A 17 B U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B A 5 N6 ? ? ? 1_555 B U 67 O4 ? ? B A 17 B U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B G 6 N1 ? ? ? 1_555 B C 66 N3 ? ? B G 18 B C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 66 O2 ? ? B G 18 B C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B G 6 O6 ? ? ? 1_555 B C 66 N4 ? ? B G 18 B C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B A 7 N1 ? ? ? 1_555 B U 65 N3 ? ? B A 19 B U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B A 7 N6 ? ? ? 1_555 B U 65 O4 ? ? B A 19 B U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 64 N1 ? ? B U 20 B A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B U 8 O4 ? ? ? 1_555 B A 64 N6 ? ? B U 20 B A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B A 9 N1 ? ? ? 1_555 B U 63 N3 ? ? B A 21 B U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B A 9 N6 ? ? ? 1_555 B U 63 O4 ? ? B A 21 B U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B U 10 N3 ? ? ? 1_555 B A 40 N1 ? ? B U 22 B A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B U 10 O4 ? ? ? 1_555 B A 40 N6 ? ? B U 22 B A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B A 11 N1 ? ? ? 1_555 B G 34 N2 ? ? B A 23 B G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog102 hydrog ? ? B A 11 N6 ? ? ? 1_555 B G 34 N3 ? ? B A 23 B G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog103 hydrog ? ? B U 13 N3 ? ? ? 1_555 B A 33 N1 ? ? B U 25 B A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B U 13 O4 ? ? ? 1_555 B A 33 N6 ? ? B U 25 B A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B C 14 N3 ? ? ? 1_555 B G 32 N1 ? ? B C 26 B G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B C 14 N4 ? ? ? 1_555 B G 32 O6 ? ? B C 26 B G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B C 14 O2 ? ? ? 1_555 B G 32 N2 ? ? B C 26 B G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B C 15 N3 ? ? ? 1_555 B G 31 N1 ? ? B C 27 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B C 15 N4 ? ? ? 1_555 B G 31 O6 ? ? B C 27 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? B C 15 O2 ? ? ? 1_555 B G 31 N2 ? ? B C 27 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? B U 16 N3 ? ? ? 1_555 B G 30 O6 ? ? B U 28 B G 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog112 hydrog ? ? B U 16 O2 ? ? ? 1_555 B G 30 N1 ? ? B U 28 B G 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog113 hydrog ? ? B A 17 N1 ? ? ? 1_555 B U 29 N3 ? ? B A 29 B U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? B A 17 N6 ? ? ? 1_555 B U 29 O4 ? ? B A 29 B U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? B A 18 N1 ? ? ? 1_555 B U 28 N3 ? ? B A 30 B U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? B A 18 N6 ? ? ? 1_555 B U 28 O4 ? ? B A 30 B U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? B U 19 N3 ? ? ? 1_555 B U 27 O4 ? ? B U 31 B U 39 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog118 hydrog ? ? B U 19 O2 ? ? ? 1_555 B U 27 N3 ? ? B U 31 B U 39 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog119 hydrog ? ? B A 21 N1 ? ? ? 1_555 B A 54 N6 ? ? B A 33 B A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog120 hydrog ? ? B A 21 N6 ? ? ? 1_555 B A 54 N7 ? ? B A 33 B A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog121 hydrog ? ? B U 22 N3 ? ? ? 1_555 B A 53 N7 ? ? B U 34 B A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog122 hydrog ? ? B U 22 O2 ? ? ? 1_555 B A 53 N6 ? ? B U 34 B A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog123 hydrog ? ? B G 25 N1 ? ? ? 1_555 B C 49 N3 ? ? B G 37 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? B G 25 N2 ? ? ? 1_555 B C 49 O2 ? ? B G 37 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? B G 25 O6 ? ? ? 1_555 B C 49 N4 ? ? B G 37 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog126 hydrog ? ? B G 26 N1 ? ? ? 1_555 B C 48 N3 ? ? B G 38 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? B G 26 N2 ? ? ? 1_555 B C 48 O2 ? ? B G 38 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog128 hydrog ? ? B G 26 O6 ? ? ? 1_555 B C 48 N4 ? ? B G 38 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog129 hydrog ? ? B G 26 N2 ? ? ? 1_555 B A 54 N1 ? ? B G 38 B A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog130 hydrog ? ? B G 26 N3 ? ? ? 1_555 B A 54 N6 ? ? B G 38 B A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog131 hydrog ? ? B G 34 N1 ? ? ? 1_555 B C 41 N3 ? ? B G 46 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog132 hydrog ? ? B G 34 N2 ? ? ? 1_555 B C 41 O2 ? ? B G 46 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog133 hydrog ? ? B G 34 O6 ? ? ? 1_555 B C 41 N4 ? ? B G 46 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog134 hydrog ? ? B U 35 N3 ? ? ? 1_555 B U 39 O4 ? ? B U 47 B U 51 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog135 hydrog ? ? B U 37 N3 ? ? ? 1_555 B A 64 N3 ? ? B U 49 B A 76 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog136 hydrog ? ? B C 38 N4 ? ? ? 1_555 B U 63 O2 ? ? B C 50 B U 75 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog137 hydrog ? ? B C 42 N3 ? ? ? 1_555 B G 60 N1 ? ? B C 54 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog138 hydrog ? ? B C 42 N4 ? ? ? 1_555 B G 60 O6 ? ? B C 54 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog139 hydrog ? ? B C 42 O2 ? ? ? 1_555 B G 60 N2 ? ? B C 54 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog140 hydrog ? ? B A 43 N1 ? ? ? 1_555 B U 59 N3 ? ? B A 55 B U 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog141 hydrog ? ? B A 43 N6 ? ? ? 1_555 B U 59 O4 ? ? B A 55 B U 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog142 hydrog ? ? B A 44 N1 ? ? ? 1_555 B U 58 N3 ? ? B A 56 B U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog143 hydrog ? ? B A 44 N6 ? ? ? 1_555 B U 58 O4 ? ? B A 56 B U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog144 hydrog ? ? B G 45 N1 ? ? ? 1_555 B C 57 N3 ? ? B G 57 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog145 hydrog ? ? B G 45 N2 ? ? ? 1_555 B C 57 O2 ? ? B G 57 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog146 hydrog ? ? B G 45 O6 ? ? ? 1_555 B C 57 N4 ? ? B G 57 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog147 hydrog ? ? B A 46 N1 ? ? ? 1_555 B U 56 N3 ? ? B A 58 B U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog148 hydrog ? ? B A 46 N6 ? ? ? 1_555 B U 56 O4 ? ? B A 58 B U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog149 hydrog ? ? B G 47 N1 ? ? ? 1_555 B C 55 N3 ? ? B G 59 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog150 hydrog ? ? B G 47 N2 ? ? ? 1_555 B C 55 O2 ? ? B G 59 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog151 hydrog ? ? B G 47 O6 ? ? ? 1_555 B C 55 N4 ? ? B G 59 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog152 hydrog ? ? B C 49 O2 ? ? ? 1_555 B A 53 N6 ? ? B C 61 B A 65 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _atom_sites.entry_id 6VWT _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.019865 _atom_sites.fract_transf_matrix[1][2] 0.000073 _atom_sites.fract_transf_matrix[1][3] 0.000205 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.039683 _atom_sites.fract_transf_matrix[2][3] 0.006493 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012870 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C K MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 13 13 G G A . n A 1 2 G 2 14 14 G G A . n A 1 3 G 3 15 15 G G A . n A 1 4 A 4 16 16 A A A . n A 1 5 A 5 17 17 A A A . n A 1 6 G 6 18 18 G G A . n A 1 7 A 7 19 19 A A A . n A 1 8 U 8 20 20 U U A . n A 1 9 A 9 21 21 A A A . n A 1 10 U 10 22 22 U U A . n A 1 11 A 11 23 23 A A A . n A 1 12 A 12 24 24 A A A . n A 1 13 U 13 25 25 U U A . n A 1 14 C 14 26 26 C C A . n A 1 15 C 15 27 27 C C A . n A 1 16 U 16 28 28 U U A . n A 1 17 A 17 29 29 A A A . n A 1 18 A 18 30 30 A A A . n A 1 19 U 19 31 31 U U A . n A 1 20 G 20 32 32 G G A . n A 1 21 A 21 33 33 A A A . n A 1 22 U 22 34 34 U U A . n A 1 23 A 23 35 35 A A A . n A 1 24 U 24 36 36 U U A . n A 1 25 G 25 37 37 G G A . n A 1 26 G 26 38 38 G G A . n A 1 27 U 27 39 39 U U A . n A 1 28 U 28 40 40 U U A . n A 1 29 U 29 41 41 U U A . n A 1 30 G 30 42 42 G G A . n A 1 31 G 31 43 43 G G A . n A 1 32 G 32 44 44 G G A . n A 1 33 A 33 45 45 A A A . n A 1 34 G 34 46 46 G G A . n A 1 35 U 35 47 47 U U A . n A 1 36 U 36 48 48 U U A . n A 1 37 U 37 49 49 U U A . n A 1 38 C 38 50 50 C C A . n A 1 39 U 39 51 51 U U A . n A 1 40 A 40 52 52 A A A . n A 1 41 C 41 53 53 C C A . n A 1 42 C 42 54 54 C C A . n A 1 43 A 43 55 55 A A A . n A 1 44 A 44 56 56 A A A . n A 1 45 G 45 57 57 G G A . n A 1 46 A 46 58 58 A A A . n A 1 47 G 47 59 59 G G A . n A 1 48 C 48 60 60 C C A . n A 1 49 C 49 61 61 C C A . n A 1 50 U 50 62 62 U U A . n A 1 51 U 51 63 63 U U A . n A 1 52 A 52 64 64 A A A . n A 1 53 A 53 65 65 A A A . n A 1 54 A 54 66 66 A A A . n A 1 55 C 55 67 67 C C A . n A 1 56 U 56 68 68 U U A . n A 1 57 C 57 69 69 C C A . n A 1 58 U 58 70 70 U U A . n A 1 59 U 59 71 71 U U A . n A 1 60 G 60 72 72 G G A . n A 1 61 A 61 73 73 A A A . n A 1 62 U 62 74 74 U U A . n A 1 63 U 63 75 75 U U A . n A 1 64 A 64 76 76 A A A . n A 1 65 U 65 77 77 U U A . n A 1 66 C 66 78 78 C C A . n A 1 67 U 67 79 79 U U A . n A 1 68 U 68 80 80 U U A . n A 1 69 C 69 81 81 C C A . n A 1 70 C 70 82 82 C C A . n A 1 71 C 71 83 83 C C A . n B 1 1 G 1 13 13 G G B . n B 1 2 G 2 14 14 G G B . n B 1 3 G 3 15 15 G G B . n B 1 4 A 4 16 16 A A B . n B 1 5 A 5 17 17 A A B . n B 1 6 G 6 18 18 G G B . n B 1 7 A 7 19 19 A A B . n B 1 8 U 8 20 20 U U B . n B 1 9 A 9 21 21 A A B . n B 1 10 U 10 22 22 U U B . n B 1 11 A 11 23 23 A A B . n B 1 12 A 12 24 24 A A B . n B 1 13 U 13 25 25 U U B . n B 1 14 C 14 26 26 C C B . n B 1 15 C 15 27 27 C C B . n B 1 16 U 16 28 28 U U B . n B 1 17 A 17 29 29 A A B . n B 1 18 A 18 30 30 A A B . n B 1 19 U 19 31 31 U U B . n B 1 20 G 20 32 32 G G B . n B 1 21 A 21 33 33 A A B . n B 1 22 U 22 34 34 U U B . n B 1 23 A 23 35 35 A A B . n B 1 24 U 24 36 36 U U B . n B 1 25 G 25 37 37 G G B . n B 1 26 G 26 38 38 G G B . n B 1 27 U 27 39 39 U U B . n B 1 28 U 28 40 40 U U B . n B 1 29 U 29 41 41 U U B . n B 1 30 G 30 42 42 G G B . n B 1 31 G 31 43 43 G G B . n B 1 32 G 32 44 44 G G B . n B 1 33 A 33 45 45 A A B . n B 1 34 G 34 46 46 G G B . n B 1 35 U 35 47 47 U U B . n B 1 36 U 36 48 48 U U B . n B 1 37 U 37 49 49 U U B . n B 1 38 C 38 50 50 C C B . n B 1 39 U 39 51 51 U U B . n B 1 40 A 40 52 52 A A B . n B 1 41 C 41 53 53 C C B . n B 1 42 C 42 54 54 C C B . n B 1 43 A 43 55 55 A A B . n B 1 44 A 44 56 56 A A B . n B 1 45 G 45 57 57 G G B . n B 1 46 A 46 58 58 A A B . n B 1 47 G 47 59 59 G G B . n B 1 48 C 48 60 60 C C B . n B 1 49 C 49 61 61 C C B . n B 1 50 U 50 62 62 U U B . n B 1 51 U 51 63 63 U U B . n B 1 52 A 52 64 64 A A B . n B 1 53 A 53 65 65 A A B . n B 1 54 A 54 66 66 A A B . n B 1 55 C 55 67 67 C C B . n B 1 56 U 56 68 68 U U B . n B 1 57 C 57 69 69 C C B . n B 1 58 U 58 70 70 U U B . n B 1 59 U 59 71 71 U U B . n B 1 60 G 60 72 72 G G B . n B 1 61 A 61 73 73 A A B . n B 1 62 U 62 74 74 U U B . n B 1 63 U 63 75 75 U U B . n B 1 64 A 64 76 76 A A B . n B 1 65 U 65 77 77 U U B . n B 1 66 C 66 78 78 C C B . n B 1 67 U 67 79 79 U U B . n B 1 68 U 68 80 80 U U B . n B 1 69 C 69 81 81 C C B . n B 1 70 C 70 82 82 C C B . n B 1 71 C 71 83 83 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADE 1 101 101 ADE ADE A . D 3 MG 1 102 101 MG MG A . E 3 MG 1 103 102 MG MG A . F 3 MG 1 104 103 MG MG A . G 3 MG 1 105 104 MG MG A . H 2 ADE 1 101 101 ADE ADE B . I 3 MG 1 102 105 MG MG B . J 3 MG 1 103 106 MG MG B . K 3 MG 1 104 107 MG MG B . L 3 MG 1 105 108 MG MG B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G 2 1 B,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A G 1 ? A G 13 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 OP2 ? B C 71 ? B C 83 ? 1_555 31.1 ? 2 OP2 ? A C 71 ? A C 83 ? 1_555 MG ? J MG . ? B MG 103 ? 1_655 OP2 ? B G 1 ? B G 13 ? 1_555 42.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-11-11 2 'Structure model' 1 1 2021-03-10 3 'Structure model' 1 2 2021-10-06 4 'Structure model' 1 3 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 3 'Structure model' citation_author 4 3 'Structure model' database_2 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' pdbx_initial_refinement_model 8 4 'Structure model' struct_ncs_dom_lim # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.pdbx_database_id_DOI' 6 2 'Structure model' '_citation.year' 7 3 'Structure model' '_citation.journal_volume' 8 3 'Structure model' '_citation.page_first' 9 3 'Structure model' '_citation.page_last' 10 3 'Structure model' '_citation.pdbx_database_id_PubMed' 11 3 'Structure model' '_citation.title' 12 3 'Structure model' '_database_2.pdbx_DOI' 13 3 'Structure model' '_database_2.pdbx_database_accession' 14 4 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 15 4 'Structure model' '_struct_ncs_dom_lim.beg_label_asym_id' 16 4 'Structure model' '_struct_ncs_dom_lim.beg_label_comp_id' 17 4 'Structure model' '_struct_ncs_dom_lim.beg_label_seq_id' 18 4 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 19 4 'Structure model' '_struct_ncs_dom_lim.end_label_asym_id' 20 4 'Structure model' '_struct_ncs_dom_lim.end_label_comp_id' 21 4 'Structure model' '_struct_ncs_dom_lim.end_label_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 24.983 _pdbx_refine_tls.origin_y -11.544 _pdbx_refine_tls.origin_z -0.177 _pdbx_refine_tls.T[1][1] 0.4551 _pdbx_refine_tls.T[2][2] 0.5763 _pdbx_refine_tls.T[3][3] 0.7094 _pdbx_refine_tls.T[1][2] 0.0010 _pdbx_refine_tls.T[1][3] 0.0019 _pdbx_refine_tls.T[2][3] 0.0008 _pdbx_refine_tls.L[1][1] -0.5502 _pdbx_refine_tls.L[2][2] 1.0658 _pdbx_refine_tls.L[3][3] 5.0676 _pdbx_refine_tls.L[1][2] -0.0178 _pdbx_refine_tls.L[1][3] 0.3020 _pdbx_refine_tls.L[2][3] -0.0210 _pdbx_refine_tls.S[1][1] -0.0777 _pdbx_refine_tls.S[2][2] -0.0059 _pdbx_refine_tls.S[3][3] 0.0642 _pdbx_refine_tls.S[1][2] 0.0038 _pdbx_refine_tls.S[1][3] -0.0986 _pdbx_refine_tls.S[2][3] 0.0032 _pdbx_refine_tls.S[2][1] -0.0163 _pdbx_refine_tls.S[3][1] -0.0520 _pdbx_refine_tls.S[3][2] 0.0032 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 13 A 83 ;( CHAIN A AND ( RESID 13:83 OR RESID 101:101 OR RESID 102:105 ) ) OR ( CHAIN B AND ( RESID 102:105 OR RESID 13:83 OR RESID 101:101 ) ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 1 A 101 A 101 ;( CHAIN A AND ( RESID 13:83 OR RESID 101:101 OR RESID 102:105 ) ) OR ( CHAIN B AND ( RESID 102:105 OR RESID 13:83 OR RESID 101:101 ) ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 1 A 102 A 105 ;( CHAIN A AND ( RESID 13:83 OR RESID 101:101 OR RESID 102:105 ) ) OR ( CHAIN B AND ( RESID 102:105 OR RESID 13:83 OR RESID 101:101 ) ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 1 B 102 B 105 ;( CHAIN A AND ( RESID 13:83 OR RESID 101:101 OR RESID 102:105 ) ) OR ( CHAIN B AND ( RESID 102:105 OR RESID 13:83 OR RESID 101:101 ) ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 5 1 B 13 B 83 ;( CHAIN A AND ( RESID 13:83 OR RESID 101:101 OR RESID 102:105 ) ) OR ( CHAIN B AND ( RESID 102:105 OR RESID 13:83 OR RESID 101:101 ) ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 6 1 B 101 B 101 ;( CHAIN A AND ( RESID 13:83 OR RESID 101:101 OR RESID 102:105 ) ) OR ( CHAIN B AND ( RESID 102:105 OR RESID 13:83 OR RESID 101:101 ) ) ; ? ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.18rc5_3822 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? CrystFEL ? ? ? 0.9.0 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_entry_details.entry_id 6VWT _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A G 13 ? ? OP3 A G 13 ? ? 1.481 1.607 -0.126 0.012 N 2 1 P B G 13 ? ? OP3 B G 13 ? ? 1.481 1.607 -0.126 0.012 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ADE N9 N Y N 38 ADE C8 C Y N 39 ADE N7 N Y N 40 ADE C5 C Y N 41 ADE C6 C Y N 42 ADE N6 N N N 43 ADE N1 N Y N 44 ADE C2 C Y N 45 ADE N3 N Y N 46 ADE C4 C Y N 47 ADE HN9 H N N 48 ADE H8 H N N 49 ADE HN61 H N N 50 ADE HN62 H N N 51 ADE H2 H N N 52 C OP3 O N N 53 C P P N N 54 C OP1 O N N 55 C OP2 O N N 56 C "O5'" O N N 57 C "C5'" C N N 58 C "C4'" C N R 59 C "O4'" O N N 60 C "C3'" C N S 61 C "O3'" O N N 62 C "C2'" C N R 63 C "O2'" O N N 64 C "C1'" C N R 65 C N1 N N N 66 C C2 C N N 67 C O2 O N N 68 C N3 N N N 69 C C4 C N N 70 C N4 N N N 71 C C5 C N N 72 C C6 C N N 73 C HOP3 H N N 74 C HOP2 H N N 75 C "H5'" H N N 76 C "H5''" H N N 77 C "H4'" H N N 78 C "H3'" H N N 79 C "HO3'" H N N 80 C "H2'" H N N 81 C "HO2'" H N N 82 C "H1'" H N N 83 C H41 H N N 84 C H42 H N N 85 C H5 H N N 86 C H6 H N N 87 G OP3 O N N 88 G P P N N 89 G OP1 O N N 90 G OP2 O N N 91 G "O5'" O N N 92 G "C5'" C N N 93 G "C4'" C N R 94 G "O4'" O N N 95 G "C3'" C N S 96 G "O3'" O N N 97 G "C2'" C N R 98 G "O2'" O N N 99 G "C1'" C N R 100 G N9 N Y N 101 G C8 C Y N 102 G N7 N Y N 103 G C5 C Y N 104 G C6 C N N 105 G O6 O N N 106 G N1 N N N 107 G C2 C N N 108 G N2 N N N 109 G N3 N N N 110 G C4 C Y N 111 G HOP3 H N N 112 G HOP2 H N N 113 G "H5'" H N N 114 G "H5''" H N N 115 G "H4'" H N N 116 G "H3'" H N N 117 G "HO3'" H N N 118 G "H2'" H N N 119 G "HO2'" H N N 120 G "H1'" H N N 121 G H8 H N N 122 G H1 H N N 123 G H21 H N N 124 G H22 H N N 125 MG MG MG N N 126 U OP3 O N N 127 U P P N N 128 U OP1 O N N 129 U OP2 O N N 130 U "O5'" O N N 131 U "C5'" C N N 132 U "C4'" C N R 133 U "O4'" O N N 134 U "C3'" C N S 135 U "O3'" O N N 136 U "C2'" C N R 137 U "O2'" O N N 138 U "C1'" C N R 139 U N1 N N N 140 U C2 C N N 141 U O2 O N N 142 U N3 N N N 143 U C4 C N N 144 U O4 O N N 145 U C5 C N N 146 U C6 C N N 147 U HOP3 H N N 148 U HOP2 H N N 149 U "H5'" H N N 150 U "H5''" H N N 151 U "H4'" H N N 152 U "H3'" H N N 153 U "HO3'" H N N 154 U "H2'" H N N 155 U "HO2'" H N N 156 U "H1'" H N N 157 U H3 H N N 158 U H5 H N N 159 U H6 H N N 160 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ADE N9 C8 sing Y N 40 ADE N9 C4 sing Y N 41 ADE N9 HN9 sing N N 42 ADE C8 N7 doub Y N 43 ADE C8 H8 sing N N 44 ADE N7 C5 sing Y N 45 ADE C5 C6 sing Y N 46 ADE C5 C4 doub Y N 47 ADE C6 N6 sing N N 48 ADE C6 N1 doub Y N 49 ADE N6 HN61 sing N N 50 ADE N6 HN62 sing N N 51 ADE N1 C2 sing Y N 52 ADE C2 N3 doub Y N 53 ADE C2 H2 sing N N 54 ADE N3 C4 sing Y N 55 C OP3 P sing N N 56 C OP3 HOP3 sing N N 57 C P OP1 doub N N 58 C P OP2 sing N N 59 C P "O5'" sing N N 60 C OP2 HOP2 sing N N 61 C "O5'" "C5'" sing N N 62 C "C5'" "C4'" sing N N 63 C "C5'" "H5'" sing N N 64 C "C5'" "H5''" sing N N 65 C "C4'" "O4'" sing N N 66 C "C4'" "C3'" sing N N 67 C "C4'" "H4'" sing N N 68 C "O4'" "C1'" sing N N 69 C "C3'" "O3'" sing N N 70 C "C3'" "C2'" sing N N 71 C "C3'" "H3'" sing N N 72 C "O3'" "HO3'" sing N N 73 C "C2'" "O2'" sing N N 74 C "C2'" "C1'" sing N N 75 C "C2'" "H2'" sing N N 76 C "O2'" "HO2'" sing N N 77 C "C1'" N1 sing N N 78 C "C1'" "H1'" sing N N 79 C N1 C2 sing N N 80 C N1 C6 sing N N 81 C C2 O2 doub N N 82 C C2 N3 sing N N 83 C N3 C4 doub N N 84 C C4 N4 sing N N 85 C C4 C5 sing N N 86 C N4 H41 sing N N 87 C N4 H42 sing N N 88 C C5 C6 doub N N 89 C C5 H5 sing N N 90 C C6 H6 sing N N 91 G OP3 P sing N N 92 G OP3 HOP3 sing N N 93 G P OP1 doub N N 94 G P OP2 sing N N 95 G P "O5'" sing N N 96 G OP2 HOP2 sing N N 97 G "O5'" "C5'" sing N N 98 G "C5'" "C4'" sing N N 99 G "C5'" "H5'" sing N N 100 G "C5'" "H5''" sing N N 101 G "C4'" "O4'" sing N N 102 G "C4'" "C3'" sing N N 103 G "C4'" "H4'" sing N N 104 G "O4'" "C1'" sing N N 105 G "C3'" "O3'" sing N N 106 G "C3'" "C2'" sing N N 107 G "C3'" "H3'" sing N N 108 G "O3'" "HO3'" sing N N 109 G "C2'" "O2'" sing N N 110 G "C2'" "C1'" sing N N 111 G "C2'" "H2'" sing N N 112 G "O2'" "HO2'" sing N N 113 G "C1'" N9 sing N N 114 G "C1'" "H1'" sing N N 115 G N9 C8 sing Y N 116 G N9 C4 sing Y N 117 G C8 N7 doub Y N 118 G C8 H8 sing N N 119 G N7 C5 sing Y N 120 G C5 C6 sing N N 121 G C5 C4 doub Y N 122 G C6 O6 doub N N 123 G C6 N1 sing N N 124 G N1 C2 sing N N 125 G N1 H1 sing N N 126 G C2 N2 sing N N 127 G C2 N3 doub N N 128 G N2 H21 sing N N 129 G N2 H22 sing N N 130 G N3 C4 sing N N 131 U OP3 P sing N N 132 U OP3 HOP3 sing N N 133 U P OP1 doub N N 134 U P OP2 sing N N 135 U P "O5'" sing N N 136 U OP2 HOP2 sing N N 137 U "O5'" "C5'" sing N N 138 U "C5'" "C4'" sing N N 139 U "C5'" "H5'" sing N N 140 U "C5'" "H5''" sing N N 141 U "C4'" "O4'" sing N N 142 U "C4'" "C3'" sing N N 143 U "C4'" "H4'" sing N N 144 U "O4'" "C1'" sing N N 145 U "C3'" "O3'" sing N N 146 U "C3'" "C2'" sing N N 147 U "C3'" "H3'" sing N N 148 U "O3'" "HO3'" sing N N 149 U "C2'" "O2'" sing N N 150 U "C2'" "C1'" sing N N 151 U "C2'" "H2'" sing N N 152 U "O2'" "HO2'" sing N N 153 U "C1'" N1 sing N N 154 U "C1'" "H1'" sing N N 155 U N1 C2 sing N N 156 U N1 C6 sing N N 157 U C2 O2 doub N N 158 U C2 N3 sing N N 159 U N3 C4 sing N N 160 U N3 H3 sing N N 161 U C4 O4 doub N N 162 U C4 C5 sing N N 163 U C5 C6 doub N N 164 U C5 H5 sing N N 165 U C6 H6 sing N N 166 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6VWT 'double helix' 6VWT 'a-form double helix' 6VWT 'mismatched base pair' 6VWT 'internal loop' 6VWT 'triple helix' 6VWT 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 71 1_555 -0.115 -0.199 0.286 0.462 -5.218 -5.140 1 A_G13:C83_A A 13 ? A 83 ? 19 1 1 A G 2 1_555 A C 70 1_555 -0.182 -0.170 0.012 -4.251 -2.849 0.500 2 A_G14:C82_A A 14 ? A 82 ? 19 1 1 A G 3 1_555 A C 69 1_555 -0.136 -0.135 0.012 -3.149 -0.210 0.299 3 A_G15:C81_A A 15 ? A 81 ? 19 1 1 A A 4 1_555 A U 68 1_555 0.075 -0.097 -0.148 -7.858 -0.612 1.686 4 A_A16:U80_A A 16 ? A 80 ? 20 1 1 A A 5 1_555 A U 67 1_555 0.069 -0.085 -0.060 -4.681 3.213 0.613 5 A_A17:U79_A A 17 ? A 79 ? 20 1 1 A G 6 1_555 A C 66 1_555 -0.181 -0.157 0.311 -2.483 3.841 3.108 6 A_G18:C78_A A 18 ? A 78 ? 19 1 1 A A 7 1_555 A U 65 1_555 0.033 -0.167 0.506 -0.954 2.037 5.695 7 A_A19:U77_A A 19 ? A 77 ? 20 1 1 A U 8 1_555 A A 64 1_555 0.007 -0.228 0.565 -0.829 -2.217 3.553 8 A_U20:A76_A A 20 ? A 76 ? 20 1 1 A A 9 1_555 A U 63 1_555 0.090 -0.075 -0.344 -4.833 -7.909 2.374 9 A_A21:U75_A A 21 ? A 75 ? 20 1 1 A U 35 1_555 A U 39 1_555 3.499 -0.524 0.661 34.859 48.225 -76.416 10 A_U47:U51_A A 47 ? A 51 ? ? ? 1 A U 10 1_555 A A 40 1_555 -0.009 -0.143 -0.037 5.625 7.902 1.327 11 A_U22:A52_A A 22 ? A 52 ? 20 1 1 A G 34 1_555 A C 41 1_555 -0.183 -0.164 -0.573 -11.158 -1.124 -0.576 12 A_G46:C53_A A 46 ? A 53 ? 19 1 1 A A 33 1_555 A U 13 1_555 0.040 -0.115 -0.096 3.356 -2.234 2.438 13 A_A45:U25_A A 45 ? A 25 ? 20 1 1 A G 32 1_555 A C 14 1_555 -0.191 -0.144 0.146 -1.141 -2.218 2.324 14 A_G44:C26_A A 44 ? A 26 ? 19 1 1 A G 31 1_555 A C 15 1_555 -0.183 -0.134 -0.064 -0.232 -0.511 2.900 15 A_G43:C27_A A 43 ? A 27 ? 19 1 1 A G 30 1_555 A U 16 1_555 -1.523 -0.390 0.142 -1.117 1.399 5.320 16 A_G42:U28_A A 42 ? A 28 ? 28 1 1 A U 29 1_555 A A 17 1_555 0.051 -0.140 -0.169 5.859 -2.132 4.320 17 A_U41:A29_A A 41 ? A 29 ? 20 1 1 A U 28 1_555 A A 18 1_555 -0.060 -0.145 0.757 -12.061 -5.375 1.442 18 A_U40:A30_A A 40 ? A 30 ? 20 1 1 A U 27 1_555 A U 19 1_555 -2.855 -1.930 0.670 -5.871 -20.835 12.939 19 A_U39:U31_A A 39 ? A 31 ? 16 1 1 A C 48 1_555 A G 26 1_555 0.087 -0.200 0.700 -5.686 -2.981 -1.344 20 A_C60:G38_A A 60 ? A 38 ? 19 1 1 A A 21 1_555 A A 54 1_555 4.005 1.706 1.186 7.650 -3.394 -116.111 21 A_A33:A66_A A 33 ? A 66 ? 5 4 1 A U 22 1_555 A A 53 1_555 3.607 -1.273 0.532 2.061 -2.639 -99.817 22 A_U34:A65_A A 34 ? A 65 ? 24 4 1 A C 42 1_555 A G 60 1_555 0.214 -0.110 -0.025 -6.950 -4.807 0.640 23 A_C54:G72_A A 54 ? A 72 ? 19 1 1 A A 43 1_555 A U 59 1_555 0.031 -0.155 0.528 -2.311 -4.031 -0.688 24 A_A55:U71_A A 55 ? A 71 ? 20 1 1 A A 44 1_555 A U 58 1_555 0.163 -0.119 0.630 1.108 -3.534 -2.403 25 A_A56:U70_A A 56 ? A 70 ? 20 1 1 A G 45 1_555 A C 57 1_555 -0.143 -0.148 0.377 2.074 -3.831 0.452 26 A_G57:C69_A A 57 ? A 69 ? 19 1 1 A A 46 1_555 A U 56 1_555 0.091 -0.142 0.278 1.510 -6.248 2.628 27 A_A58:U68_A A 58 ? A 68 ? 20 1 1 A G 47 1_555 A C 55 1_555 -0.230 -0.156 0.296 -3.161 -10.804 1.918 28 A_G59:C67_A A 59 ? A 67 ? 19 1 1 B G 1 1_555 B C 71 1_555 -0.110 -0.207 0.273 0.439 -4.683 -5.498 29 B_G13:C83_B B 13 ? B 83 ? 19 1 1 B G 2 1_555 B C 70 1_555 -0.182 -0.171 0.013 -4.223 -2.858 0.519 30 B_G14:C82_B B 14 ? B 82 ? 19 1 1 B G 3 1_555 B C 69 1_555 -0.137 -0.134 0.013 -3.132 -0.199 0.312 31 B_G15:C81_B B 15 ? B 81 ? 19 1 1 B A 4 1_555 B U 68 1_555 0.075 -0.096 -0.149 -7.863 -0.621 1.690 32 B_A16:U80_B B 16 ? B 80 ? 20 1 1 B A 5 1_555 B U 67 1_555 0.068 -0.085 -0.060 -4.684 3.228 0.609 33 B_A17:U79_B B 17 ? B 79 ? 20 1 1 B G 6 1_555 B C 66 1_555 -0.180 -0.157 0.311 -2.450 3.880 3.107 34 B_G18:C78_B B 18 ? B 78 ? 19 1 1 B A 7 1_555 B U 65 1_555 0.034 -0.167 0.507 -0.984 2.060 5.705 35 B_A19:U77_B B 19 ? B 77 ? 20 1 1 B U 8 1_555 B A 64 1_555 0.008 -0.228 0.563 -0.828 -2.207 3.560 36 B_U20:A76_B B 20 ? B 76 ? 20 1 1 B A 9 1_555 B U 63 1_555 0.090 -0.075 -0.345 -4.886 -7.895 2.377 37 B_A21:U75_B B 21 ? B 75 ? 20 1 1 B U 35 1_555 B U 39 1_555 3.499 -0.525 0.659 34.855 48.230 -76.412 38 B_U47:U51_B B 47 ? B 51 ? ? ? 1 B U 10 1_555 B A 40 1_555 -0.010 -0.144 -0.038 5.619 7.876 1.303 39 B_U22:A52_B B 22 ? B 52 ? 20 1 1 B G 34 1_555 B C 41 1_555 -0.183 -0.165 -0.574 -11.109 -1.070 -0.583 40 B_G46:C53_B B 46 ? B 53 ? 19 1 1 B A 33 1_555 B U 13 1_555 0.040 -0.115 -0.098 3.316 -2.209 2.452 41 B_A45:U25_B B 45 ? B 25 ? 20 1 1 B G 32 1_555 B C 14 1_555 -0.192 -0.144 0.146 -1.118 -2.205 2.327 42 B_G44:C26_B B 44 ? B 26 ? 19 1 1 B G 31 1_555 B C 15 1_555 -0.183 -0.135 -0.065 -0.231 -0.508 2.888 43 B_G43:C27_B B 43 ? B 27 ? 19 1 1 B G 30 1_555 B U 16 1_555 -1.523 -0.390 0.144 -1.123 1.351 5.302 44 B_G42:U28_B B 42 ? B 28 ? 28 1 1 B U 29 1_555 B A 17 1_555 0.052 -0.139 -0.169 5.886 -2.129 4.317 45 B_U41:A29_B B 41 ? B 29 ? 20 1 1 B U 28 1_555 B A 18 1_555 -0.059 -0.145 0.759 -12.098 -5.389 1.446 46 B_U40:A30_B B 40 ? B 30 ? 20 1 1 B U 27 1_555 B U 19 1_555 -2.855 -1.931 0.669 -5.880 -20.869 12.924 47 B_U39:U31_B B 39 ? B 31 ? 16 1 1 B C 48 1_555 B G 26 1_555 0.086 -0.200 0.699 -5.682 -3.008 -1.358 48 B_C60:G38_B B 60 ? B 38 ? 19 1 1 B A 21 1_555 B A 54 1_555 4.004 1.706 1.186 7.636 -3.386 -116.109 49 B_A33:A66_B B 33 ? B 66 ? 5 4 1 B U 22 1_555 B A 53 1_555 3.607 -1.274 0.533 2.065 -2.637 -99.821 50 B_U34:A65_B B 34 ? B 65 ? 24 4 1 B C 42 1_555 B G 60 1_555 0.214 -0.110 -0.029 -6.954 -4.851 0.648 51 B_C54:G72_B B 54 ? B 72 ? 19 1 1 B A 43 1_555 B U 59 1_555 0.031 -0.155 0.526 -2.315 -4.046 -0.681 52 B_A55:U71_B B 55 ? B 71 ? 20 1 1 B A 44 1_555 B U 58 1_555 0.163 -0.118 0.628 1.107 -3.551 -2.381 53 B_A56:U70_B B 56 ? B 70 ? 20 1 1 B G 45 1_555 B C 57 1_555 -0.143 -0.148 0.374 2.067 -3.763 0.459 54 B_G57:C69_B B 57 ? B 69 ? 19 1 1 B A 46 1_555 B U 56 1_555 0.091 -0.141 0.279 1.503 -6.291 2.629 55 B_A58:U68_B B 58 ? B 68 ? 20 1 1 B G 47 1_555 B C 55 1_555 -0.229 -0.155 0.294 -3.148 -10.774 1.918 56 B_G59:C67_B B 59 ? B 67 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 71 1_555 A G 2 1_555 A C 70 1_555 -0.090 -1.440 3.234 -0.829 4.630 39.467 -2.638 0.040 3.053 6.827 1.223 39.735 1 AA_G13G14:C82C83_AA A 13 ? A 83 ? A 14 ? A 82 ? 1 A G 2 1_555 A C 70 1_555 A G 3 1_555 A C 69 1_555 0.138 -1.657 3.032 0.599 4.900 31.937 -3.751 -0.153 2.756 8.840 -1.080 32.307 2 AA_G14G15:C81C82_AA A 14 ? A 82 ? A 15 ? A 81 ? 1 A G 3 1_555 A C 69 1_555 A A 4 1_555 A U 68 1_555 0.481 -1.857 3.233 2.750 11.399 31.354 -4.925 -0.427 2.460 20.228 -4.879 33.424 3 AA_G15A16:U80C81_AA A 15 ? A 81 ? A 16 ? A 80 ? 1 A A 4 1_555 A U 68 1_555 A A 5 1_555 A U 67 1_555 -0.100 -1.443 3.194 -1.585 4.066 31.311 -3.365 -0.095 2.988 7.487 2.919 31.606 4 AA_A16A17:U79U80_AA A 16 ? A 80 ? A 17 ? A 79 ? 1 A A 5 1_555 A U 67 1_555 A G 6 1_555 A C 66 1_555 0.411 -1.731 3.105 -2.529 4.422 29.266 -4.219 -1.284 2.774 8.670 4.958 29.696 5 AA_A17G18:C78U79_AA A 17 ? A 79 ? A 18 ? A 78 ? 1 A G 6 1_555 A C 66 1_555 A A 7 1_555 A U 65 1_555 0.091 -1.711 3.073 -1.847 5.221 31.997 -3.883 -0.453 2.757 9.383 3.320 32.460 6 AA_G18A19:U77C78_AA A 18 ? A 78 ? A 19 ? A 77 ? 1 A A 7 1_555 A U 65 1_555 A U 8 1_555 A A 64 1_555 -0.003 -1.596 3.271 1.436 5.704 35.658 -3.349 0.200 2.986 9.237 -2.326 36.125 7 AA_A19U20:A76U77_AA A 19 ? A 77 ? A 20 ? A 76 ? 1 A U 8 1_555 A A 64 1_555 A A 9 1_555 A U 63 1_555 0.452 -1.705 3.057 12.760 24.170 31.430 -4.488 0.458 1.507 37.066 -19.567 41.424 8 AA_U20A21:U75A76_AA A 20 ? A 76 ? A 21 ? A 75 ? 1 A A 9 1_555 A U 63 1_555 A U 35 1_555 A U 39 1_555 2.917 3.429 4.967 -30.209 -164.798 107.380 2.792 -1.658 1.711 -83.582 15.321 172.633 9 AA_A21U47:U51U75_AA A 21 ? A 75 ? A 47 ? A 51 ? 1 A U 35 1_555 A U 39 1_555 A U 10 1_555 A A 40 1_555 -0.339 0.733 -2.794 -7.575 -23.993 -3.817 -6.546 0.771 0.167 77.730 -24.542 -25.443 10 AA_U47U22:A52U51_AA A 47 ? A 51 ? A 22 ? A 52 ? 1 A U 10 1_555 A A 40 1_555 A G 34 1_555 A C 41 1_555 1.817 0.328 -3.304 4.849 -7.094 -41.236 -1.215 2.012 -3.388 9.943 6.796 -42.083 11 AA_U22G46:C53A52_AA A 22 ? A 52 ? A 46 ? A 53 ? 1 A G 34 1_555 A C 41 1_555 A A 33 1_555 A U 13 1_555 -2.582 0.283 -3.786 -16.665 -2.499 -50.795 -0.518 -1.523 -4.358 2.825 -18.842 -53.341 12 AA_G46A45:U25C53_AA A 46 ? A 53 ? A 45 ? A 25 ? 1 A A 33 1_555 A U 13 1_555 A G 32 1_555 A C 14 1_555 0.102 1.829 -3.126 -3.704 -2.232 -33.111 -3.531 0.752 -2.971 3.896 -6.466 -33.384 13 AA_A45G44:C26U25_AA A 45 ? A 25 ? A 44 ? A 26 ? 1 A G 32 1_555 A C 14 1_555 A G 31 1_555 A C 15 1_555 -0.037 1.798 -3.287 -0.058 -1.192 -32.092 -3.463 -0.057 -3.220 2.155 -0.106 -32.113 14 AA_G44G43:C27C26_AA A 44 ? A 26 ? A 43 ? A 27 ? 1 A G 31 1_555 A C 15 1_555 A G 30 1_555 A U 16 1_555 -0.044 1.889 -3.335 -0.338 -1.305 -31.879 -3.676 -0.018 -3.257 2.374 -0.614 -31.906 15 AA_G43G42:U28C27_AA A 43 ? A 27 ? A 42 ? A 28 ? 1 A G 30 1_555 A U 16 1_555 A U 29 1_555 A A 17 1_555 -0.055 1.667 -3.179 6.973 -12.998 -29.656 -4.847 -1.125 -2.208 23.642 12.683 -33.048 16 AA_G42U41:A29U28_AA A 42 ? A 28 ? A 41 ? A 29 ? 1 A U 29 1_555 A A 17 1_555 A U 28 1_555 A A 18 1_555 -0.302 2.123 -2.773 -8.659 -4.562 -19.960 -6.887 1.828 -2.180 12.255 -23.261 -22.209 17 AA_U41U40:A30A29_AA A 41 ? A 29 ? A 40 ? A 30 ? 1 A U 28 1_555 A A 18 1_555 A U 27 1_555 A U 19 1_555 0.605 1.281 -3.666 1.513 0.916 -45.900 -1.553 0.629 -3.706 -1.174 1.939 -45.932 18 AA_U40U39:U31A30_AA A 40 ? A 30 ? A 39 ? A 31 ? 1 A C 48 1_555 A G 26 1_555 A A 21 1_555 A A 54 1_555 0.435 -5.956 1.857 1.963 -4.058 -121.726 3.429 0.259 1.735 2.323 1.123 -121.775 19 AA_C60A33:A66G38_AA A 60 ? A 38 ? A 33 ? A 66 ? 1 A A 21 1_555 A A 54 1_555 A U 22 1_555 A A 53 1_555 -0.410 -1.448 3.579 4.357 0.832 34.885 -2.532 1.382 3.470 1.380 -7.231 35.157 20 AA_A33U34:A65A66_AA A 33 ? A 66 ? A 34 ? A 65 ? 1 A C 42 1_555 A G 60 1_555 A A 43 1_555 A U 59 1_555 -0.033 -1.401 3.000 -3.198 6.561 31.566 -3.525 -0.435 2.653 11.863 5.783 32.378 21 AA_C54A55:U71G72_AA A 54 ? A 72 ? A 55 ? A 71 ? 1 A A 43 1_555 A U 59 1_555 A A 44 1_555 A U 58 1_555 -0.195 -1.182 3.112 -1.289 3.476 32.370 -2.672 0.139 2.978 6.210 2.303 32.576 22 AA_A55A56:U70U71_AA A 55 ? A 71 ? A 56 ? A 70 ? 1 A A 44 1_555 A U 58 1_555 A G 45 1_555 A C 57 1_555 0.648 -1.567 3.208 1.587 2.371 29.901 -3.495 -0.936 3.107 4.582 -3.067 30.034 23 AA_A56G57:C69U70_AA A 56 ? A 70 ? A 57 ? A 69 ? 1 A G 45 1_555 A C 57 1_555 A A 46 1_555 A U 56 1_555 0.230 -1.564 3.269 0.497 1.439 31.598 -3.132 -0.330 3.200 2.641 -0.912 31.634 24 AA_G57A58:U68C69_AA A 57 ? A 69 ? A 58 ? A 68 ? 1 A A 46 1_555 A U 56 1_555 A G 47 1_555 A C 55 1_555 0.341 -1.809 3.243 1.182 0.712 33.870 -3.216 -0.397 3.215 1.222 -2.028 33.897 25 AA_A58G59:C67U68_AA A 58 ? A 68 ? A 59 ? A 67 ? 1 B G 1 1_555 B C 71 1_555 B G 2 1_555 B C 70 1_555 -0.083 -1.439 3.237 -0.932 4.397 39.422 -2.617 0.018 3.066 6.493 1.376 39.667 26 BB_G13G14:C82C83_BB B 13 ? B 83 ? B 14 ? B 82 ? 1 B G 2 1_555 B C 70 1_555 B G 3 1_555 B C 69 1_555 0.139 -1.658 3.032 0.618 4.883 31.943 -3.749 -0.152 2.757 8.807 -1.114 32.310 27 BB_G14G15:C81C82_BB B 14 ? B 82 ? B 15 ? B 81 ? 1 B G 3 1_555 B C 69 1_555 B A 4 1_555 B U 68 1_555 0.481 -1.857 3.234 2.771 11.417 31.355 -4.927 -0.424 2.459 20.256 -4.917 33.432 28 BB_G15A16:U80C81_BB B 15 ? B 81 ? B 16 ? B 80 ? 1 B A 4 1_555 B U 68 1_555 B A 5 1_555 B U 67 1_555 -0.100 -1.443 3.193 -1.594 4.073 31.306 -3.367 -0.098 2.987 7.502 2.937 31.602 29 BB_A16A17:U79U80_BB B 16 ? B 80 ? B 17 ? B 79 ? 1 B A 5 1_555 B U 67 1_555 B G 6 1_555 B C 66 1_555 0.411 -1.731 3.104 -2.534 4.416 29.279 -4.215 -1.283 2.774 8.654 4.965 29.709 30 BB_A17G18:C78U79_BB B 17 ? B 79 ? B 18 ? B 78 ? 1 B G 6 1_555 B C 66 1_555 B A 7 1_555 B U 65 1_555 0.091 -1.711 3.074 -1.842 5.214 31.989 -3.884 -0.454 2.759 9.374 3.311 32.451 31 BB_G18A19:U77C78_BB B 18 ? B 78 ? B 19 ? B 77 ? 1 B A 7 1_555 B U 65 1_555 B U 8 1_555 B A 64 1_555 -0.003 -1.596 3.270 1.445 5.703 35.665 -3.348 0.201 2.986 9.233 -2.339 36.131 32 BB_A19U20:A76U77_BB B 19 ? B 77 ? B 20 ? B 76 ? 1 B U 8 1_555 B A 64 1_555 B A 9 1_555 B U 63 1_555 0.453 -1.704 3.058 12.763 24.178 31.419 -4.490 0.458 1.508 37.083 -19.576 41.422 33 BB_U20A21:U75A76_BB B 20 ? B 76 ? B 21 ? B 75 ? 1 B A 9 1_555 B U 63 1_555 B U 35 1_555 B U 39 1_555 2.916 3.434 4.964 -30.209 -164.797 107.503 2.792 -1.658 1.712 -83.577 15.321 172.644 34 BB_A21U47:U51U75_BB B 21 ? B 75 ? B 47 ? B 51 ? 1 B U 35 1_555 B U 39 1_555 B U 10 1_555 B A 40 1_555 -0.341 0.732 -2.794 -7.575 -23.989 -3.817 -6.548 0.768 0.166 77.727 -24.544 -25.440 35 BB_U47U22:A52U51_BB B 47 ? B 51 ? B 22 ? B 52 ? 1 B U 10 1_555 B A 40 1_555 B G 34 1_555 B C 41 1_555 1.818 0.327 -3.306 4.861 -7.076 -41.238 -1.213 2.011 -3.390 9.918 6.812 -42.084 36 BB_U22G46:C53A52_BB B 22 ? B 52 ? B 46 ? B 53 ? 1 B G 34 1_555 B C 41 1_555 B A 33 1_555 B U 13 1_555 -2.581 0.283 -3.783 -16.667 -2.540 -50.798 -0.522 -1.523 -4.355 2.872 -18.843 -53.346 37 BB_G46A45:U25C53_BB B 46 ? B 53 ? B 45 ? B 25 ? 1 B A 33 1_555 B U 13 1_555 B G 32 1_555 B C 14 1_555 0.101 1.829 -3.129 -3.720 -2.221 -33.113 -3.528 0.753 -2.975 3.876 -6.492 -33.387 38 BB_A45G44:C26U25_BB B 45 ? B 25 ? B 44 ? B 26 ? 1 B G 32 1_555 B C 14 1_555 B G 31 1_555 B C 15 1_555 -0.038 1.798 -3.286 -0.036 -1.197 -32.086 -3.464 -0.062 -3.219 2.165 -0.066 -32.108 39 BB_G44G43:C27C26_BB B 44 ? B 26 ? B 43 ? B 27 ? 1 B G 31 1_555 B C 15 1_555 B G 30 1_555 B U 16 1_555 -0.044 1.889 -3.335 -0.369 -1.308 -31.868 -3.677 -0.012 -3.257 2.381 -0.672 -31.896 40 BB_G43G42:U28C27_BB B 43 ? B 27 ? B 42 ? B 28 ? 1 B G 30 1_555 B U 16 1_555 B U 29 1_555 B A 17 1_555 -0.055 1.668 -3.180 6.978 -13.007 -29.658 -4.849 -1.126 -2.208 23.655 12.691 -33.055 41 BB_G42U41:A29U28_BB B 42 ? B 28 ? B 41 ? B 29 ? 1 B U 29 1_555 B A 17 1_555 B U 28 1_555 B A 18 1_555 -0.302 2.123 -2.771 -8.684 -4.561 -19.966 -6.882 1.830 -2.178 12.246 -23.314 -22.223 42 BB_U41U40:A30A29_BB B 41 ? B 29 ? B 40 ? B 30 ? 1 B U 28 1_555 B A 18 1_555 B U 27 1_555 B U 19 1_555 0.605 1.281 -3.666 1.539 0.944 -45.907 -1.549 0.625 -3.708 -1.210 1.972 -45.941 43 BB_U40U39:U31A30_BB B 40 ? B 30 ? B 39 ? B 31 ? 1 B C 48 1_555 B G 26 1_555 B A 21 1_555 B A 54 1_555 0.436 -5.956 1.856 1.934 -4.072 -121.728 3.429 0.259 1.734 2.331 1.107 -121.778 44 BB_C60A33:A66G38_BB B 60 ? B 38 ? B 33 ? B 66 ? 1 B A 21 1_555 B A 54 1_555 B U 22 1_555 B A 53 1_555 -0.410 -1.449 3.580 4.368 0.857 34.892 -2.536 1.384 3.470 1.422 -7.249 35.166 45 BB_A33U34:A65A66_BB B 33 ? B 66 ? B 34 ? B 65 ? 1 B C 42 1_555 B G 60 1_555 B A 43 1_555 B U 59 1_555 -0.033 -1.400 3.000 -3.213 6.590 31.553 -3.529 -0.437 2.651 11.917 5.811 32.372 46 BB_C54A55:U71G72_BB B 54 ? B 72 ? B 55 ? B 71 ? 1 B A 43 1_555 B U 59 1_555 B A 44 1_555 B U 58 1_555 -0.195 -1.181 3.113 -1.280 3.448 32.373 -2.667 0.139 2.980 6.159 2.286 32.576 47 BB_A55A56:U70U71_BB B 55 ? B 71 ? B 56 ? B 70 ? 1 B A 44 1_555 B U 58 1_555 B G 45 1_555 B C 57 1_555 0.648 -1.566 3.208 1.584 2.406 29.907 -3.498 -0.936 3.104 4.649 -3.060 30.042 48 BB_A56G57:C69U70_BB B 56 ? B 70 ? B 57 ? B 69 ? 1 B G 45 1_555 B C 57 1_555 B A 46 1_555 B U 56 1_555 0.228 -1.564 3.269 0.478 1.456 31.593 -3.136 -0.331 3.199 2.672 -0.877 31.629 49 BB_G57A58:U68C69_BB B 57 ? B 69 ? B 58 ? B 68 ? 1 B A 46 1_555 B U 56 1_555 B G 47 1_555 B C 55 1_555 0.340 -1.809 3.243 1.187 0.703 33.875 -3.213 -0.394 3.216 1.205 -2.036 33.902 50 BB_A58G59:C67U68_BB B 58 ? B 68 ? B 59 ? B 67 ? # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id ADE _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id ADE _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ADENINE ADE 3 'MAGNESIUM ION' MG # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4TZX _pdbx_initial_refinement_model.details ? # _pdbx_serial_crystallography_data_reduction.diffrn_id 1 _pdbx_serial_crystallography_data_reduction.frames_total 8208739 _pdbx_serial_crystallography_data_reduction.xfel_pulse_events ? _pdbx_serial_crystallography_data_reduction.frame_hits ? _pdbx_serial_crystallography_data_reduction.crystal_hits 76905 _pdbx_serial_crystallography_data_reduction.droplet_hits ? _pdbx_serial_crystallography_data_reduction.frames_failed_index ? _pdbx_serial_crystallography_data_reduction.frames_indexed 28850 _pdbx_serial_crystallography_data_reduction.lattices_indexed ? _pdbx_serial_crystallography_data_reduction.xfel_run_numbers ? # _pdbx_serial_crystallography_measurement.diffrn_id 1 _pdbx_serial_crystallography_measurement.pulse_energy 3.2 _pdbx_serial_crystallography_measurement.pulse_duration 40 _pdbx_serial_crystallography_measurement.xfel_pulse_repetition_rate 120 _pdbx_serial_crystallography_measurement.pulse_photon_energy 9.49 _pdbx_serial_crystallography_measurement.photons_per_pulse ? _pdbx_serial_crystallography_measurement.source_size ? _pdbx_serial_crystallography_measurement.source_distance ? _pdbx_serial_crystallography_measurement.focal_spot_size 2 _pdbx_serial_crystallography_measurement.collimation ? _pdbx_serial_crystallography_measurement.collection_time_total ? # _pdbx_serial_crystallography_sample_delivery.diffrn_id 1 _pdbx_serial_crystallography_sample_delivery.description 'liquid injection' _pdbx_serial_crystallography_sample_delivery.method injection # _pdbx_serial_crystallography_sample_delivery_injection.diffrn_id 1 _pdbx_serial_crystallography_sample_delivery_injection.description GDVN _pdbx_serial_crystallography_sample_delivery_injection.injector_diameter 75 _pdbx_serial_crystallography_sample_delivery_injection.injector_temperature ? _pdbx_serial_crystallography_sample_delivery_injection.injector_pressure ? _pdbx_serial_crystallography_sample_delivery_injection.flow_rate 10 _pdbx_serial_crystallography_sample_delivery_injection.carrier_solvent ? _pdbx_serial_crystallography_sample_delivery_injection.crystal_concentration ? _pdbx_serial_crystallography_sample_delivery_injection.preparation ? _pdbx_serial_crystallography_sample_delivery_injection.power_by ? _pdbx_serial_crystallography_sample_delivery_injection.injector_nozzle 'double-flow focusing' _pdbx_serial_crystallography_sample_delivery_injection.jet_diameter ? _pdbx_serial_crystallography_sample_delivery_injection.filter_size 20 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? #