HEADER TRANSFERASE 28-FEB-20 6VZZ TITLE CRYSTAL STRUCTURE OF GLUCOKINASE FROM BALAMUTHIA MANDRILLARIS IN TITLE 2 COMPLEX WITH GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BAMAA.19900.A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BALAMUTHIA MANDRILLARIS; SOURCE 3 ORGANISM_TAXID: 66527; SOURCE 4 STRAIN: CDC:V039: BABOON/SAN DIEGO/1986; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: BAMAA.19900.A.MP3 KEYWDS SSGCID, GLUCOKINASE, BALAMUTHIA MANDRILLARIS LEPTO ID, STRUCTURAL KEYWDS 2 GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 11-OCT-23 6VZZ 1 REMARK REVDAT 3 15-JUN-22 6VZZ 1 JRNL HETSYN REVDAT 2 29-JUL-20 6VZZ 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 25-MAR-20 6VZZ 0 JRNL AUTH J.E.MILANES,J.SURYADI,N.P.MONAGHAN,E.M.HARDING,C.S.MORRIS, JRNL AUTH 2 S.D.ROZEMA,M.M.KHALIFA,J.E.GOLDEN,I.Q.PHAN,R.ZIGWEID, JRNL AUTH 3 J.ABENDROTH,C.A.RICE,H.T.MCCORD,S.WILSON,M.K.FENWICK, JRNL AUTH 4 J.C.MORRIS JRNL TITL CHARACTERIZATION OF GLUCOKINASES FROM PATHOGENIC FREE-LIVING JRNL TITL 2 AMOEBAE. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. 37321 2022 JRNL REFN ESSN 1098-6596 JRNL PMID 35604214 JRNL DOI 10.1128/AAC.02373-21 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 19851 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.340 REMARK 3 FREE R VALUE TEST SET COUNT : 2052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7400 - 6.5300 0.97 1297 150 0.1738 0.1727 REMARK 3 2 6.5300 - 5.1900 0.99 1224 149 0.1707 0.2138 REMARK 3 3 5.1800 - 4.5300 1.00 1219 127 0.1447 0.1853 REMARK 3 4 4.5300 - 4.1200 1.00 1193 141 0.1399 0.1517 REMARK 3 5 4.1200 - 3.8200 1.00 1202 136 0.1472 0.1980 REMARK 3 6 3.8200 - 3.6000 1.00 1165 138 0.1653 0.1852 REMARK 3 7 3.6000 - 3.4200 1.00 1158 151 0.1900 0.2000 REMARK 3 8 3.4200 - 3.2700 1.00 1191 135 0.1953 0.2740 REMARK 3 9 3.2700 - 3.1400 1.00 1177 130 0.2120 0.2403 REMARK 3 10 3.1400 - 3.0300 1.00 1149 130 0.2052 0.2491 REMARK 3 11 3.0300 - 2.9400 1.00 1188 136 0.2163 0.2565 REMARK 3 12 2.9400 - 2.8600 1.00 1173 116 0.2088 0.2522 REMARK 3 13 2.8500 - 2.7800 1.00 1160 134 0.1930 0.2203 REMARK 3 14 2.7800 - 2.7100 1.00 1147 128 0.1944 0.2347 REMARK 3 15 2.7100 - 2.6500 1.00 1156 151 0.2228 0.2490 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.247 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.043 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2896 REMARK 3 ANGLE : 0.755 3939 REMARK 3 CHIRALITY : 0.045 457 REMARK 3 PLANARITY : 0.005 511 REMARK 3 DIHEDRAL : 20.159 1017 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3531 -54.2937 15.7823 REMARK 3 T TENSOR REMARK 3 T11: 0.4631 T22: 0.2378 REMARK 3 T33: 0.3820 T12: 0.0897 REMARK 3 T13: 0.0398 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 5.0281 L22: 2.6606 REMARK 3 L33: 5.9029 L12: -1.5084 REMARK 3 L13: 4.1517 L23: -2.3263 REMARK 3 S TENSOR REMARK 3 S11: 0.0705 S12: 0.0847 S13: 0.0573 REMARK 3 S21: 0.2471 S22: 0.0066 S23: -0.2320 REMARK 3 S31: -0.2828 S32: 0.0713 S33: -0.0532 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7012 -47.9617 16.6273 REMARK 3 T TENSOR REMARK 3 T11: 0.4098 T22: 0.2806 REMARK 3 T33: 0.2482 T12: 0.0407 REMARK 3 T13: 0.0179 T23: 0.0555 REMARK 3 L TENSOR REMARK 3 L11: 4.7838 L22: 4.9598 REMARK 3 L33: 1.1667 L12: -3.0722 REMARK 3 L13: -1.0364 L23: 1.5278 REMARK 3 S TENSOR REMARK 3 S11: 0.0728 S12: -0.1542 S13: 0.0753 REMARK 3 S21: 0.3516 S22: 0.0779 S23: -0.1524 REMARK 3 S31: 0.1707 S32: 0.0406 S33: -0.1372 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 380 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0468 -31.8761 5.1551 REMARK 3 T TENSOR REMARK 3 T11: 0.4769 T22: 0.2958 REMARK 3 T33: 0.4516 T12: 0.0510 REMARK 3 T13: 0.1557 T23: 0.0897 REMARK 3 L TENSOR REMARK 3 L11: 2.4499 L22: 1.0325 REMARK 3 L33: 2.0146 L12: -0.2061 REMARK 3 L13: 0.6472 L23: 0.3397 REMARK 3 S TENSOR REMARK 3 S11: 0.0350 S12: 0.1271 S13: 0.5837 REMARK 3 S21: -0.2332 S22: 0.0288 S23: -0.2125 REMARK 3 S31: -0.2994 S32: 0.2621 S33: -0.0128 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VZZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247394. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19871 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 13.21 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.50 REMARK 200 R MERGE FOR SHELL (I) : 0.60500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 3 DOMAINS OF PDB ENTRY 6DA0 AS PER MORDA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8.35 MG/ML BAMAA.19900.A.MP3.PS38592 REMARK 280 IN 2 MM GLUCOSE, 2 MM AMPPNP, 2 MM MAGNESIUM CHLORIDE AGAINST REMARK 280 RIGAKUREAGENTS WIZARD 3/4 SCREEN, CONDITION E11 (30% V/V PEG300, REMARK 280 200 MM CALCIUM ACETATE, 100 MM SODIUM CACODYLATE/HCL, PH 6.5), REMARK 280 DIRECT CRYOPROTECTION, TRAY 311701E11, PUCK ZCG0-8, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 78.65000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.65000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 78.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.65000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 78.65000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 78.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 78.65000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 78.65000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 78.65000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 78.65000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 78.65000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 78.65000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 78.65000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 78.65000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 78.65000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 78.65000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 78.65000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 78.65000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 117.97500 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 39.32500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 39.32500 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 117.97500 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 117.97500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 117.97500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 39.32500 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 39.32500 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 117.97500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 39.32500 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 117.97500 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 39.32500 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 117.97500 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 39.32500 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 39.32500 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 39.32500 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 117.97500 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 39.32500 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 117.97500 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 117.97500 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 117.97500 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 39.32500 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 39.32500 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 117.97500 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 117.97500 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 39.32500 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 39.32500 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 39.32500 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 39.32500 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 117.97500 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 39.32500 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 117.97500 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 39.32500 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 117.97500 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 117.97500 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 117.97500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -39.32500 REMARK 350 BIOMT2 2 0.000000 0.000000 -1.000000 -39.32500 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 -39.32500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 403 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ARG A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 ARG A 194 REMARK 465 SER A 195 REMARK 465 PRO A 196 REMARK 465 VAL A 197 REMARK 465 ARG A 198 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 GLN A 5 CG CD OE1 NE2 REMARK 470 GLU A 6 CG CD OE1 OE2 REMARK 470 GLN A 9 CG CD OE1 NE2 REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 LYS A 167 CG CD CE NZ REMARK 470 LYS A 236 CG CD CE NZ REMARK 470 GLU A 241 CG CD OE1 OE2 REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 GLN A 269 CG CD OE1 NE2 REMARK 470 GLU A 271 CG CD OE1 OE2 REMARK 470 LEU A 273 CG CD1 CD2 REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 LYS A 283 CG CD CE NZ REMARK 470 GLU A 289 CG CD OE1 OE2 REMARK 470 GLU A 356 CG CD OE1 OE2 REMARK 470 LYS A 365 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 551 O HOH A 553 2.11 REMARK 500 OD1 ASP A 264 NH1 ARG A 274 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 192 -161.72 -102.28 REMARK 500 LYS A 351 35.61 -94.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 82 OE1 REMARK 620 2 GLU A 82 OE2 51.5 REMARK 620 3 PRO A 162 O 69.6 91.6 REMARK 620 4 HOH A 501 O 108.3 56.8 113.8 REMARK 620 5 HOH A 535 O 98.0 147.1 87.3 150.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 172 O REMARK 620 2 ASP A 173 OD1 65.4 REMARK 620 3 HOH A 543 O 136.3 72.1 REMARK 620 4 HOH A 555 O 97.3 76.1 81.9 REMARK 620 5 HOH A 565 O 98.4 159.8 125.3 95.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 235 OE1 REMARK 620 2 GLU A 235 OE2 49.7 REMARK 620 3 GLU A 235 OE1 0.0 49.7 REMARK 620 4 GLU A 235 OE2 49.7 0.0 49.7 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BAMAA.19900.A RELATED DB: TARGETTRACK DBREF 6VZZ A -10 380 PDB 6VZZ 6VZZ -10 380 SEQRES 1 A 391 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER GLU SEQRES 2 A 391 LEU SER GLN GLU VAL THR GLN THR LEU LYS GLN TRP ARG SEQRES 3 A 391 VAL ALA ALA VAL SER SER ALA GLY LEU LYS TYR TYR VAL SEQRES 4 A 391 GLY VAL ASP ILE GLY GLY THR ASN THR ARG LEU ALA LEU SEQRES 5 A 391 ALA ARG ALA GLU ASP HIS ASP THR PHE LEU GLN VAL LEU SEQRES 6 A 391 LYS VAL LYS ALA ASP ASP THR ARG LYS LEU ILE ALA PHE SEQRES 7 A 391 PHE ASP SER VAL SER ASP SER ILE ARG ASP LEU LEU GLY SEQRES 8 A 391 VAL GLU ALA SER GLY ALA CYS LEU ALA GLY ALA GLY ARG SEQRES 9 A 391 ILE SER PRO ASP GLY GLU VAL LEU ASP VAL THR ASN PHE SEQRES 10 A 391 HIS GLY ASP ALA THR HIS ARG ARG LEU LYS ARG SER GLU SEQRES 11 A 391 LEU PRO SER PHE LEU PHE PRO PRO THR LYS THR HIS PHE SEQRES 12 A 391 ILE ASN ASP LEU GLU GLY THR CYS TYR GLY VAL SER SER SEQRES 13 A 391 MET ASN ALA SER ASP ALA LEU ASP GLN CYS PHE LYS PRO SEQRES 14 A 391 LEU TRP GLY PRO ALA SER SER ASP LYS VAL THR LEU GLN SEQRES 15 A 391 PRO ASP HIS TYR LEU VAL LEU ALA VAL GLY THR GLY LEU SEQRES 16 A 391 GLY ILE ALA THR LEU LEU SER LEU ARG ARG SER PRO VAL SEQRES 17 A 391 ARG GLY GLY PHE GLN VAL MET PRO MET GLU PHE GLY HIS SEQRES 18 A 391 VAL ALA ILE SER PRO VAL GLY PRO ALA ASN ALA ALA TYR SEQRES 19 A 391 ALA GLU GLU THR ARG LEU LEU GLU TYR ILE SER GLU LYS SEQRES 20 A 391 LEU TYR ASN LYS GLU HIS ALA ILE GLU TYR GLU ASP ILE SEQRES 21 A 391 VAL SER GLY ARG GLY LEU VAL ILE THR TYR LYS TRP VAL SEQRES 22 A 391 LEU ASP GLU ALA ASN VAL GLN ASP GLU SER LEU ARG SER SEQRES 23 A 391 LEU ASP ALA GLY LYS ILE ALA LYS ASN ALA THR ASN SER SEQRES 24 A 391 GLU ALA CYS PRO TYR ALA HIS LYS ALA MET MET LEU HIS SEQRES 25 A 391 PHE LYS PHE LEU MET ARG ILE ALA LYS ASN LEU CYS ILE SEQRES 26 A 391 GLY LEU GLN VAL ARG GLY MET LEU LEU ALA GLY ASP ASN SEQRES 27 A 391 GLN VAL ASN ASN ASN LEU PHE LEU GLU GLN ASN LEU GLU SEQRES 28 A 391 SER LEU ARG ALA GLU PHE PHE ASP HIS PRO LYS LYS ALA SEQRES 29 A 391 TRP ILE GLU ASP ILE ASP LEU PHE THR GLN THR LYS PRO SEQRES 30 A 391 VAL ASN LEU ASN LEU HIS GLY ALA LEU TYR VAL ALA ARG SEQRES 31 A 391 GLY HET BGC A 401 12 HET CA A 402 1 HET CA A 403 1 HET CA A 404 1 HET EDO A 405 4 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 BGC C6 H12 O6 FORMUL 3 CA 3(CA 2+) FORMUL 6 EDO C2 H6 O2 FORMUL 7 HOH *67(H2 O) HELIX 1 AA1 SER A 4 ARG A 15 1 12 HELIX 2 AA2 VAL A 16 SER A 20 5 5 HELIX 3 AA3 ASP A 60 GLY A 80 1 21 HELIX 4 AA4 ASP A 109 ARG A 113 1 5 HELIX 5 AA5 SER A 118 LEU A 120 5 3 HELIX 6 AA6 ASP A 135 SER A 149 1 15 HELIX 7 AA7 ALA A 151 GLN A 154 5 4 HELIX 8 AA8 GLU A 207 VAL A 211 5 5 HELIX 9 AA9 ALA A 222 ASN A 239 1 18 HELIX 10 AB1 GLU A 245 ILE A 249 5 5 HELIX 11 AB2 SER A 251 ALA A 266 1 16 HELIX 12 AB3 SER A 272 LEU A 276 5 5 HELIX 13 AB4 ASP A 277 ALA A 285 1 9 HELIX 14 AB5 CYS A 291 GLN A 317 1 27 HELIX 15 AB6 GLY A 325 ASN A 330 1 6 HELIX 16 AB7 ASN A 331 ASN A 338 1 8 HELIX 17 AB8 ASN A 338 PHE A 347 1 10 HELIX 18 AB9 LYS A 351 GLU A 356 1 6 HELIX 19 AC1 ASN A 368 ARG A 379 1 12 SHEET 1 AA1 5 LEU A 51 LYS A 57 0 SHEET 2 AA1 5 ASN A 36 ARG A 43 -1 N LEU A 41 O LEU A 51 SHEET 3 AA1 5 TYR A 26 ILE A 32 -1 N TYR A 27 O ALA A 42 SHEET 4 AA1 5 GLY A 85 GLY A 90 1 O ALA A 89 N VAL A 30 SHEET 5 AA1 5 THR A 130 ASN A 134 1 O HIS A 131 N LEU A 88 SHEET 1 AA2 3 GLY A 92 ILE A 94 0 SHEET 2 AA2 3 VAL A 100 VAL A 103 -1 O ASP A 102 N ARG A 93 SHEET 3 AA2 3 ARG A 114 LYS A 116 -1 O LEU A 115 N LEU A 101 SHEET 1 AA3 6 PHE A 156 TRP A 160 0 SHEET 2 AA3 6 ASP A 359 GLN A 363 -1 O LEU A 360 N LEU A 159 SHEET 3 AA3 6 GLY A 320 ALA A 324 1 N MET A 321 O PHE A 361 SHEET 4 AA3 6 TYR A 175 VAL A 180 1 N LEU A 178 O ALA A 324 SHEET 5 AA3 6 LEU A 184 LEU A 190 -1 O LEU A 189 N TYR A 175 SHEET 6 AA3 6 GLN A 202 PRO A 205 -1 O GLN A 202 N LEU A 190 LINK OE1 GLU A 82 CA CA A 402 1555 1555 2.52 LINK OE2 GLU A 82 CA CA A 402 1555 1555 2.59 LINK O PRO A 162 CA CA A 402 1555 21455 2.35 LINK O PRO A 172 CA CA A 404 1555 1555 2.46 LINK OD1 ASP A 173 CA CA A 404 1555 1555 2.69 LINK OE1 GLU A 235 CA CA A 403 1555 1555 2.48 LINK OE2 GLU A 235 CA CA A 403 1555 1555 2.77 LINK OE1 GLU A 235 CA CA A 403 1555 14444 2.48 LINK OE2 GLU A 235 CA CA A 403 1555 14444 2.77 LINK CA CA A 402 O HOH A 501 1555 1555 2.36 LINK CA CA A 402 O HOH A 535 1555 23545 2.27 LINK CA CA A 404 O HOH A 543 1555 1555 2.34 LINK CA CA A 404 O HOH A 555 1555 1555 3.13 LINK CA CA A 404 O HOH A 565 1555 1555 2.82 CRYST1 157.300 157.300 157.300 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006357 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006357 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006357 0.00000