HEADER TOXIN 29-FEB-20 6W08 TITLE CRYSTAL STRUCTURE OF MOTILITY ASSOCIATED KILLING FACTOR E FROM VIBRIO TITLE 2 CHOLERAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOTILITY ASSOCIATED KILLING FACTOR E; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR EL TOR STR. N16961; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: ATCC 39315 / EL TOR INABA N16961; SOURCE 5 GENE: VC_A0884; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRIPARTITE PORE FORMING TOXIN, CYTOTOXIN, STRUCTURAL GENOMICS, CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,R.JEDRZEJCZAK,G.JOACHIMIAK,M.ENDRES,A.JOACHIMIAK,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 3 03-APR-24 6W08 1 REMARK REVDAT 2 13-JUL-22 6W08 1 JRNL LINK REVDAT 1 11-MAR-20 6W08 0 JRNL AUTH A.HERRERA,Y.KIM,J.CHEN,R.JEDRZEJCZAK,S.SHUKLA,N.MALTSEVA, JRNL AUTH 2 G.JOACHIMIAK,L.WELK,G.WIERSUM,L.JAROSZEWSKI,A.GODZIK, JRNL AUTH 3 A.JOACHIMIAK,K.J.F.SATCHELL JRNL TITL A GENOMIC ISLAND OF VIBRIO CHOLERAE ENCODES A JRNL TITL 2 THREE-COMPONENT CYTOTOXIN WITH MONOMER AND PROTOMER FORMS JRNL TITL 3 STRUCTURALLY SIMILAR TO ALPHA-PORE-FORMING TOXINS. JRNL REF J.BACTERIOL. V. 204 55521 2022 JRNL REFN ESSN 1098-5530 JRNL PMID 35435721 JRNL DOI 10.1128/JB.00555-21 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 74012 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 3656 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.4900 - 5.1800 0.98 2885 130 0.1797 0.1801 REMARK 3 2 5.1800 - 4.1200 0.99 2776 175 0.1464 0.1422 REMARK 3 3 4.1200 - 3.6000 0.97 2696 176 0.1498 0.1836 REMARK 3 4 3.6000 - 3.2700 0.99 2780 139 0.1721 0.1832 REMARK 3 5 3.2700 - 3.0300 0.99 2817 137 0.1788 0.2144 REMARK 3 6 3.0300 - 2.8500 0.99 2753 147 0.1824 0.2046 REMARK 3 7 2.8500 - 2.7100 0.99 2751 162 0.1727 0.2129 REMARK 3 8 2.7100 - 2.5900 0.96 2677 129 0.1766 0.1906 REMARK 3 9 2.5900 - 2.4900 0.98 2706 138 0.1775 0.2399 REMARK 3 10 2.4900 - 2.4100 0.99 2769 135 0.1725 0.2422 REMARK 3 11 2.4100 - 2.3300 0.99 2776 111 0.1681 0.1936 REMARK 3 12 2.3300 - 2.2700 0.98 2686 148 0.1629 0.2241 REMARK 3 13 2.2700 - 2.2100 0.98 2725 146 0.1588 0.1699 REMARK 3 14 2.2100 - 2.1500 0.98 2701 150 0.1579 0.2116 REMARK 3 15 2.1500 - 2.1000 0.98 2733 172 0.1736 0.2079 REMARK 3 16 2.1000 - 2.0600 0.97 2649 132 0.1863 0.2304 REMARK 3 17 2.0600 - 2.0200 0.95 2646 140 0.1914 0.2401 REMARK 3 18 2.0200 - 1.9800 0.98 2698 134 0.1916 0.2274 REMARK 3 19 1.9800 - 1.9400 0.98 2699 150 0.2048 0.2512 REMARK 3 20 1.9400 - 1.9100 0.98 2679 143 0.2012 0.2420 REMARK 3 21 1.9100 - 1.8800 0.98 2698 146 0.2142 0.2213 REMARK 3 22 1.8800 - 1.8500 0.98 2697 142 0.2269 0.2934 REMARK 3 23 1.8500 - 1.8200 0.97 2679 129 0.2566 0.2771 REMARK 3 24 1.8200 - 1.8000 0.95 2593 127 0.2740 0.3096 REMARK 3 25 1.8000 - 1.7700 0.94 2663 106 0.2956 0.2679 REMARK 3 26 1.7700 - 1.7500 0.87 2424 112 0.3147 0.3545 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.211 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.617 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5743 REMARK 3 ANGLE : 0.533 7820 REMARK 3 CHIRALITY : 0.038 937 REMARK 3 PLANARITY : 0.003 1032 REMARK 3 DIHEDRAL : 14.377 3501 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6078 4.8656 21.9706 REMARK 3 T TENSOR REMARK 3 T11: 0.2226 T22: 0.2894 REMARK 3 T33: 0.1800 T12: 0.0578 REMARK 3 T13: 0.0038 T23: 0.0281 REMARK 3 L TENSOR REMARK 3 L11: 3.7650 L22: 3.4597 REMARK 3 L33: 3.4351 L12: 2.5106 REMARK 3 L13: 2.5505 L23: 2.4285 REMARK 3 S TENSOR REMARK 3 S11: -0.0490 S12: 0.1661 S13: 0.0777 REMARK 3 S21: -0.1236 S22: -0.0495 S23: 0.0084 REMARK 3 S31: -0.0229 S32: -0.1023 S33: -0.0586 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3467 18.0689 30.3073 REMARK 3 T TENSOR REMARK 3 T11: 0.2406 T22: 0.2381 REMARK 3 T33: 0.2620 T12: 0.0594 REMARK 3 T13: 0.0084 T23: 0.0275 REMARK 3 L TENSOR REMARK 3 L11: 5.5237 L22: 1.6986 REMARK 3 L33: 3.0989 L12: 1.4877 REMARK 3 L13: 2.1226 L23: 0.8940 REMARK 3 S TENSOR REMARK 3 S11: 0.2191 S12: 0.0631 S13: 0.5913 REMARK 3 S21: 0.2081 S22: -0.2810 S23: 0.1334 REMARK 3 S31: 0.1011 S32: -0.1191 S33: 0.1376 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5164 2.0371 12.7641 REMARK 3 T TENSOR REMARK 3 T11: 0.3073 T22: 0.5254 REMARK 3 T33: 0.2616 T12: -0.0019 REMARK 3 T13: 0.0030 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 3.3897 L22: 1.7070 REMARK 3 L33: 1.6422 L12: 1.3644 REMARK 3 L13: 1.6334 L23: 1.1906 REMARK 3 S TENSOR REMARK 3 S11: -0.1509 S12: 0.2494 S13: 0.0063 REMARK 3 S21: -0.2968 S22: -0.0787 S23: 0.2294 REMARK 3 S31: 0.0152 S32: -0.3313 S33: 0.2604 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4648 9.8415 21.3462 REMARK 3 T TENSOR REMARK 3 T11: 0.2333 T22: 0.4394 REMARK 3 T33: 0.2028 T12: 0.0353 REMARK 3 T13: 0.0138 T23: 0.0607 REMARK 3 L TENSOR REMARK 3 L11: 8.6864 L22: 6.8301 REMARK 3 L33: 2.5005 L12: 5.8873 REMARK 3 L13: 1.9154 L23: 1.1524 REMARK 3 S TENSOR REMARK 3 S11: -0.4156 S12: 1.1924 S13: 0.3848 REMARK 3 S21: -0.4931 S22: 0.4597 S23: 0.2047 REMARK 3 S31: -0.1176 S32: 0.2252 S33: -0.0317 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3877 -3.2974 26.5369 REMARK 3 T TENSOR REMARK 3 T11: 0.3090 T22: 0.3370 REMARK 3 T33: 0.3125 T12: 0.0015 REMARK 3 T13: -0.0110 T23: -0.1009 REMARK 3 L TENSOR REMARK 3 L11: 0.9423 L22: 0.8189 REMARK 3 L33: 2.2178 L12: -0.6159 REMARK 3 L13: -0.7393 L23: -0.3548 REMARK 3 S TENSOR REMARK 3 S11: -0.0349 S12: 0.7197 S13: -0.7649 REMARK 3 S21: -0.2449 S22: 0.2569 S23: -0.3794 REMARK 3 S31: 0.3924 S32: -0.1071 S33: 0.1080 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 209 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9674 5.7205 33.4222 REMARK 3 T TENSOR REMARK 3 T11: 0.2607 T22: 0.2902 REMARK 3 T33: 0.2481 T12: -0.0171 REMARK 3 T13: -0.0112 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 4.3631 L22: 2.9193 REMARK 3 L33: 3.0295 L12: 3.1931 REMARK 3 L13: 2.8535 L23: 2.9364 REMARK 3 S TENSOR REMARK 3 S11: 0.1497 S12: -0.1017 S13: -0.0491 REMARK 3 S21: 0.1933 S22: -0.1165 S23: -0.0613 REMARK 3 S31: 0.2055 S32: -0.1955 S33: -0.0851 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 231 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.7124 7.3690 29.9153 REMARK 3 T TENSOR REMARK 3 T11: 0.1950 T22: 0.2667 REMARK 3 T33: 0.2256 T12: 0.0459 REMARK 3 T13: 0.0085 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 4.4590 L22: 3.3898 REMARK 3 L33: 1.9787 L12: 2.5696 REMARK 3 L13: 2.0614 L23: 1.7424 REMARK 3 S TENSOR REMARK 3 S11: 0.1003 S12: 0.4357 S13: -0.2529 REMARK 3 S21: 0.0797 S22: 0.1344 S23: -0.4034 REMARK 3 S31: 0.1444 S32: 0.2407 S33: -0.2362 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 265 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4763 4.3490 9.8345 REMARK 3 T TENSOR REMARK 3 T11: 0.3671 T22: 0.5540 REMARK 3 T33: 0.2669 T12: 0.0108 REMARK 3 T13: -0.0037 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 7.8251 L22: 3.7262 REMARK 3 L33: 4.5290 L12: 4.4386 REMARK 3 L13: 5.1972 L23: 3.5262 REMARK 3 S TENSOR REMARK 3 S11: -0.4207 S12: 0.7068 S13: 0.0335 REMARK 3 S21: -0.5155 S22: 0.1999 S23: 0.1978 REMARK 3 S31: -0.2897 S32: 0.0420 S33: 0.2447 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 310 THROUGH 341 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5598 -13.5864 6.4751 REMARK 3 T TENSOR REMARK 3 T11: 0.4849 T22: 0.6054 REMARK 3 T33: 0.4329 T12: -0.1005 REMARK 3 T13: 0.0429 T23: -0.1332 REMARK 3 L TENSOR REMARK 3 L11: 6.0224 L22: 3.3349 REMARK 3 L33: 5.7691 L12: 2.2253 REMARK 3 L13: 4.7849 L23: 1.7912 REMARK 3 S TENSOR REMARK 3 S11: 0.1280 S12: 0.3699 S13: -0.7663 REMARK 3 S21: -0.1722 S22: -0.1994 S23: -0.0843 REMARK 3 S31: 0.9168 S32: -0.1721 S33: 0.0491 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 342 THROUGH 358 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2507 -0.8952 35.4669 REMARK 3 T TENSOR REMARK 3 T11: 0.3500 T22: 0.2591 REMARK 3 T33: 0.4032 T12: 0.0293 REMARK 3 T13: -0.0790 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.9987 L22: 1.8121 REMARK 3 L33: 5.6719 L12: 0.2280 REMARK 3 L13: 2.2869 L23: 0.4682 REMARK 3 S TENSOR REMARK 3 S11: 0.7547 S12: -0.3320 S13: -1.1018 REMARK 3 S21: 0.5326 S22: -0.2089 S23: -0.7175 REMARK 3 S31: 0.1965 S32: 0.2104 S33: -0.3217 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0845 -0.4159 51.5736 REMARK 3 T TENSOR REMARK 3 T11: 0.2261 T22: 0.2095 REMARK 3 T33: 0.1565 T12: 0.0032 REMARK 3 T13: 0.0235 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 2.5934 L22: 4.5635 REMARK 3 L33: 1.4560 L12: -2.5747 REMARK 3 L13: 1.4081 L23: -1.9447 REMARK 3 S TENSOR REMARK 3 S11: 0.0241 S12: 0.0527 S13: 0.0349 REMARK 3 S21: -0.0632 S22: -0.0731 S23: -0.1303 REMARK 3 S31: 0.1006 S32: 0.1098 S33: 0.0377 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 104 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2131 4.2554 59.2777 REMARK 3 T TENSOR REMARK 3 T11: 0.2512 T22: 0.2131 REMARK 3 T33: 0.1802 T12: 0.0032 REMARK 3 T13: 0.0098 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 5.9447 L22: 5.9944 REMARK 3 L33: 1.2060 L12: -5.1842 REMARK 3 L13: 2.4309 L23: -2.1255 REMARK 3 S TENSOR REMARK 3 S11: -0.4026 S12: -0.2396 S13: 0.3240 REMARK 3 S21: 0.5498 S22: 0.1938 S23: -0.4646 REMARK 3 S31: -0.1660 S32: 0.0157 S33: 0.2384 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 160 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0255 1.8566 49.2023 REMARK 3 T TENSOR REMARK 3 T11: 0.2586 T22: 0.1894 REMARK 3 T33: 0.2259 T12: -0.0357 REMARK 3 T13: -0.0030 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 2.9728 L22: 1.1479 REMARK 3 L33: 2.0378 L12: -0.6910 REMARK 3 L13: -1.0480 L23: 0.6179 REMARK 3 S TENSOR REMARK 3 S11: -0.1314 S12: -0.1641 S13: -0.1646 REMARK 3 S21: 0.1818 S22: 0.0602 S23: 0.0573 REMARK 3 S31: 0.2541 S32: -0.0040 S33: 0.0508 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 209 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5358 2.2068 50.8049 REMARK 3 T TENSOR REMARK 3 T11: 0.1961 T22: 0.1733 REMARK 3 T33: 0.1480 T12: -0.0120 REMARK 3 T13: 0.0439 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 2.7934 L22: 1.9846 REMARK 3 L33: 0.8993 L12: -1.7343 REMARK 3 L13: 1.3156 L23: -0.8183 REMARK 3 S TENSOR REMARK 3 S11: -0.0613 S12: -0.2070 S13: -0.0540 REMARK 3 S21: 0.0866 S22: 0.0637 S23: 0.0497 REMARK 3 S31: 0.0820 S32: -0.1013 S33: -0.0157 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 310 THROUGH 357 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1628 -14.1842 53.6954 REMARK 3 T TENSOR REMARK 3 T11: 0.2346 T22: 0.1610 REMARK 3 T33: 0.2410 T12: -0.0042 REMARK 3 T13: 0.0255 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 3.6124 L22: 3.1883 REMARK 3 L33: 3.4253 L12: -2.1862 REMARK 3 L13: 2.5706 L23: -1.5530 REMARK 3 S TENSOR REMARK 3 S11: 0.3521 S12: -0.0367 S13: -0.5068 REMARK 3 S21: -0.1470 S22: -0.0114 S23: 0.2669 REMARK 3 S31: 0.5073 S32: 0.1295 S33: -0.2999 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6W08 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247311. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74404 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 1.05300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: THE SAME PROTEIN STRUCTURE FROM SAD PHASING WITH A REMARK 200 LOWER RESOLUTION. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM THIOCYANATE 0.1M BIS REMARK 280 TRIS PROPANE PH 6.5 20% W/V PEG 3350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.56700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 192 REMARK 465 SER A 193 REMARK 465 GLU A 359 REMARK 465 MET B 1 REMARK 465 PHE B 358 REMARK 465 GLU B 359 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 32 31.75 -98.00 REMARK 500 GLU A 41 -167.31 -76.14 REMARK 500 LEU A 67 -104.88 -110.78 REMARK 500 ASN A 190 -78.80 -78.77 REMARK 500 ALA A 230 56.74 -144.67 REMARK 500 GLU B 32 35.50 -96.09 REMARK 500 LEU B 67 -117.29 -117.90 REMARK 500 ALA B 230 43.69 -153.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 400 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 253 O REMARK 620 2 LEU A 255 O 103.7 REMARK 620 3 GLN B 253 O 137.6 63.0 REMARK 620 4 LEU B 255 O 137.6 60.3 2.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP95803 RELATED DB: TARGETTRACK DBREF 6W08 A 1 353 UNP Q9KL63 Q9KL63_VIBCH 1 353 DBREF 6W08 B 1 353 UNP Q9KL63 Q9KL63_VIBCH 1 353 SEQADV 6W08 GLU A 354 UNP Q9KL63 EXPRESSION TAG SEQADV 6W08 ASN A 355 UNP Q9KL63 EXPRESSION TAG SEQADV 6W08 LEU A 356 UNP Q9KL63 EXPRESSION TAG SEQADV 6W08 TYR A 357 UNP Q9KL63 EXPRESSION TAG SEQADV 6W08 PHE A 358 UNP Q9KL63 EXPRESSION TAG SEQADV 6W08 GLU A 359 UNP Q9KL63 EXPRESSION TAG SEQADV 6W08 GLU B 354 UNP Q9KL63 EXPRESSION TAG SEQADV 6W08 ASN B 355 UNP Q9KL63 EXPRESSION TAG SEQADV 6W08 LEU B 356 UNP Q9KL63 EXPRESSION TAG SEQADV 6W08 TYR B 357 UNP Q9KL63 EXPRESSION TAG SEQADV 6W08 PHE B 358 UNP Q9KL63 EXPRESSION TAG SEQADV 6W08 GLU B 359 UNP Q9KL63 EXPRESSION TAG SEQRES 1 A 359 MET ASN GLN SER ALA SER GLU GLN LEU GLN THR ASP ILE SEQRES 2 A 359 PRO ALA SER ILE SER ALA MET VAL LEU LEU ASN SER ALA SEQRES 3 A 359 CYS GLN GLY VAL VAL GLU THR TYR ILE ASP GLN GLY ASN SEQRES 4 A 359 ALA GLU HIS TRP TYR ALA GLN VAL GLU GLN ASN LEU ASN SEQRES 5 A 359 ALA VAL GLN LYS LEU VAL ARG GLN TRP ARG LEU SER GLY SEQRES 6 A 359 ASN LEU TYR PHE SER ASN ASP ILE MET ASP SER VAL LEU SEQRES 7 A 359 SER ILE ALA ASN THR PHE LYS ASP SER ASN VAL GLN ILE SEQRES 8 A 359 LEU THR LEU PHE LYS ALA LEU GLU THR ARG PHE ASP THR SEQRES 9 A 359 ALA GLN LEU GLN GLN LEU THR SER LEU ILE LEU THR LEU SEQRES 10 A 359 GLN ASN PRO ILE GLN SER LEU THR SER ASN ILE LYS ARG SEQRES 11 A 359 TYR ASP GLU GLY LEU ASN ALA TRP ALA ARG GLN VAL GLU SEQRES 12 A 359 ASP ALA HIS ASN THR LEU GLN GLN THR ILE ALA GLN ILE SEQRES 13 A 359 GLN GLN GLU GLU VAL SER ILE GLN ALA GLU ILE ILE ALA SEQRES 14 A 359 THR ASN ALA GLN ILE ASP LEU MET LYS GLN GLN ILE ALA SEQRES 15 A 359 ALA PHE LYS THR ALA ILE ALA ASN ALA GLN SER GLN ARG SEQRES 16 A 359 LYS LYS GLY ILE PHE GLU THR ILE PHE GLY VAL VAL LEU SEQRES 17 A 359 ALA PRO PHE THR LEU GLY GLY SER LEU ILE LEU ALA GLY SEQRES 18 A 359 PHE GLY VAL SER SER ILE VAL GLU ALA GLN SER GLU ILE SEQRES 19 A 359 SER SER LEU GLN SER ASP ILE GLN SER SER LEU ASN THR SEQRES 20 A 359 ILE ASN HIS ASP GLN GLN THR LEU SER GLN ASP GLN GLN SEQRES 21 A 359 GLN ILE ALA SER LEU ASN ALA LEU LEU LEU SER VAL ASP SEQRES 22 A 359 GLN VAL ASN ASN ASP CYS ALA ALA ILE SER ARG SER LEU SEQRES 23 A 359 ASP THR LEU GLN THR THR VAL LEU SER LEU TYR ASN GLU SEQRES 24 A 359 THR ASN ASN VAL VAL SER ASN LEU THR LYS ALA GLN ASP SEQRES 25 A 359 SER GLN ALA VAL ILE LEU GLU GLN VAL TRP TYR GLN SER SEQRES 26 A 359 ALA TYR ASN GLU TRP GLN ASP ILE LEU GLU VAL ALA SER SEQRES 27 A 359 THR LEU ASN ASN ALA GLN PRO GLN ILE THR LYS ALA GLN SEQRES 28 A 359 ILE LYS GLU ASN LEU TYR PHE GLU SEQRES 1 B 359 MET ASN GLN SER ALA SER GLU GLN LEU GLN THR ASP ILE SEQRES 2 B 359 PRO ALA SER ILE SER ALA MET VAL LEU LEU ASN SER ALA SEQRES 3 B 359 CYS GLN GLY VAL VAL GLU THR TYR ILE ASP GLN GLY ASN SEQRES 4 B 359 ALA GLU HIS TRP TYR ALA GLN VAL GLU GLN ASN LEU ASN SEQRES 5 B 359 ALA VAL GLN LYS LEU VAL ARG GLN TRP ARG LEU SER GLY SEQRES 6 B 359 ASN LEU TYR PHE SER ASN ASP ILE MET ASP SER VAL LEU SEQRES 7 B 359 SER ILE ALA ASN THR PHE LYS ASP SER ASN VAL GLN ILE SEQRES 8 B 359 LEU THR LEU PHE LYS ALA LEU GLU THR ARG PHE ASP THR SEQRES 9 B 359 ALA GLN LEU GLN GLN LEU THR SER LEU ILE LEU THR LEU SEQRES 10 B 359 GLN ASN PRO ILE GLN SER LEU THR SER ASN ILE LYS ARG SEQRES 11 B 359 TYR ASP GLU GLY LEU ASN ALA TRP ALA ARG GLN VAL GLU SEQRES 12 B 359 ASP ALA HIS ASN THR LEU GLN GLN THR ILE ALA GLN ILE SEQRES 13 B 359 GLN GLN GLU GLU VAL SER ILE GLN ALA GLU ILE ILE ALA SEQRES 14 B 359 THR ASN ALA GLN ILE ASP LEU MET LYS GLN GLN ILE ALA SEQRES 15 B 359 ALA PHE LYS THR ALA ILE ALA ASN ALA GLN SER GLN ARG SEQRES 16 B 359 LYS LYS GLY ILE PHE GLU THR ILE PHE GLY VAL VAL LEU SEQRES 17 B 359 ALA PRO PHE THR LEU GLY GLY SER LEU ILE LEU ALA GLY SEQRES 18 B 359 PHE GLY VAL SER SER ILE VAL GLU ALA GLN SER GLU ILE SEQRES 19 B 359 SER SER LEU GLN SER ASP ILE GLN SER SER LEU ASN THR SEQRES 20 B 359 ILE ASN HIS ASP GLN GLN THR LEU SER GLN ASP GLN GLN SEQRES 21 B 359 GLN ILE ALA SER LEU ASN ALA LEU LEU LEU SER VAL ASP SEQRES 22 B 359 GLN VAL ASN ASN ASP CYS ALA ALA ILE SER ARG SER LEU SEQRES 23 B 359 ASP THR LEU GLN THR THR VAL LEU SER LEU TYR ASN GLU SEQRES 24 B 359 THR ASN ASN VAL VAL SER ASN LEU THR LYS ALA GLN ASP SEQRES 25 B 359 SER GLN ALA VAL ILE LEU GLU GLN VAL TRP TYR GLN SER SEQRES 26 B 359 ALA TYR ASN GLU TRP GLN ASP ILE LEU GLU VAL ALA SER SEQRES 27 B 359 THR LEU ASN ASN ALA GLN PRO GLN ILE THR LYS ALA GLN SEQRES 28 B 359 ILE LYS GLU ASN LEU TYR PHE GLU HET ACY A 401 4 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET K B 400 1 HET EDO B 401 4 HET CL B 402 1 HET FMT B 403 3 HET EDO B 404 4 HETNAM ACY ACETIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM K POTASSIUM ION HETNAM CL CHLORIDE ION HETNAM FMT FORMIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ACY C2 H4 O2 FORMUL 4 EDO 5(C2 H6 O2) FORMUL 7 K K 1+ FORMUL 9 CL CL 1- FORMUL 10 FMT C H2 O2 FORMUL 12 HOH *323(H2 O) HELIX 1 AA1 SER A 4 GLU A 32 1 29 HELIX 2 AA2 HIS A 42 SER A 64 1 23 HELIX 3 AA3 SER A 70 ARG A 101 1 32 HELIX 4 AA4 ASP A 103 THR A 116 1 14 HELIX 5 AA5 LEU A 117 GLU A 160 1 44 HELIX 6 AA6 ILE A 163 ALA A 191 1 29 HELIX 7 AA7 ALA A 230 GLN A 252 1 23 HELIX 8 AA8 SER A 256 SER A 264 1 9 HELIX 9 AA9 LEU A 265 LEU A 268 5 4 HELIX 10 AB1 LEU A 269 ALA A 310 1 42 HELIX 11 AB2 ASP A 312 ASN A 342 1 31 HELIX 12 AB3 SER B 4 GLU B 32 1 29 HELIX 13 AB4 TRP B 43 SER B 64 1 22 HELIX 14 AB5 SER B 70 ARG B 101 1 32 HELIX 15 AB6 ASP B 103 THR B 116 1 14 HELIX 16 AB7 LEU B 117 GLU B 160 1 44 HELIX 17 AB8 ILE B 163 ALA B 191 1 29 HELIX 18 AB9 GLN B 192 ARG B 195 5 4 HELIX 19 AC1 ALA B 230 GLN B 252 1 23 HELIX 20 AC2 SER B 256 SER B 264 1 9 HELIX 21 AC3 LEU B 265 ALA B 267 5 3 HELIX 22 AC4 LEU B 268 ALA B 310 1 43 HELIX 23 AC5 ASP B 312 LEU B 318 1 7 HELIX 24 AC6 GLU B 319 ALA B 343 1 25 SHEET 1 AA1 4 TYR A 34 ILE A 35 0 SHEET 2 AA1 4 SER A 216 VAL A 228 -1 O LEU A 219 N TYR A 34 SHEET 3 AA1 4 LYS A 197 PRO A 210 -1 N PHE A 204 O PHE A 222 SHEET 4 AA1 4 GLN A 346 ILE A 352 1 O ILE A 352 N GLY A 205 SHEET 1 AA2 4 TYR B 34 ILE B 35 0 SHEET 2 AA2 4 SER B 216 VAL B 228 -1 O LEU B 219 N TYR B 34 SHEET 3 AA2 4 LYS B 197 PRO B 210 -1 N PHE B 204 O PHE B 222 SHEET 4 AA2 4 GLN B 346 ILE B 352 1 O ILE B 352 N GLY B 205 LINK O GLN A 253 K K B 400 1555 1655 2.70 LINK O LEU A 255 K K B 400 1555 1655 2.76 LINK O GLN B 253 K K B 400 1555 1555 2.70 LINK O LEU B 255 K K B 400 1555 1555 2.73 SITE 1 AC1 3 ASN A 66 TYR A 131 GLY A 134 SITE 1 AC2 5 ILE A 35 ASP A 36 EDO A 404 LYS B 56 SITE 2 AC2 5 ARG B 59 SITE 1 AC3 5 PHE A 200 GLU A 201 THR A 202 SER A 226 SITE 2 AC3 5 HOH A 502 SITE 1 AC4 7 THR A 33 TYR A 34 ILE A 35 ASN A 52 SITE 2 AC4 7 GLN A 55 EDO A 402 ARG B 59 SITE 1 AC5 5 GLN A 253 LEU A 255 GLN A 260 GLN B 253 SITE 2 AC5 5 LEU B 255 SITE 1 AC6 7 GLY B 65 ASN B 66 LEU B 67 PHE B 69 SITE 2 AC6 7 SER B 70 ASN B 71 HOH B 583 SITE 1 AC7 1 THR B 339 SITE 1 AC8 4 PHE B 200 GLU B 201 THR B 202 SER B 226 SITE 1 AC9 6 VAL B 207 PRO B 210 ASN B 249 LYS B 353 SITE 2 AC9 6 GLU B 354 HOH B 545 CRYST1 59.209 45.134 143.950 90.00 100.16 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016889 0.000000 0.003026 0.00000 SCALE2 0.000000 0.022156 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007057 0.00000