data_6VZX # _entry.id 6VZX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6VZX pdb_00006vzx 10.2210/pdb6vzx/pdb WWPDB D_1000247387 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'KGE collagen mimetic peptide without covalent capture' 3t4f unspecified PDB 'KGD collagen mimetic peptide without covalent capture' 3u29 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6VZX _pdbx_database_status.recvd_initial_deposition_date 2020-02-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Miller, M.D.' 1 0000-0003-1626-4943 'Hulgan, S.A.' 2 ? 'Xu, W.' 3 0000-0002-0553-9908 'Kosgei, A.J.' 4 0000-0003-2974-177X 'Phillips Jr., G.N.' 5 0000-0002-4171-4603 'Hartgerink, J.D.' 6 0000-0002-3186-5395 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biomacromolecules _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1526-4602 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 21 _citation.language ? _citation.page_first 3772 _citation.page_last 3781 _citation.title 'Covalent Capture of Collagen Triple Helices Using Lysine-Aspartate and Lysine-Glutamate Pairs.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.biomac.0c00878 _citation.pdbx_database_id_PubMed 32820897 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hulgan, S.A.H.' 1 ? primary 'Jalan, A.A.' 2 ? primary 'Li, I.C.' 3 ? primary 'Walker, D.R.' 4 ? primary 'Miller, M.D.' 5 ? primary 'Kosgei, A.J.' 6 ? primary 'Xu, W.' 7 ? primary 'Phillips Jr., G.N.' 8 ? primary 'Hartgerink, J.D.' 9 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.350 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6VZX _cell.details ? _cell.formula_units_Z ? _cell.length_a 134.835 _cell.length_a_esd ? _cell.length_b 14.113 _cell.length_b_esd ? _cell.length_c 24.568 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VZX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'collagen mimetic peptide' 2228.375 3 ? ? ? ? 2 water nat water 18.015 136 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)P(HYP)GP(HYP)GP(HYP)GPKGE(HYP)GP(HYP)GP(HYP)GP(HYP)G(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XPPGPPGPPGPKGEPGPPGPPGPPGX _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 PRO n 1 3 HYP n 1 4 GLY n 1 5 PRO n 1 6 HYP n 1 7 GLY n 1 8 PRO n 1 9 HYP n 1 10 GLY n 1 11 PRO n 1 12 LYS n 1 13 GLY n 1 14 GLU n 1 15 HYP n 1 16 GLY n 1 17 PRO n 1 18 HYP n 1 19 GLY n 1 20 PRO n 1 21 HYP n 1 22 GLY n 1 23 PRO n 1 24 HYP n 1 25 GLY n 1 26 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 26 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details 'Fmoc Solid Phase Peptide Chemistry with N-Terminal Acetylation and C-Terminal Amidation' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6VZX _struct_ref.pdbx_db_accession 6VZX _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6VZX A 1 ? 26 ? 6VZX 0 ? 25 ? 0 25 2 1 6VZX B 1 ? 26 ? 6VZX 0 ? 25 ? 0 25 3 1 6VZX C 1 ? 26 ? 6VZX 0 ? 25 ? 0 25 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 HYP 'L-peptide linking' n 4-HYDROXYPROLINE HYDROXYPROLINE 'C5 H9 N O3' 131.130 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6VZX _exptl.crystals_number 2 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.74 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 29.11 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '3.5 M sodium formate, 0.1 M BIS-TRIS, pH 7.0' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details 'Adjustable focus K-B pair' _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-10-27 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Double crystal cryo-cooled Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.033 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.033 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 23-ID-B _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6VZX _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.370 _reflns.d_resolution_low 33.710 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9559 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 93.500 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 11.200 _reflns.pdbx_Rmerge_I_obs 0.149 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.700 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects 96 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.157 _reflns.pdbx_Rpim_I_all 0.046 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 107201 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 1.370 1.410 ? ? 3090 ? ? ? 450 59.500 ? ? ? ? 1.014 ? ? ? ? ? ? ? ? 6.900 ? ? ? 1.700 1.096 0.406 ? 1 1 0.727 ? ? 6.120 33.710 ? ? 1536 ? ? ? 138 99.100 ? ? ? ? 0.076 ? ? ? ? ? ? ? ? 11.100 ? ? ? 16.100 0.081 0.026 ? 2 1 0.998 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 63.210 _refine.B_iso_mean 14.0822 _refine.B_iso_min 3.030 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6VZX _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.3700 _refine.ls_d_res_low 33.7100 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9539 _refine.ls_number_reflns_R_free 463 _refine.ls_number_reflns_R_work 9076 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 93.3700 _refine.ls_percent_reflns_R_free 4.8500 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1582 _refine.ls_R_factor_R_free 0.1774 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1571 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 3t4f _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 23.1500 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1500 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.3700 _refine_hist.d_res_low 33.7100 _refine_hist.number_atoms_solvent 145 _refine_hist.number_atoms_total 619 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 72 _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent 21.29 _refine_hist.pdbx_number_atoms_protein 474 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.013 ? ? 531 'X-RAY DIFFRACTION' ? f_angle_d 1.661 ? ? 747 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 11.557 ? ? 280 'X-RAY DIFFRACTION' ? f_chiral_restr 0.052 ? ? 71 'X-RAY DIFFRACTION' ? f_plane_restr 0.008 ? ? 105 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.3700 1.5700 2702 . 124 2578 80.0000 . . . 0.2454 0.0000 0.2174 . . . . . . . 3 . . . 'X-RAY DIFFRACTION' 1.5700 1.9800 3341 . 163 3178 100.0000 . . . 0.2124 0.0000 0.1820 . . . . . . . 3 . . . 'X-RAY DIFFRACTION' 1.9800 33.7100 3496 . 176 3320 100.0000 . . . 0.1513 0.0000 0.1340 . . . . . . . 3 . . . # _struct.entry_id 6VZX _struct.title 'Structure of a Covalently Captured Collagen Triple Helix using Lysine-Glutamate Pairs' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6VZX _struct_keywords.text 'collagen mimetic peptide, Triple Helix, isopeptide bond, BIOSYNTHETIC PROTEIN' _struct_keywords.pdbx_keywords 'BIOSYNTHETIC PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A PRO 2 N ? ? A ACE 0 A PRO 1 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale2 covale both ? A PRO 2 C ? ? ? 1_555 A HYP 3 N ? ? A PRO 1 A HYP 2 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale both ? A HYP 3 C ? ? ? 1_555 A GLY 4 N ? ? A HYP 2 A GLY 3 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale4 covale both ? A PRO 5 C ? ? ? 1_555 A HYP 6 N ? ? A PRO 4 A HYP 5 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale5 covale both ? A HYP 6 C ? ? ? 1_555 A GLY 7 N ? ? A HYP 5 A GLY 6 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale6 covale both ? A PRO 8 C ? ? ? 1_555 A HYP 9 N ? ? A PRO 7 A HYP 8 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale7 covale both ? A HYP 9 C ? ? ? 1_555 A GLY 10 N ? ? A HYP 8 A GLY 9 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale8 covale none ? A LYS 12 NZ ? ? ? 1_555 B GLU 14 CD ? ? A LYS 11 B GLU 13 1_555 ? ? ? ? ? ? ? 1.328 sing ? covale9 covale both ? A GLU 14 C ? ? ? 1_555 A HYP 15 N ? ? A GLU 13 A HYP 14 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale10 covale none ? A GLU 14 CD ? ? ? 1_555 C LYS 12 NZ ? ? A GLU 13 C LYS 11 1_555 ? ? ? ? ? ? ? 1.333 sing ? covale11 covale both ? A HYP 15 C ? ? ? 1_555 A GLY 16 N ? ? A HYP 14 A GLY 15 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale12 covale both ? A PRO 17 C ? ? ? 1_555 A HYP 18 N ? ? A PRO 16 A HYP 17 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale13 covale both ? A HYP 18 C ? ? ? 1_555 A GLY 19 N ? ? A HYP 17 A GLY 18 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale14 covale both ? A PRO 20 C A ? ? 1_555 A HYP 21 N ? ? A PRO 19 A HYP 20 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale15 covale both ? A PRO 20 C B ? ? 1_555 A HYP 21 N ? ? A PRO 19 A HYP 20 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale16 covale both ? A HYP 21 C ? ? ? 1_555 A GLY 22 N ? ? A HYP 20 A GLY 21 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale17 covale both ? A PRO 23 C ? ? ? 1_555 A HYP 24 N ? ? A PRO 22 A HYP 23 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale18 covale both ? A HYP 24 C ? ? ? 1_555 A GLY 25 N ? ? A HYP 23 A GLY 24 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale19 covale both ? A GLY 25 C ? ? ? 1_555 A NH2 26 N ? ? A GLY 24 A NH2 25 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale20 covale both ? B ACE 1 C ? ? ? 1_555 B PRO 2 N ? ? B ACE 0 B PRO 1 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale21 covale both ? B PRO 2 C ? ? ? 1_555 B HYP 3 N ? ? B PRO 1 B HYP 2 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale22 covale both ? B HYP 3 C ? ? ? 1_555 B GLY 4 N ? ? B HYP 2 B GLY 3 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale23 covale both ? B PRO 5 C ? ? ? 1_555 B HYP 6 N ? ? B PRO 4 B HYP 5 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale24 covale both ? B HYP 6 C ? ? ? 1_555 B GLY 7 N ? ? B HYP 5 B GLY 6 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale25 covale both ? B PRO 8 C ? ? ? 1_555 B HYP 9 N ? ? B PRO 7 B HYP 8 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale26 covale both ? B HYP 9 C ? ? ? 1_555 B GLY 10 N ? ? B HYP 8 B GLY 9 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale27 covale none ? B LYS 12 NZ ? ? ? 1_555 C GLU 14 CD ? ? B LYS 11 C GLU 13 1_555 ? ? ? ? ? ? ? 1.332 sing ? covale28 covale both ? B GLU 14 C ? ? ? 1_555 B HYP 15 N ? ? B GLU 13 B HYP 14 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale29 covale both ? B HYP 15 C ? ? ? 1_555 B GLY 16 N ? ? B HYP 14 B GLY 15 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale30 covale both ? B PRO 17 C ? ? ? 1_555 B HYP 18 N ? ? B PRO 16 B HYP 17 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale31 covale both ? B HYP 18 C ? ? ? 1_555 B GLY 19 N ? ? B HYP 17 B GLY 18 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale32 covale both ? B PRO 20 C ? ? ? 1_555 B HYP 21 N ? ? B PRO 19 B HYP 20 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale33 covale both ? B HYP 21 C ? ? ? 1_555 B GLY 22 N ? ? B HYP 20 B GLY 21 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale34 covale both ? B PRO 23 C ? ? ? 1_555 B HYP 24 N ? ? B PRO 22 B HYP 23 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale35 covale both ? B HYP 24 C ? ? ? 1_555 B GLY 25 N ? ? B HYP 23 B GLY 24 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale36 covale both ? B GLY 25 C ? ? ? 1_555 B NH2 26 N ? ? B GLY 24 B NH2 25 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale37 covale both ? C ACE 1 C ? ? ? 1_555 C PRO 2 N ? ? C ACE 0 C PRO 1 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale38 covale both ? C PRO 2 C ? ? ? 1_555 C HYP 3 N ? ? C PRO 1 C HYP 2 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale39 covale both ? C HYP 3 C ? ? ? 1_555 C GLY 4 N ? ? C HYP 2 C GLY 3 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale40 covale both ? C PRO 5 C A ? ? 1_555 C HYP 6 N ? ? C PRO 4 C HYP 5 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale41 covale both ? C PRO 5 C B ? ? 1_555 C HYP 6 N ? ? C PRO 4 C HYP 5 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale42 covale both ? C HYP 6 C ? ? ? 1_555 C GLY 7 N ? ? C HYP 5 C GLY 6 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale43 covale both ? C PRO 8 C ? ? ? 1_555 C HYP 9 N ? ? C PRO 7 C HYP 8 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale44 covale both ? C HYP 9 C ? ? ? 1_555 C GLY 10 N ? ? C HYP 8 C GLY 9 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale45 covale both ? C GLU 14 C ? ? ? 1_555 C HYP 15 N ? ? C GLU 13 C HYP 14 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale46 covale both ? C HYP 15 C ? ? ? 1_555 C GLY 16 N ? ? C HYP 14 C GLY 15 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale47 covale both ? C PRO 17 C ? ? ? 1_555 C HYP 18 N ? ? C PRO 16 C HYP 17 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale48 covale both ? C HYP 18 C ? ? ? 1_555 C GLY 19 N ? ? C HYP 17 C GLY 18 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale49 covale both ? C PRO 20 C ? ? ? 1_555 C HYP 21 N ? ? C PRO 19 C HYP 20 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale50 covale both ? C HYP 21 C ? ? ? 1_555 C GLY 22 N ? ? C HYP 20 C GLY 21 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale51 covale both ? C PRO 23 C ? ? ? 1_555 C HYP 24 N ? ? C PRO 22 C HYP 23 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale52 covale both ? C HYP 24 C ? ? ? 1_555 C GLY 25 N ? ? C HYP 23 C GLY 24 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale53 covale both ? C GLY 25 C ? ? ? 1_555 C NH2 26 N ? ? C GLY 24 C NH2 25 1_555 ? ? ? ? ? ? ? 1.326 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 6VZX _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.007416 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000045 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.070857 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.040704 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 1 ACE N7P A . n A 1 2 PRO 2 1 1 PRO N7P A . n A 1 3 HYP 3 2 2 HYP HYP A . n A 1 4 GLY 4 3 3 GLY GLY A . n A 1 5 PRO 5 4 4 PRO PRO A . n A 1 6 HYP 6 5 5 HYP HYP A . n A 1 7 GLY 7 6 6 GLY GLY A . n A 1 8 PRO 8 7 7 PRO PRO A . n A 1 9 HYP 9 8 8 HYP HYP A . n A 1 10 GLY 10 9 9 GLY GLY A . n A 1 11 PRO 11 10 10 PRO PRO A . n A 1 12 LYS 12 11 11 LYS LYS A . n A 1 13 GLY 13 12 12 GLY GLY A . n A 1 14 GLU 14 13 13 GLU GLU A . n A 1 15 HYP 15 14 14 HYP HYP A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 PRO 17 16 16 PRO PRO A . n A 1 18 HYP 18 17 17 HYP HYP A . n A 1 19 GLY 19 18 18 GLY GLY A . n A 1 20 PRO 20 19 19 PRO PRO A . n A 1 21 HYP 21 20 20 HYP HYP A . n A 1 22 GLY 22 21 21 GLY GLY A . n A 1 23 PRO 23 22 22 PRO PRO A . n A 1 24 HYP 24 23 23 HYP HYP A . n A 1 25 GLY 25 24 24 GLY GM1 A . n A 1 26 NH2 26 25 24 NH2 GM1 A . n B 1 1 ACE 1 0 1 ACE N7P B . n B 1 2 PRO 2 1 1 PRO N7P B . n B 1 3 HYP 3 2 2 HYP HYP B . n B 1 4 GLY 4 3 3 GLY GLY B . n B 1 5 PRO 5 4 4 PRO PRO B . n B 1 6 HYP 6 5 5 HYP HYP B . n B 1 7 GLY 7 6 6 GLY GLY B . n B 1 8 PRO 8 7 7 PRO PRO B . n B 1 9 HYP 9 8 8 HYP HYP B . n B 1 10 GLY 10 9 9 GLY GLY B . n B 1 11 PRO 11 10 10 PRO PRO B . n B 1 12 LYS 12 11 11 LYS LYS B . n B 1 13 GLY 13 12 12 GLY GLY B . n B 1 14 GLU 14 13 13 GLU GLU B . n B 1 15 HYP 15 14 14 HYP HYP B . n B 1 16 GLY 16 15 15 GLY GLY B . n B 1 17 PRO 17 16 16 PRO PRO B . n B 1 18 HYP 18 17 17 HYP HYP B . n B 1 19 GLY 19 18 18 GLY GLY B . n B 1 20 PRO 20 19 19 PRO PRO B . n B 1 21 HYP 21 20 20 HYP HYP B . n B 1 22 GLY 22 21 21 GLY GLY B . n B 1 23 PRO 23 22 22 PRO PRO B . n B 1 24 HYP 24 23 23 HYP HYP B . n B 1 25 GLY 25 24 24 GLY GM1 B . n B 1 26 NH2 26 25 24 NH2 GM1 B . n C 1 1 ACE 1 0 1 ACE N7P C . n C 1 2 PRO 2 1 1 PRO N7P C . n C 1 3 HYP 3 2 2 HYP HYP C . n C 1 4 GLY 4 3 3 GLY GLY C . n C 1 5 PRO 5 4 4 PRO PRO C . n C 1 6 HYP 6 5 5 HYP HYP C . n C 1 7 GLY 7 6 6 GLY GLY C . n C 1 8 PRO 8 7 7 PRO PRO C . n C 1 9 HYP 9 8 8 HYP HYP C . n C 1 10 GLY 10 9 9 GLY GLY C . n C 1 11 PRO 11 10 10 PRO PRO C . n C 1 12 LYS 12 11 11 LYS LYS C . n C 1 13 GLY 13 12 12 GLY GLY C . n C 1 14 GLU 14 13 13 GLU GLU C . n C 1 15 HYP 15 14 14 HYP HYP C . n C 1 16 GLY 16 15 15 GLY GLY C . n C 1 17 PRO 17 16 16 PRO PRO C . n C 1 18 HYP 18 17 17 HYP HYP C . n C 1 19 GLY 19 18 18 GLY GLY C . n C 1 20 PRO 20 19 19 PRO PRO C . n C 1 21 HYP 21 20 20 HYP HYP C . n C 1 22 GLY 22 21 21 GLY GLY C . n C 1 23 PRO 23 22 22 PRO PRO C . n C 1 24 HYP 24 23 23 HYP HYP C . n C 1 25 GLY 25 24 24 GLY GM1 C . n C 1 26 NH2 26 25 24 NH2 GM1 C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HOH 1 101 186 HOH HOH A . D 2 HOH 2 102 221 HOH HOH A . D 2 HOH 3 103 195 HOH HOH A . D 2 HOH 4 104 158 HOH HOH A . D 2 HOH 5 105 216 HOH HOH A . D 2 HOH 6 106 220 HOH HOH A . D 2 HOH 7 107 228 HOH HOH A . D 2 HOH 8 108 232 HOH HOH A . D 2 HOH 9 109 191 HOH HOH A . D 2 HOH 10 110 197 HOH HOH A . D 2 HOH 11 111 150 HOH HOH A . D 2 HOH 12 112 113 HOH HOH A . D 2 HOH 13 113 199 HOH HOH A . D 2 HOH 14 114 165 HOH HOH A . D 2 HOH 15 115 112 HOH HOH A . D 2 HOH 16 116 196 HOH HOH A . D 2 HOH 17 117 102 HOH HOH A . D 2 HOH 18 118 169 HOH HOH A . D 2 HOH 19 119 163 HOH HOH A . D 2 HOH 20 120 138 HOH HOH A . D 2 HOH 21 121 177 HOH HOH A . D 2 HOH 22 122 111 HOH HOH A . D 2 HOH 23 123 119 HOH HOH A . D 2 HOH 24 124 126 HOH HOH A . D 2 HOH 25 125 226 HOH HOH A . D 2 HOH 26 126 206 HOH HOH A . D 2 HOH 27 127 173 HOH HOH A . D 2 HOH 28 128 174 HOH HOH A . D 2 HOH 29 129 166 HOH HOH A . D 2 HOH 30 130 171 HOH HOH A . D 2 HOH 31 131 185 HOH HOH A . D 2 HOH 32 132 218 HOH HOH A . D 2 HOH 33 133 192 HOH HOH A . D 2 HOH 34 134 132 HOH HOH A . D 2 HOH 35 135 154 HOH HOH A . D 2 HOH 36 136 190 HOH HOH A . D 2 HOH 37 137 124 HOH HOH A . D 2 HOH 38 138 182 HOH HOH A . D 2 HOH 39 139 202 HOH HOH A . D 2 HOH 40 140 194 HOH HOH A . D 2 HOH 41 141 208 HOH HOH A . D 2 HOH 42 142 129 HOH HOH A . D 2 HOH 43 143 143 HOH HOH A . D 2 HOH 44 144 212 HOH HOH A . D 2 HOH 45 145 161 HOH HOH A . D 2 HOH 46 146 236 HOH HOH A . E 2 HOH 1 101 187 HOH HOH B . E 2 HOH 2 102 142 HOH HOH B . E 2 HOH 3 103 184 HOH HOH B . E 2 HOH 4 104 227 HOH HOH B . E 2 HOH 5 105 155 HOH HOH B . E 2 HOH 6 106 183 HOH HOH B . E 2 HOH 7 107 170 HOH HOH B . E 2 HOH 8 108 164 HOH HOH B . E 2 HOH 9 109 193 HOH HOH B . E 2 HOH 10 110 162 HOH HOH B . E 2 HOH 11 111 118 HOH HOH B . E 2 HOH 12 112 175 HOH HOH B . E 2 HOH 13 113 107 HOH HOH B . E 2 HOH 14 114 104 HOH HOH B . E 2 HOH 15 115 139 HOH HOH B . E 2 HOH 16 116 103 HOH HOH B . E 2 HOH 17 117 141 HOH HOH B . E 2 HOH 18 118 224 HOH HOH B . E 2 HOH 19 119 188 HOH HOH B . E 2 HOH 20 120 148 HOH HOH B . E 2 HOH 21 121 152 HOH HOH B . E 2 HOH 22 122 133 HOH HOH B . E 2 HOH 23 123 222 HOH HOH B . E 2 HOH 24 124 168 HOH HOH B . E 2 HOH 25 125 203 HOH HOH B . E 2 HOH 26 126 131 HOH HOH B . E 2 HOH 27 127 160 HOH HOH B . E 2 HOH 28 128 214 HOH HOH B . E 2 HOH 29 129 213 HOH HOH B . E 2 HOH 30 130 121 HOH HOH B . E 2 HOH 31 131 176 HOH HOH B . E 2 HOH 32 132 229 HOH HOH B . E 2 HOH 33 133 235 HOH HOH B . E 2 HOH 34 134 234 HOH HOH B . E 2 HOH 35 135 200 HOH HOH B . E 2 HOH 36 136 157 HOH HOH B . E 2 HOH 37 137 144 HOH HOH B . E 2 HOH 38 138 201 HOH HOH B . E 2 HOH 39 139 204 HOH HOH B . E 2 HOH 40 140 223 HOH HOH B . E 2 HOH 41 141 146 HOH HOH B . E 2 HOH 42 142 189 HOH HOH B . E 2 HOH 43 143 153 HOH HOH B . E 2 HOH 44 144 123 HOH HOH B . E 2 HOH 45 145 217 HOH HOH B . E 2 HOH 46 146 205 HOH HOH B . E 2 HOH 47 147 219 HOH HOH B . F 2 HOH 1 101 209 HOH HOH C . F 2 HOH 2 102 181 HOH HOH C . F 2 HOH 3 103 198 HOH HOH C . F 2 HOH 4 104 136 HOH HOH C . F 2 HOH 5 105 125 HOH HOH C . F 2 HOH 6 106 108 HOH HOH C . F 2 HOH 7 107 127 HOH HOH C . F 2 HOH 8 108 215 HOH HOH C . F 2 HOH 9 109 109 HOH HOH C . F 2 HOH 10 110 178 HOH HOH C . F 2 HOH 11 111 128 HOH HOH C . F 2 HOH 12 112 116 HOH HOH C . F 2 HOH 13 113 180 HOH HOH C . F 2 HOH 14 114 210 HOH HOH C . F 2 HOH 15 115 122 HOH HOH C . F 2 HOH 16 116 105 HOH HOH C . F 2 HOH 17 117 145 HOH HOH C . F 2 HOH 18 118 167 HOH HOH C . F 2 HOH 19 119 159 HOH HOH C . F 2 HOH 20 120 147 HOH HOH C . F 2 HOH 21 121 151 HOH HOH C . F 2 HOH 22 122 230 HOH HOH C . F 2 HOH 23 123 140 HOH HOH C . F 2 HOH 24 124 120 HOH HOH C . F 2 HOH 25 125 135 HOH HOH C . F 2 HOH 26 126 172 HOH HOH C . F 2 HOH 27 127 114 HOH HOH C . F 2 HOH 28 128 110 HOH HOH C . F 2 HOH 29 129 149 HOH HOH C . F 2 HOH 30 130 231 HOH HOH C . F 2 HOH 31 131 106 HOH HOH C . F 2 HOH 32 132 117 HOH HOH C . F 2 HOH 33 133 179 HOH HOH C . F 2 HOH 34 134 156 HOH HOH C . F 2 HOH 35 135 233 HOH HOH C . F 2 HOH 36 136 207 HOH HOH C . F 2 HOH 37 137 115 HOH HOH C . F 2 HOH 38 138 225 HOH HOH C . F 2 HOH 39 139 130 HOH HOH C . F 2 HOH 40 140 211 HOH HOH C . F 2 HOH 41 141 137 HOH HOH C . F 2 HOH 42 142 134 HOH HOH C . F 2 HOH 43 143 101 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4900 ? 1 MORE -21 ? 1 'SSA (A^2)' 4310 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 140 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-09-02 2 'Structure model' 1 1 2020-09-30 3 'Structure model' 1 2 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 3 'Structure model' '_database_2.pdbx_DOI' 6 3 'Structure model' '_database_2.pdbx_database_accession' # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? 'Graeme Winter' xia2.support@gmail.com ? ? ? ? ? ? ? xia2 ? ? package 0.5.893-gb176367e-dials-1.14 1 ? 'data reduction' ? ? 'DIALS Team' dials-support@lists.sourceforge.net ? ? ? ? ? ? ? DIALS ? ? package 1.14.5-g19190e3b9-release 2 ? 'data scaling' ? ? 'Phil Evans' pre@mrc-lmb.cam.ac.uk 2018-12-13 ? ? ? ? http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html ? Aimless ? ? program 0.7.4 3 ? phasing ? ? 'Randy J. Read' cimr-phaser@lists.cam.ac.uk ? ? ? ? C++ http://www-structmed.cimr.cam.ac.uk/phaser/ ? PHASER ? ? program 2.8.3 4 ? refinement ? ? 'Paul D. Adams' PDAdams@lbl.gov ? ? ? ? C++ http://www.phenix-online.org/ ? PHENIX ? ? program 1.17.1_3660 5 ? 'data extraction' ? ? ? ? ? ? ? ? C++ ? ? PDB_EXTRACT ? ? package 3.25 6 # _pdbx_entry_details.entry_id 6VZX _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD1 A HYP 23 ? ? O A HOH 101 ? ? 1.99 2 1 OD1 C HYP 23 ? ? O C HOH 101 ? ? 2.01 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACE C C N N 1 ACE O O N N 2 ACE CH3 C N N 3 ACE H H N N 4 ACE H1 H N N 5 ACE H2 H N N 6 ACE H3 H N N 7 GLU N N N N 8 GLU CA C N S 9 GLU C C N N 10 GLU O O N N 11 GLU CB C N N 12 GLU CG C N N 13 GLU CD C N N 14 GLU OE1 O N N 15 GLU OE2 O N N 16 GLU OXT O N N 17 GLU H H N N 18 GLU H2 H N N 19 GLU HA H N N 20 GLU HB2 H N N 21 GLU HB3 H N N 22 GLU HG2 H N N 23 GLU HG3 H N N 24 GLU HE2 H N N 25 GLU HXT H N N 26 GLY N N N N 27 GLY CA C N N 28 GLY C C N N 29 GLY O O N N 30 GLY OXT O N N 31 GLY H H N N 32 GLY H2 H N N 33 GLY HA2 H N N 34 GLY HA3 H N N 35 GLY HXT H N N 36 HOH O O N N 37 HOH H1 H N N 38 HOH H2 H N N 39 HYP N N N N 40 HYP CA C N S 41 HYP C C N N 42 HYP O O N N 43 HYP CB C N N 44 HYP CG C N R 45 HYP CD C N N 46 HYP OD1 O N N 47 HYP OXT O N N 48 HYP H H N N 49 HYP HA H N N 50 HYP HB2 H N N 51 HYP HB3 H N N 52 HYP HG H N N 53 HYP HD22 H N N 54 HYP HD23 H N N 55 HYP HD1 H N N 56 HYP HXT H N N 57 LYS N N N N 58 LYS CA C N S 59 LYS C C N N 60 LYS O O N N 61 LYS CB C N N 62 LYS CG C N N 63 LYS CD C N N 64 LYS CE C N N 65 LYS NZ N N N 66 LYS OXT O N N 67 LYS H H N N 68 LYS H2 H N N 69 LYS HA H N N 70 LYS HB2 H N N 71 LYS HB3 H N N 72 LYS HG2 H N N 73 LYS HG3 H N N 74 LYS HD2 H N N 75 LYS HD3 H N N 76 LYS HE2 H N N 77 LYS HE3 H N N 78 LYS HZ1 H N N 79 LYS HZ2 H N N 80 LYS HZ3 H N N 81 LYS HXT H N N 82 NH2 N N N N 83 NH2 HN1 H N N 84 NH2 HN2 H N N 85 PRO N N N N 86 PRO CA C N S 87 PRO C C N N 88 PRO O O N N 89 PRO CB C N N 90 PRO CG C N N 91 PRO CD C N N 92 PRO OXT O N N 93 PRO H H N N 94 PRO HA H N N 95 PRO HB2 H N N 96 PRO HB3 H N N 97 PRO HG2 H N N 98 PRO HG3 H N N 99 PRO HD2 H N N 100 PRO HD3 H N N 101 PRO HXT H N N 102 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACE C O doub N N 1 ACE C CH3 sing N N 2 ACE C H sing N N 3 ACE CH3 H1 sing N N 4 ACE CH3 H2 sing N N 5 ACE CH3 H3 sing N N 6 GLU N CA sing N N 7 GLU N H sing N N 8 GLU N H2 sing N N 9 GLU CA C sing N N 10 GLU CA CB sing N N 11 GLU CA HA sing N N 12 GLU C O doub N N 13 GLU C OXT sing N N 14 GLU CB CG sing N N 15 GLU CB HB2 sing N N 16 GLU CB HB3 sing N N 17 GLU CG CD sing N N 18 GLU CG HG2 sing N N 19 GLU CG HG3 sing N N 20 GLU CD OE1 doub N N 21 GLU CD OE2 sing N N 22 GLU OE2 HE2 sing N N 23 GLU OXT HXT sing N N 24 GLY N CA sing N N 25 GLY N H sing N N 26 GLY N H2 sing N N 27 GLY CA C sing N N 28 GLY CA HA2 sing N N 29 GLY CA HA3 sing N N 30 GLY C O doub N N 31 GLY C OXT sing N N 32 GLY OXT HXT sing N N 33 HOH O H1 sing N N 34 HOH O H2 sing N N 35 HYP N CA sing N N 36 HYP N CD sing N N 37 HYP N H sing N N 38 HYP CA C sing N N 39 HYP CA CB sing N N 40 HYP CA HA sing N N 41 HYP C O doub N N 42 HYP C OXT sing N N 43 HYP CB CG sing N N 44 HYP CB HB2 sing N N 45 HYP CB HB3 sing N N 46 HYP CG CD sing N N 47 HYP CG OD1 sing N N 48 HYP CG HG sing N N 49 HYP CD HD22 sing N N 50 HYP CD HD23 sing N N 51 HYP OD1 HD1 sing N N 52 HYP OXT HXT sing N N 53 LYS N CA sing N N 54 LYS N H sing N N 55 LYS N H2 sing N N 56 LYS CA C sing N N 57 LYS CA CB sing N N 58 LYS CA HA sing N N 59 LYS C O doub N N 60 LYS C OXT sing N N 61 LYS CB CG sing N N 62 LYS CB HB2 sing N N 63 LYS CB HB3 sing N N 64 LYS CG CD sing N N 65 LYS CG HG2 sing N N 66 LYS CG HG3 sing N N 67 LYS CD CE sing N N 68 LYS CD HD2 sing N N 69 LYS CD HD3 sing N N 70 LYS CE NZ sing N N 71 LYS CE HE2 sing N N 72 LYS CE HE3 sing N N 73 LYS NZ HZ1 sing N N 74 LYS NZ HZ2 sing N N 75 LYS NZ HZ3 sing N N 76 LYS OXT HXT sing N N 77 NH2 N HN1 sing N N 78 NH2 N HN2 sing N N 79 PRO N CA sing N N 80 PRO N CD sing N N 81 PRO N H sing N N 82 PRO CA C sing N N 83 PRO CA CB sing N N 84 PRO CA HA sing N N 85 PRO C O doub N N 86 PRO C OXT sing N N 87 PRO CB CG sing N N 88 PRO CB HB2 sing N N 89 PRO CB HB3 sing N N 90 PRO CG CD sing N N 91 PRO CG HG2 sing N N 92 PRO CG HG3 sing N N 93 PRO CD HD2 sing N N 94 PRO CD HD3 sing N N 95 PRO OXT HXT sing N N 96 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Foundation (NSF, United States)' 'United States' 'CHE 1709631' 1 'Welch Foundation' 'United States' C1557 2 'National Science Foundation (NSF, United States)' 'United States' STC-1231306 3 'Cancer Prevention and Research Institute of Texas (CPRIT)' 'United States' RP160652 4 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3T4F _pdbx_initial_refinement_model.details ? # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'gel filtration' ? 2 1 'mass spectrometry' 'mass spectrometry confirms the covalent linkage of the three chains' #