HEADER PROTEIN TRANSPORT 26-FEB-20 6VYC TITLE CRYSTAL STRUCTURE OF WD-REPEAT DOMAIN OF HUMAN WDR91 COMPND MOL_ID: 1; COMPND 2 MOLECULE: WD REPEAT-CONTAINING PROTEIN 91; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 392-747; COMPND 5 SYNONYM: WDR91; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WDR91, HSPC049; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS WDR91, WD-REPEAT, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR L.HALABELIAN,A.HUTCHINSON,Y.LI,A.SEITOVA,C.BOUNTRA,A.M.EDWARDS, AUTHOR 2 C.H.ARROWSMITH,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 11-OCT-23 6VYC 1 REMARK REVDAT 1 25-MAR-20 6VYC 0 JRNL AUTH L.HALABELIAN,A.HUTCHINSON,Y.LI,A.SEITOVA,C.BOUNTRA, JRNL AUTH 2 A.M.EDWARDS,C.H.ARROWSMITH JRNL TITL CRYSTAL STRUCTURE OF WD-REPEAT DOMAIN OF HUMAN WDR91 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 39208 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2085 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2783 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 149 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4874 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.81000 REMARK 3 B22 (A**2) : -0.83000 REMARK 3 B33 (A**2) : 2.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.245 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.061 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5014 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4460 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6834 ; 1.348 ; 1.627 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10324 ; 1.209 ; 1.567 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 665 ; 7.597 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 205 ;31.647 ;23.024 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 755 ;14.728 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;22.513 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 679 ; 0.052 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5710 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1024 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 394 730 B 394 730 9137 0.120 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 394 A 730 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7919 31.5962 17.5425 REMARK 3 T TENSOR REMARK 3 T11: 0.0098 T22: 0.0346 REMARK 3 T33: 0.0783 T12: 0.0098 REMARK 3 T13: -0.0089 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 3.1454 L22: 2.5152 REMARK 3 L33: 1.7852 L12: 0.6499 REMARK 3 L13: -0.6152 L23: -0.5230 REMARK 3 S TENSOR REMARK 3 S11: -0.0295 S12: 0.1985 S13: 0.1305 REMARK 3 S21: -0.0583 S22: 0.0359 S23: -0.2385 REMARK 3 S31: -0.0592 S32: -0.0637 S33: -0.0064 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 394 B 730 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2854 71.4905 19.7132 REMARK 3 T TENSOR REMARK 3 T11: 0.0432 T22: 0.0335 REMARK 3 T33: 0.2227 T12: -0.0172 REMARK 3 T13: -0.0535 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.8728 L22: 3.7930 REMARK 3 L33: 2.1703 L12: -0.7613 REMARK 3 L13: 0.4602 L23: -0.3027 REMARK 3 S TENSOR REMARK 3 S11: 0.1001 S12: -0.1332 S13: -0.0404 REMARK 3 S21: -0.0560 S22: 0.0295 S23: 0.5066 REMARK 3 S31: 0.0448 S32: -0.2065 S33: -0.1296 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6VYC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000247224. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41340 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 46.111 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.90600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3OW8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG20000, 0.1 M MES, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 38.50200 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.08250 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 38.50200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.08250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 374 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 465 HIS A 377 REMARK 465 HIS A 378 REMARK 465 HIS A 379 REMARK 465 HIS A 380 REMARK 465 SER A 381 REMARK 465 SER A 382 REMARK 465 GLY A 383 REMARK 465 ARG A 384 REMARK 465 GLU A 385 REMARK 465 ASN A 386 REMARK 465 LEU A 387 REMARK 465 TYR A 388 REMARK 465 PHE A 389 REMARK 465 GLN A 390 REMARK 465 GLY A 391 REMARK 465 PRO A 392 REMARK 465 GLU A 393 REMARK 465 SER A 520A REMARK 465 GLN A 520B REMARK 465 VAL A 520C REMARK 465 ASP A 520D REMARK 465 PHE A 520E REMARK 465 SER A 520F REMARK 465 ALA A 520G REMARK 465 PRO A 520H REMARK 465 ASP A 520I REMARK 465 ILE A 520J REMARK 465 GLY A 520K REMARK 465 SER A 520L REMARK 465 LYS A 520M REMARK 465 GLY A 520N REMARK 465 MET A 520O REMARK 465 ASN A 520P REMARK 465 GLY A 680 REMARK 465 GLY A 681 REMARK 465 ASP A 682 REMARK 465 LYS A 731 REMARK 465 ALA A 732 REMARK 465 MET B 374 REMARK 465 HIS B 375 REMARK 465 HIS B 376 REMARK 465 HIS B 377 REMARK 465 HIS B 378 REMARK 465 HIS B 379 REMARK 465 HIS B 380 REMARK 465 SER B 381 REMARK 465 SER B 382 REMARK 465 GLY B 383 REMARK 465 ARG B 384 REMARK 465 GLU B 385 REMARK 465 ASN B 386 REMARK 465 LEU B 387 REMARK 465 TYR B 388 REMARK 465 PHE B 389 REMARK 465 GLN B 390 REMARK 465 GLY B 391 REMARK 465 PRO B 392 REMARK 465 GLU B 393 REMARK 465 THR B 519A REMARK 465 SER B 519B REMARK 465 GLN B 519C REMARK 465 VAL B 519D REMARK 465 ASP B 519E REMARK 465 PHE B 519F REMARK 465 SER B 519G REMARK 465 ALA B 519H REMARK 465 PRO B 519I REMARK 465 ASP B 519J REMARK 465 ILE B 519K REMARK 465 GLY B 519L REMARK 465 SER B 519M REMARK 465 LYS B 519N REMARK 465 GLY B 519O REMARK 465 MET B 519P REMARK 465 ASN B 519Q REMARK 465 GLY B 680 REMARK 465 GLY B 681 REMARK 465 ASP B 682 REMARK 465 GLU B 683 REMARK 465 LYS B 684 REMARK 465 VAL B 685 REMARK 465 LEU B 686 REMARK 465 LYS B 731 REMARK 465 ALA B 732 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 394 CG CD OE1 NE2 REMARK 470 ILE A 397 CG1 CG2 CD1 REMARK 470 LYS A 450 CG CD CE NZ REMARK 470 LYS A 461 CG CD CE NZ REMARK 470 ARG A 462 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 463 CG OD1 OD2 REMARK 470 ARG A 464 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 522 CG CD OE1 NE2 REMARK 470 LYS A 533 CG CD CE NZ REMARK 470 LYS A 536 CG CD CE NZ REMARK 470 GLN A 577 CG CD OE1 NE2 REMARK 470 GLN A 578 CG CD OE1 NE2 REMARK 470 GLU A 580 CD OE1 OE2 REMARK 470 ARG A 586 CD NE CZ NH1 NH2 REMARK 470 TYR A 643 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 678 CD CE NZ REMARK 470 GLU A 687 CG CD OE1 OE2 REMARK 470 ARG A 696 NE CZ NH1 NH2 REMARK 470 ASP A 709 CG OD1 OD2 REMARK 470 LEU A 728 CG CD1 CD2 REMARK 470 HIS A 730 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 394 CG CD OE1 NE2 REMARK 470 LEU B 399 CG CD1 CD2 REMARK 470 GLU B 402 CG CD OE1 OE2 REMARK 470 ARG B 421 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 422 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 433 CG CD CE NZ REMARK 470 ILE B 440 CG1 CG2 CD1 REMARK 470 GLN B 442 CG CD OE1 NE2 REMARK 470 LYS B 444 CG CD CE NZ REMARK 470 SER B 449 OG REMARK 470 LYS B 450 CG CD CE NZ REMARK 470 LYS B 461 CG CD CE NZ REMARK 470 ARG B 464 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 483 CE NZ REMARK 470 LYS B 484 CE NZ REMARK 470 ILE B 489 CG1 CG2 CD1 REMARK 470 ASP B 493 CG OD1 OD2 REMARK 470 LEU B 519 CG CD1 CD2 REMARK 470 GLN B 522 CG CD OE1 NE2 REMARK 470 LYS B 533 CG CD CE NZ REMARK 470 LYS B 536 CG CD CE NZ REMARK 470 ASP B 544 CG OD1 OD2 REMARK 470 GLU B 546 CG CD OE1 OE2 REMARK 470 GLN B 577 CG CD OE1 NE2 REMARK 470 TYR B 643 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 678 CE NZ REMARK 470 ARG B 696 CG CD NE CZ NH1 NH2 REMARK 470 MET B 708 CG SD CE REMARK 470 ASP B 709 CG OD1 OD2 REMARK 470 CYS B 710 SG REMARK 470 LEU B 728 CG CD1 CD2 REMARK 470 HIS B 730 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 558 OD1 ASN B 560 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 421 CG - CD - NE ANGL. DEV. = 13.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 491 -62.22 -91.05 REMARK 500 GLN A 577 45.85 -104.09 REMARK 500 MET A 583 137.36 -170.96 REMARK 500 SER A 621 103.01 -47.63 REMARK 500 ARG A 653 -50.50 -132.60 REMARK 500 LEU B 543 46.95 -98.32 REMARK 500 ALA B 549 135.60 -30.00 REMARK 500 MET B 583 135.92 -173.25 REMARK 500 LYS B 620 59.68 -140.29 REMARK 500 ARG B 653 -48.51 -132.59 REMARK 500 REMARK 500 REMARK: NULL DBREF 6VYC A 392 732 UNP A4D1P6 WDR91_HUMAN 392 747 DBREF 6VYC B 392 732 UNP A4D1P6 WDR91_HUMAN 392 747 SEQADV 6VYC MET A 374 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC HIS A 375 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC HIS A 376 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC HIS A 377 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC HIS A 378 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC HIS A 379 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC HIS A 380 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC SER A 381 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC SER A 382 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC GLY A 383 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC ARG A 384 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC GLU A 385 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC ASN A 386 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC LEU A 387 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC TYR A 388 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC PHE A 389 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC GLN A 390 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC GLY A 391 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC MET B 374 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC HIS B 375 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC HIS B 376 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC HIS B 377 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC HIS B 378 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC HIS B 379 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC HIS B 380 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC SER B 381 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC SER B 382 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC GLY B 383 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC ARG B 384 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC GLU B 385 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC ASN B 386 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC LEU B 387 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC TYR B 388 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC PHE B 389 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC GLN B 390 UNP A4D1P6 EXPRESSION TAG SEQADV 6VYC GLY B 391 UNP A4D1P6 EXPRESSION TAG SEQRES 1 A 374 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 374 LEU TYR PHE GLN GLY PRO GLU GLN PRO PHE ILE VAL LEU SEQRES 3 A 374 GLY GLN GLU GLU TYR GLY GLU HIS HIS SER SER ILE MET SEQRES 4 A 374 HIS CYS ARG VAL ASP CYS SER GLY ARG ARG VAL ALA SER SEQRES 5 A 374 LEU ASP VAL ASP GLY VAL ILE LYS VAL TRP SER PHE ASN SEQRES 6 A 374 PRO ILE MET GLN THR LYS ALA SER SER ILE SER LYS SER SEQRES 7 A 374 PRO LEU LEU SER LEU GLU TRP ALA THR LYS ARG ASP ARG SEQRES 8 A 374 LEU LEU LEU LEU GLY SER GLY VAL GLY THR VAL ARG LEU SEQRES 9 A 374 TYR ASP THR GLU ALA LYS LYS ASN LEU CYS GLU ILE ASN SEQRES 10 A 374 ILE ASN ASP ASN MET PRO ARG ILE LEU SER LEU ALA CYS SEQRES 11 A 374 SER PRO ASN GLY ALA SER PHE VAL CYS SER ALA ALA ALA SEQRES 12 A 374 PRO SER LEU THR SER GLN VAL ASP PHE SER ALA PRO ASP SEQRES 13 A 374 ILE GLY SER LYS GLY MET ASN GLN VAL PRO GLY ARG LEU SEQRES 14 A 374 LEU LEU TRP ASP THR LYS THR MET LYS GLN GLN LEU GLN SEQRES 15 A 374 PHE SER LEU ASP PRO GLU PRO ILE ALA ILE ASN CYS THR SEQRES 16 A 374 ALA PHE ASN HIS ASN GLY ASN LEU LEU VAL THR GLY ALA SEQRES 17 A 374 ALA ASP GLY VAL ILE ARG LEU PHE ASP MET GLN GLN HIS SEQRES 18 A 374 GLU CYS ALA MET SER TRP ARG ALA HIS TYR GLY GLU VAL SEQRES 19 A 374 TYR SER VAL GLU PHE SER TYR ASP GLU ASN THR VAL TYR SEQRES 20 A 374 SER ILE GLY GLU ASP GLY LYS PHE ILE GLN TRP ASN ILE SEQRES 21 A 374 HIS LYS SER GLY LEU LYS VAL SER GLU TYR SER LEU PRO SEQRES 22 A 374 SER ASP ALA THR GLY PRO PHE VAL LEU SER GLY TYR SER SEQRES 23 A 374 GLY TYR LYS GLN VAL GLN VAL PRO ARG GLY ARG LEU PHE SEQRES 24 A 374 ALA PHE ASP SER GLU GLY ASN TYR MET LEU THR CYS SER SEQRES 25 A 374 ALA THR GLY GLY VAL ILE TYR LYS LEU GLY GLY ASP GLU SEQRES 26 A 374 LYS VAL LEU GLU SER CYS LEU SER LEU GLY GLY HIS ARG SEQRES 27 A 374 ALA PRO VAL VAL THR VAL ASP TRP SER THR ALA MET ASP SEQRES 28 A 374 CYS GLY THR CYS LEU THR ALA SER MET ASP GLY LYS ILE SEQRES 29 A 374 LYS LEU THR THR LEU LEU ALA HIS LYS ALA SEQRES 1 B 374 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 B 374 LEU TYR PHE GLN GLY PRO GLU GLN PRO PHE ILE VAL LEU SEQRES 3 B 374 GLY GLN GLU GLU TYR GLY GLU HIS HIS SER SER ILE MET SEQRES 4 B 374 HIS CYS ARG VAL ASP CYS SER GLY ARG ARG VAL ALA SER SEQRES 5 B 374 LEU ASP VAL ASP GLY VAL ILE LYS VAL TRP SER PHE ASN SEQRES 6 B 374 PRO ILE MET GLN THR LYS ALA SER SER ILE SER LYS SER SEQRES 7 B 374 PRO LEU LEU SER LEU GLU TRP ALA THR LYS ARG ASP ARG SEQRES 8 B 374 LEU LEU LEU LEU GLY SER GLY VAL GLY THR VAL ARG LEU SEQRES 9 B 374 TYR ASP THR GLU ALA LYS LYS ASN LEU CYS GLU ILE ASN SEQRES 10 B 374 ILE ASN ASP ASN MET PRO ARG ILE LEU SER LEU ALA CYS SEQRES 11 B 374 SER PRO ASN GLY ALA SER PHE VAL CYS SER ALA ALA ALA SEQRES 12 B 374 PRO SER LEU THR SER GLN VAL ASP PHE SER ALA PRO ASP SEQRES 13 B 374 ILE GLY SER LYS GLY MET ASN GLN VAL PRO GLY ARG LEU SEQRES 14 B 374 LEU LEU TRP ASP THR LYS THR MET LYS GLN GLN LEU GLN SEQRES 15 B 374 PHE SER LEU ASP PRO GLU PRO ILE ALA ILE ASN CYS THR SEQRES 16 B 374 ALA PHE ASN HIS ASN GLY ASN LEU LEU VAL THR GLY ALA SEQRES 17 B 374 ALA ASP GLY VAL ILE ARG LEU PHE ASP MET GLN GLN HIS SEQRES 18 B 374 GLU CYS ALA MET SER TRP ARG ALA HIS TYR GLY GLU VAL SEQRES 19 B 374 TYR SER VAL GLU PHE SER TYR ASP GLU ASN THR VAL TYR SEQRES 20 B 374 SER ILE GLY GLU ASP GLY LYS PHE ILE GLN TRP ASN ILE SEQRES 21 B 374 HIS LYS SER GLY LEU LYS VAL SER GLU TYR SER LEU PRO SEQRES 22 B 374 SER ASP ALA THR GLY PRO PHE VAL LEU SER GLY TYR SER SEQRES 23 B 374 GLY TYR LYS GLN VAL GLN VAL PRO ARG GLY ARG LEU PHE SEQRES 24 B 374 ALA PHE ASP SER GLU GLY ASN TYR MET LEU THR CYS SER SEQRES 25 B 374 ALA THR GLY GLY VAL ILE TYR LYS LEU GLY GLY ASP GLU SEQRES 26 B 374 LYS VAL LEU GLU SER CYS LEU SER LEU GLY GLY HIS ARG SEQRES 27 B 374 ALA PRO VAL VAL THR VAL ASP TRP SER THR ALA MET ASP SEQRES 28 B 374 CYS GLY THR CYS LEU THR ALA SER MET ASP GLY LYS ILE SEQRES 29 B 374 LYS LEU THR THR LEU LEU ALA HIS LYS ALA HET UNX A 801 1 HET UNX A 802 1 HET UNX A 803 1 HET UNX B 801 1 HETNAM UNX UNKNOWN ATOM OR ION FORMUL 3 UNX 4(X) FORMUL 7 HOH *127(H2 O) HELIX 1 AA1 PRO A 631 THR A 635 5 5 HELIX 2 AA2 PRO B 631 THR B 635 5 5 SHEET 1 AA1 4 PHE A 396 TYR A 404 0 SHEET 2 AA1 4 ILE A 722 ALA A 729 -1 O LEU A 728 N ILE A 397 SHEET 3 AA1 4 GLY A 711 SER A 717 -1 N THR A 715 O LYS A 723 SHEET 4 AA1 4 VAL A 699 THR A 706 -1 N ASP A 703 O LEU A 714 SHEET 1 AA2 4 ILE A 411 VAL A 416 0 SHEET 2 AA2 4 ARG A 422 ASP A 427 -1 O LEU A 426 N MET A 412 SHEET 3 AA2 4 VAL A 431 SER A 436 -1 O TRP A 435 N VAL A 423 SHEET 4 AA2 4 GLN A 442 ILE A 448 -1 O LYS A 444 N VAL A 434 SHEET 1 AA3 4 LEU A 453 TRP A 458 0 SHEET 2 AA3 4 LEU A 465 SER A 470 -1 O LEU A 467 N GLU A 457 SHEET 3 AA3 4 THR A 474 ASP A 479 -1 O ARG A 476 N LEU A 468 SHEET 4 AA3 4 LYS A 484 ASN A 490 -1 O ILE A 489 N VAL A 475 SHEET 1 AA4 4 ARG A 497 CYS A 503 0 SHEET 2 AA4 4 SER A 509 ALA A 515 -1 O VAL A 511 N ALA A 502 SHEET 3 AA4 4 GLY A 525 ASP A 531 -1 O TRP A 530 N PHE A 510 SHEET 4 AA4 4 LYS A 536 GLN A 540 -1 O GLN A 538 N LEU A 529 SHEET 1 AA5 4 ILE A 550 PHE A 555 0 SHEET 2 AA5 4 LEU A 561 ALA A 566 -1 O VAL A 563 N ALA A 554 SHEET 3 AA5 4 VAL A 570 ASP A 575 -1 O PHE A 574 N LEU A 562 SHEET 4 AA5 4 MET A 583 ARG A 586 -1 O MET A 583 N LEU A 573 SHEET 1 AA6 4 VAL A 592 PHE A 597 0 SHEET 2 AA6 4 THR A 603 GLY A 608 -1 O TYR A 605 N GLU A 596 SHEET 3 AA6 4 LYS A 612 ASN A 617 -1 O TRP A 616 N VAL A 604 SHEET 4 AA6 4 LYS A 624 SER A 629 -1 O TYR A 628 N PHE A 613 SHEET 1 AA7 2 PHE A 638 SER A 641 0 SHEET 2 AA7 2 LYS A 647 GLN A 650 -1 O GLN A 648 N LEU A 640 SHEET 1 AA8 4 PHE A 657 PHE A 659 0 SHEET 2 AA8 4 TYR A 665 THR A 668 -1 O LEU A 667 N ALA A 658 SHEET 3 AA8 4 VAL A 675 LYS A 678 -1 O TYR A 677 N MET A 666 SHEET 4 AA8 4 SER A 688 SER A 691 -1 O LEU A 690 N ILE A 676 SHEET 1 AA9 4 PHE B 396 TYR B 404 0 SHEET 2 AA9 4 ILE B 722 ALA B 729 -1 O LEU B 728 N ILE B 397 SHEET 3 AA9 4 CYS B 710 SER B 717 -1 N THR B 715 O LYS B 723 SHEET 4 AA9 4 VAL B 699 SER B 705 -1 N SER B 705 O THR B 712 SHEET 1 AB1 4 ILE B 411 VAL B 416 0 SHEET 2 AB1 4 ARG B 422 ASP B 427 -1 O LEU B 426 N MET B 412 SHEET 3 AB1 4 VAL B 431 SER B 436 -1 O TRP B 435 N VAL B 423 SHEET 4 AB1 4 GLN B 442 ILE B 448 -1 O LYS B 444 N VAL B 434 SHEET 1 AB2 4 LEU B 453 TRP B 458 0 SHEET 2 AB2 4 LEU B 465 SER B 470 -1 O LEU B 467 N GLU B 457 SHEET 3 AB2 4 THR B 474 ASP B 479 -1 O TYR B 478 N LEU B 466 SHEET 4 AB2 4 LYS B 484 ASN B 490 -1 O LEU B 486 N LEU B 477 SHEET 1 AB3 4 ARG B 497 CYS B 503 0 SHEET 2 AB3 4 SER B 509 ALA B 515 -1 O VAL B 511 N ALA B 502 SHEET 3 AB3 4 GLY B 525 ASP B 531 -1 O TRP B 530 N PHE B 510 SHEET 4 AB3 4 LYS B 536 PHE B 541 -1 O GLN B 538 N LEU B 529 SHEET 1 AB4 4 ILE B 550 PHE B 555 0 SHEET 2 AB4 4 LEU B 561 ALA B 566 -1 O VAL B 563 N ALA B 554 SHEET 3 AB4 4 VAL B 570 ASP B 575 -1 O PHE B 574 N LEU B 562 SHEET 4 AB4 4 GLU B 580 ARG B 586 -1 O MET B 583 N LEU B 573 SHEET 1 AB5 4 VAL B 592 PHE B 597 0 SHEET 2 AB5 4 THR B 603 GLY B 608 -1 O TYR B 605 N GLU B 596 SHEET 3 AB5 4 LYS B 612 ASN B 617 -1 O TRP B 616 N VAL B 604 SHEET 4 AB5 4 LYS B 624 SER B 629 -1 O TYR B 628 N PHE B 613 SHEET 1 AB6 2 PHE B 638 GLY B 642 0 SHEET 2 AB6 2 TYR B 646 GLN B 650 -1 O GLN B 650 N PHE B 638 SHEET 1 AB7 4 PHE B 657 PHE B 659 0 SHEET 2 AB7 4 TYR B 665 THR B 668 -1 O LEU B 667 N ALA B 658 SHEET 3 AB7 4 VAL B 675 LYS B 678 -1 O TYR B 677 N MET B 666 SHEET 4 AB7 4 SER B 688 SER B 691 -1 O LEU B 690 N ILE B 676 CISPEP 1 ASN A 438 PRO A 439 0 9.92 CISPEP 2 ASP A 544 PRO A 545 0 2.55 CISPEP 3 GLY A 636 PRO A 637 0 2.67 CISPEP 4 ASN B 438 PRO B 439 0 6.48 CISPEP 5 ASP B 544 PRO B 545 0 -18.13 CISPEP 6 GLY B 636 PRO B 637 0 4.72 CRYST1 77.004 84.047 110.165 90.00 90.00 90.00 P 21 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012986 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011898 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009077 0.00000