HEADER OXIDOREDUCTASE 02-MAR-20 6W0S TITLE CRYSTAL STRUCTURE OF SUBSTRATE FREE CYTOCHROME P450 NASF5053 FROM TITLE 2 STREPTOMYCES SP. NRRL F-5053 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450-F5053; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. NRRL F-5053; SOURCE 3 ORGANISM_TAXID: 1463854; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BIOSYNTHETIC PROTEIN, CYTOCHROME P450, CYCLODIPEPTIDE, REGIO- KEYWDS 2 SELECITIVTY, STEREO-SELECTIVITY, PYRROLOINDOLINE ALKALOIDS, RADICAL KEYWDS 3 MEDIATED REACTION, F5053, STREPTOMYCES, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.LUO,X.JIA,C.SUN,X.QU,B.KOBE REVDAT 3 11-OCT-23 6W0S 1 REMARK REVDAT 2 23-DEC-20 6W0S 1 JRNL REVDAT 1 11-NOV-20 6W0S 0 JRNL AUTH C.SUN,Z.LUO,W.ZHANG,W.TIAN,H.PENG,Z.LIN,Z.DENG,B.KOBE,X.JIA, JRNL AUTH 2 X.QU JRNL TITL MOLECULAR BASIS OF REGIO- AND STEREO-SPECIFICITY IN JRNL TITL 2 BIOSYNTHESIS OF BACTERIAL HETERODIMERIC DIKETOPIPERAZINES. JRNL REF NAT COMMUN V. 11 6251 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 33288748 JRNL DOI 10.1038/S41467-020-20022-5 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 81067 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0600 - 5.2800 0.99 2621 131 0.2211 0.2671 REMARK 3 2 5.2800 - 4.1900 1.00 2614 131 0.1730 0.1912 REMARK 3 3 4.1900 - 3.6600 1.00 2621 133 0.1701 0.2172 REMARK 3 4 3.6600 - 3.3300 1.00 2567 142 0.1807 0.1754 REMARK 3 5 3.3300 - 3.0900 1.00 2601 117 0.1828 0.2389 REMARK 3 6 3.0900 - 2.9100 1.00 2580 142 0.1861 0.2149 REMARK 3 7 2.9100 - 2.7600 1.00 2560 136 0.1819 0.1879 REMARK 3 8 2.7600 - 2.6400 1.00 2526 144 0.1748 0.2071 REMARK 3 9 2.6400 - 2.5400 1.00 2615 140 0.1761 0.2307 REMARK 3 10 2.5400 - 2.4500 1.00 2551 136 0.1669 0.1930 REMARK 3 11 2.4500 - 2.3800 1.00 2561 157 0.1635 0.1725 REMARK 3 12 2.3800 - 2.3100 1.00 2557 144 0.1696 0.2272 REMARK 3 13 2.3100 - 2.2500 1.00 2586 121 0.1720 0.2714 REMARK 3 14 2.2500 - 2.1900 1.00 2559 146 0.1659 0.1918 REMARK 3 15 2.1900 - 2.1400 1.00 2552 135 0.1715 0.2420 REMARK 3 16 2.1400 - 2.1000 1.00 2545 137 0.1744 0.2313 REMARK 3 17 2.1000 - 2.0500 1.00 2560 135 0.1794 0.2079 REMARK 3 18 2.0500 - 2.0200 1.00 2571 127 0.1782 0.2380 REMARK 3 19 2.0200 - 1.9800 1.00 2557 153 0.1824 0.2372 REMARK 3 20 1.9800 - 1.9500 1.00 2580 141 0.1968 0.2351 REMARK 3 21 1.9500 - 1.9100 1.00 2550 118 0.1978 0.2412 REMARK 3 22 1.9100 - 1.8900 1.00 2558 146 0.1998 0.2615 REMARK 3 23 1.8900 - 1.8600 1.00 2572 132 0.2012 0.2433 REMARK 3 24 1.8600 - 1.8300 1.00 2546 131 0.2002 0.2379 REMARK 3 25 1.8300 - 1.8100 1.00 2579 158 0.2025 0.2200 REMARK 3 26 1.8100 - 1.7800 0.99 2502 166 0.2198 0.2339 REMARK 3 27 1.7800 - 1.7600 0.99 2511 132 0.2339 0.3023 REMARK 3 28 1.7600 - 1.7400 0.99 2577 126 0.2477 0.2369 REMARK 3 29 1.7400 - 1.7200 0.99 2548 135 0.2610 0.3075 REMARK 3 30 1.7200 - 1.7000 0.99 2507 141 0.2697 0.2666 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.179 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.487 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 6381 REMARK 3 ANGLE : 1.406 8707 REMARK 3 CHIRALITY : 0.071 943 REMARK 3 PLANARITY : 0.009 1151 REMARK 3 DIHEDRAL : 22.291 3741 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6W0S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247291. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81192 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 45.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.85300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 5WP2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM CHLORIDE, 20% W/V REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.66250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 792 O HOH B 825 1.99 REMARK 500 O HOH B 508 O HOH B 758 2.02 REMARK 500 O HOH B 775 O HOH B 852 2.03 REMARK 500 O HOH A 657 O HOH A 806 2.04 REMARK 500 O HOH A 767 O HOH A 774 2.06 REMARK 500 O HOH A 711 O HOH A 759 2.06 REMARK 500 O HOH A 524 O HOH A 744 2.07 REMARK 500 O HOH A 506 O HOH A 628 2.10 REMARK 500 O HOH A 714 O HOH A 807 2.10 REMARK 500 O HOH B 801 O HOH B 848 2.11 REMARK 500 O HOH A 652 O HOH A 760 2.12 REMARK 500 O HOH B 667 O HOH B 833 2.12 REMARK 500 O HOH B 826 O HOH B 836 2.12 REMARK 500 O HOH A 750 O HOH A 800 2.13 REMARK 500 O HOH B 869 O HOH B 870 2.14 REMARK 500 O HOH A 776 O HOH A 806 2.14 REMARK 500 O HOH A 676 O HOH A 793 2.15 REMARK 500 O HOH B 691 O HOH B 800 2.16 REMARK 500 O HOH A 791 O HOH A 867 2.17 REMARK 500 O HOH A 772 O HOH A 810 2.17 REMARK 500 O HOH B 611 O HOH B 813 2.18 REMARK 500 O HOH A 658 O HOH A 792 2.18 REMARK 500 O HOH B 781 O HOH B 809 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 791 O HOH B 796 1455 2.01 REMARK 500 O HOH B 828 O HOH B 842 2646 2.04 REMARK 500 O HOH A 759 O HOH A 851 1655 2.11 REMARK 500 O HOH A 711 O HOH A 851 1655 2.11 REMARK 500 O HOH A 834 O HOH A 845 2545 2.12 REMARK 500 O HOH A 812 O HOH A 856 2645 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 76 CD GLU B 76 OE1 -0.066 REMARK 500 GLU B 76 CD GLU B 76 OE2 -0.077 REMARK 500 GLU B 191 CD GLU B 191 OE1 -0.070 REMARK 500 HIS B 256 CE1 HIS B 256 NE2 -0.076 REMARK 500 GLU B 276 CD GLU B 276 OE1 -0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 85 52.94 -116.46 REMARK 500 PHE A 139 -59.42 -131.76 REMARK 500 LEU A 283 -67.04 -120.11 REMARK 500 PHE B 139 -58.24 -128.59 REMARK 500 LEU B 283 -62.35 -125.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 63 -14.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 878 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH B 869 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH B 870 DISTANCE = 6.83 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 409 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 348 SG REMARK 620 2 HEM A 409 NA 96.8 REMARK 620 3 HEM A 409 NB 90.1 88.5 REMARK 620 4 HEM A 409 NC 91.2 171.7 89.3 REMARK 620 5 HEM A 409 ND 97.7 89.8 172.1 91.3 REMARK 620 6 HOH A 525 O 176.6 85.9 87.9 86.0 84.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 406 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 348 SG REMARK 620 2 HEM B 406 NA 96.0 REMARK 620 3 HEM B 406 NB 90.1 86.9 REMARK 620 4 HEM B 406 NC 90.6 173.4 92.1 REMARK 620 5 HEM B 406 ND 96.5 91.5 173.3 88.8 REMARK 620 6 HOH B 593 O 176.0 85.4 86.2 88.0 87.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 594 O REMARK 620 2 HOH B 831 O 123.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 406 DBREF 6W0S A 1 398 PDB 6W0S 6W0S 1 398 DBREF 6W0S B 1 398 PDB 6W0S 6W0S 1 398 SEQRES 1 A 398 GLY SER THR LEU THR TYR PRO PHE HIS ASP TRP SER GLN SEQRES 2 A 398 GLU LEU SER PRO ARG TYR ALA GLN LEU ARG ALA SER ASP SEQRES 3 A 398 ALA PRO VAL CYS PRO VAL VAL SER GLU GLY THR GLY ASP SEQRES 4 A 398 PRO LEU TRP LEU VAL THR ARG TYR ALA THR ALA VAL LYS SEQRES 5 A 398 LEU LEU GLU ASP SER ARG PHE SER SER GLU ALA ALA GLN SEQRES 6 A 398 ALA SER GLY ALA PRO ARG GLN GLU PRO VAL GLU LEU ARG SEQRES 7 A 398 ALA PRO GLY THR ARG GLY ASP ALA ILE ALA MET LEU ARG SEQRES 8 A 398 GLU ALA GLY LEU ARG SER VAL LEU ALA ASP GLY LEU GLY SEQRES 9 A 398 PRO ARG ALA VAL ARG ARG HIS GLN GLY TRP ILE ASN ASP SEQRES 10 A 398 LEU ALA GLU THR LEU MET SER GLU LEU ALA SER ARG GLU SEQRES 11 A 398 GLY THR PHE ASP LEU ALA ALA ASP PHE VAL GLU PRO LEU SEQRES 12 A 398 SER SER ALA LEU VAL SER ARG THR LEU LEU GLY GLU LEU SEQRES 13 A 398 SER ALA ASP GLU ARG ASP LEU LEU ALA HIS CYS ALA ASP SEQRES 14 A 398 THR GLY LEU ARG PHE CYS GLY VAL THR HIS GLU GLU GLN SEQRES 15 A 398 VAL HIS ALA PHE THR GLN MET HIS GLU PHE PHE LEU GLU SEQRES 16 A 398 HIS ALA ARG ARG LEU ALA GLY THR PRO GLY GLU HIS LEU SEQRES 17 A 398 LEU LYS LEU ILE ALA GLU ALA PRO VAL ASP GLN GLY PRO SEQRES 18 A 398 LEU SER ASP GLU ALA LEU ALA GLU ALA GLY SER LEU LEU SEQRES 19 A 398 VAL VAL ALA GLY PHE PRO THR SER SER GLY PHE LEU CYS SEQRES 20 A 398 GLY ALA LEU LEU THR LEU LEU ARG HIS PRO ASP ALA VAL SEQRES 21 A 398 GLN GLU LEU HIS ALA HIS PRO GLU ARG VAL PRO SER ALA SEQRES 22 A 398 VAL GLU GLU LEU LEU ARG TYR THR PRO LEU SER THR GLY SEQRES 23 A 398 SER VAL LYS ARG MET ALA THR GLU ASP LEU GLU ILE ASP SEQRES 24 A 398 GLY VAL ARG ILE LYS ALA GLY GLU VAL VAL MET VAL SER SEQRES 25 A 398 LEU GLU ALA VAL ASN HIS ASP PRO ASP ALA PHE GLU ASP SEQRES 26 A 398 PRO ASP VAL PHE ARG PRO GLY ARG GLU GLY PRO MET HIS SEQRES 27 A 398 PHE GLY PHE GLY ARG GLY ARG HIS PHE CYS PRO GLY ASN SEQRES 28 A 398 ARG LEU ALA ARG CYS VAL ILE GLU ALA THR VAL ARG ALA SEQRES 29 A 398 VAL ALA ARG ARG PRO GLY LEU ARG LEU ALA VAL ALA PRO SEQRES 30 A 398 GLU GLU ILE SER TRP HIS GLU GLY LEU PHE PHE ARG ARG SEQRES 31 A 398 PRO ARG ALA ILE PRO ALA THR TRP SEQRES 1 B 398 GLY SER THR LEU THR TYR PRO PHE HIS ASP TRP SER GLN SEQRES 2 B 398 GLU LEU SER PRO ARG TYR ALA GLN LEU ARG ALA SER ASP SEQRES 3 B 398 ALA PRO VAL CYS PRO VAL VAL SER GLU GLY THR GLY ASP SEQRES 4 B 398 PRO LEU TRP LEU VAL THR ARG TYR ALA THR ALA VAL LYS SEQRES 5 B 398 LEU LEU GLU ASP SER ARG PHE SER SER GLU ALA ALA GLN SEQRES 6 B 398 ALA SER GLY ALA PRO ARG GLN GLU PRO VAL GLU LEU ARG SEQRES 7 B 398 ALA PRO GLY THR ARG GLY ASP ALA ILE ALA MET LEU ARG SEQRES 8 B 398 GLU ALA GLY LEU ARG SER VAL LEU ALA ASP GLY LEU GLY SEQRES 9 B 398 PRO ARG ALA VAL ARG ARG HIS GLN GLY TRP ILE ASN ASP SEQRES 10 B 398 LEU ALA GLU THR LEU MET SER GLU LEU ALA SER ARG GLU SEQRES 11 B 398 GLY THR PHE ASP LEU ALA ALA ASP PHE VAL GLU PRO LEU SEQRES 12 B 398 SER SER ALA LEU VAL SER ARG THR LEU LEU GLY GLU LEU SEQRES 13 B 398 SER ALA ASP GLU ARG ASP LEU LEU ALA HIS CYS ALA ASP SEQRES 14 B 398 THR GLY LEU ARG PHE CYS GLY VAL THR HIS GLU GLU GLN SEQRES 15 B 398 VAL HIS ALA PHE THR GLN MET HIS GLU PHE PHE LEU GLU SEQRES 16 B 398 HIS ALA ARG ARG LEU ALA GLY THR PRO GLY GLU HIS LEU SEQRES 17 B 398 LEU LYS LEU ILE ALA GLU ALA PRO VAL ASP GLN GLY PRO SEQRES 18 B 398 LEU SER ASP GLU ALA LEU ALA GLU ALA GLY SER LEU LEU SEQRES 19 B 398 VAL VAL ALA GLY PHE PRO THR SER SER GLY PHE LEU CYS SEQRES 20 B 398 GLY ALA LEU LEU THR LEU LEU ARG HIS PRO ASP ALA VAL SEQRES 21 B 398 GLN GLU LEU HIS ALA HIS PRO GLU ARG VAL PRO SER ALA SEQRES 22 B 398 VAL GLU GLU LEU LEU ARG TYR THR PRO LEU SER THR GLY SEQRES 23 B 398 SER VAL LYS ARG MET ALA THR GLU ASP LEU GLU ILE ASP SEQRES 24 B 398 GLY VAL ARG ILE LYS ALA GLY GLU VAL VAL MET VAL SER SEQRES 25 B 398 LEU GLU ALA VAL ASN HIS ASP PRO ASP ALA PHE GLU ASP SEQRES 26 B 398 PRO ASP VAL PHE ARG PRO GLY ARG GLU GLY PRO MET HIS SEQRES 27 B 398 PHE GLY PHE GLY ARG GLY ARG HIS PHE CYS PRO GLY ASN SEQRES 28 B 398 ARG LEU ALA ARG CYS VAL ILE GLU ALA THR VAL ARG ALA SEQRES 29 B 398 VAL ALA ARG ARG PRO GLY LEU ARG LEU ALA VAL ALA PRO SEQRES 30 B 398 GLU GLU ILE SER TRP HIS GLU GLY LEU PHE PHE ARG ARG SEQRES 31 B 398 PRO ARG ALA ILE PRO ALA THR TRP HET GOL A 401 14 HET BR A 402 1 HET BR A 403 1 HET CL A 404 1 HET CL A 405 1 HET CL A 406 1 HET CL A 407 1 HET NA A 408 1 HET HEM A 409 49 HET BR B 401 1 HET BR B 402 1 HET CL B 403 1 HET CL B 404 1 HET NA B 405 1 HET HEM B 406 50 HETNAM GOL GLYCEROL HETNAM BR BROMIDE ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN HEM HEME FORMUL 3 GOL C3 H8 O3 FORMUL 4 BR 4(BR 1-) FORMUL 6 CL 6(CL 1-) FORMUL 10 NA 2(NA 1+) FORMUL 11 HEM 2(C34 H32 FE N4 O4) FORMUL 18 HOH *748(H2 O) HELIX 1 AA1 SER A 16 ALA A 24 1 9 HELIX 2 AA2 ARG A 46 GLU A 55 1 10 HELIX 3 AA3 GLU A 62 ALA A 66 5 5 HELIX 4 AA4 ASP A 85 ALA A 93 1 9 HELIX 5 AA5 LEU A 95 GLY A 104 1 10 HELIX 6 AA6 GLY A 104 SER A 128 1 25 HELIX 7 AA7 LEU A 135 PHE A 139 1 5 HELIX 8 AA8 PHE A 139 LEU A 152 1 14 HELIX 9 AA9 SER A 157 LEU A 172 1 16 HELIX 10 AB1 THR A 178 GLY A 202 1 25 HELIX 11 AB2 HIS A 207 ALA A 215 1 9 HELIX 12 AB3 SER A 223 HIS A 256 1 34 HELIX 13 AB4 HIS A 256 HIS A 266 1 11 HELIX 14 AB5 ARG A 269 THR A 281 1 13 HELIX 15 AB6 SER A 312 HIS A 318 1 7 HELIX 16 AB7 ARG A 343 PHE A 347 5 5 HELIX 17 AB8 CYS A 348 PRO A 349 5 2 HELIX 18 AB9 GLY A 350 ARG A 367 1 18 HELIX 19 AC1 ALA A 376 ILE A 380 5 5 HELIX 20 AC2 SER B 16 ALA B 24 1 9 HELIX 21 AC3 ARG B 46 GLU B 55 1 10 HELIX 22 AC4 ASP B 85 ALA B 93 1 9 HELIX 23 AC5 LEU B 95 GLY B 104 1 10 HELIX 24 AC6 GLY B 104 SER B 128 1 25 HELIX 25 AC7 LEU B 135 PHE B 139 1 5 HELIX 26 AC8 PHE B 139 LEU B 152 1 14 HELIX 27 AC9 SER B 157 LEU B 172 1 16 HELIX 28 AD1 THR B 178 GLY B 202 1 25 HELIX 29 AD2 HIS B 207 ALA B 215 1 9 HELIX 30 AD3 SER B 223 HIS B 256 1 34 HELIX 31 AD4 HIS B 256 HIS B 266 1 11 HELIX 32 AD5 ARG B 269 THR B 281 1 13 HELIX 33 AD6 SER B 312 HIS B 318 1 7 HELIX 34 AD7 ARG B 343 PHE B 347 5 5 HELIX 35 AD8 CYS B 348 PRO B 349 5 2 HELIX 36 AD9 GLY B 350 ARG B 367 1 18 HELIX 37 AE1 ALA B 376 ILE B 380 5 5 SHEET 1 AA1 6 THR A 5 TYR A 6 0 SHEET 2 AA1 6 CYS A 30 SER A 34 1 O VAL A 33 N TYR A 6 SHEET 3 AA1 6 PRO A 40 VAL A 44 -1 O LEU A 41 N VAL A 32 SHEET 4 AA1 6 VAL A 308 VAL A 311 1 O MET A 310 N VAL A 44 SHEET 5 AA1 6 VAL A 288 ALA A 292 -1 N ARG A 290 O VAL A 309 SHEET 6 AA1 6 PHE A 59 SER A 60 -1 N SER A 60 O MET A 291 SHEET 1 AA2 3 PHE A 133 ASP A 134 0 SHEET 2 AA2 3 PRO A 395 THR A 397 -1 O ALA A 396 N PHE A 133 SHEET 3 AA2 3 ARG A 372 LEU A 373 -1 N ARG A 372 O THR A 397 SHEET 1 AA3 2 LEU A 296 ILE A 298 0 SHEET 2 AA3 2 VAL A 301 ILE A 303 -1 O ILE A 303 N LEU A 296 SHEET 1 AA4 6 THR B 5 TYR B 6 0 SHEET 2 AA4 6 CYS B 30 SER B 34 1 O VAL B 33 N TYR B 6 SHEET 3 AA4 6 PRO B 40 VAL B 44 -1 O LEU B 41 N VAL B 32 SHEET 4 AA4 6 VAL B 308 VAL B 311 1 O MET B 310 N VAL B 44 SHEET 5 AA4 6 VAL B 288 ALA B 292 -1 N ARG B 290 O VAL B 309 SHEET 6 AA4 6 PHE B 59 SER B 60 -1 N SER B 60 O MET B 291 SHEET 1 AA5 3 PHE B 133 ASP B 134 0 SHEET 2 AA5 3 PRO B 395 THR B 397 -1 O ALA B 396 N PHE B 133 SHEET 3 AA5 3 ARG B 372 LEU B 373 -1 N ARG B 372 O THR B 397 SHEET 1 AA6 2 LEU B 296 ILE B 298 0 SHEET 2 AA6 2 VAL B 301 ILE B 303 -1 O ILE B 303 N LEU B 296 LINK SG CYS A 348 FE HEM A 409 1555 1555 2.34 LINK NA NA A 408 O HOH A 766 1555 1655 2.99 LINK FE HEM A 409 O HOH A 525 1555 1555 2.28 LINK SG CYS B 348 FE HEM B 406 1555 1555 2.35 LINK NA NA B 405 O HOH B 594 1555 1555 2.95 LINK NA NA B 405 O HOH B 831 1555 1555 3.01 LINK FE HEM B 406 O HOH B 593 1555 1555 2.33 CISPEP 1 TYR A 6 PRO A 7 0 6.15 CISPEP 2 TYR B 6 PRO B 7 0 4.74 SITE 1 AC1 4 PHE A 388 HEM A 409 HOH A 525 HOH A 641 SITE 1 AC2 4 GLU A 324 ARG A 333 GLY A 335 HOH A 549 SITE 1 AC3 2 GLN A 13 HOH A 669 SITE 1 AC4 2 ARG A 352 CL A 407 SITE 1 AC5 2 ARG A 109 HIS A 184 SITE 1 AC6 1 ARG A 368 SITE 1 AC7 3 ARG A 91 LEU A 99 CL A 404 SITE 1 AC8 3 THR A 178 HIS A 179 HOH A 766 SITE 1 AC9 22 ARG A 91 LEU A 103 LEU A 152 ALA A 237 SITE 2 AC9 22 THR A 241 SER A 242 LEU A 283 VAL A 288 SITE 3 AC9 22 ARG A 290 LEU A 313 GLY A 340 PHE A 341 SITE 4 AC9 22 GLY A 342 HIS A 346 CYS A 348 PRO A 349 SITE 5 AC9 22 GLY A 350 GOL A 401 HOH A 525 HOH A 567 SITE 6 AC9 22 HOH A 595 HOH A 617 SITE 1 AD1 3 GLU B 324 ARG B 333 GLY B 335 SITE 1 AD2 2 GLN B 13 HOH B 733 SITE 1 AD3 3 ARG B 352 HOH B 749 HOH B 822 SITE 1 AD4 1 HIS B 184 SITE 1 AD5 2 HOH B 594 HOH B 831 SITE 1 AD6 23 ARG B 91 LEU B 103 LEU B 152 ALA B 237 SITE 2 AD6 23 GLY B 238 THR B 241 SER B 242 LEU B 283 SITE 3 AD6 23 VAL B 288 ARG B 290 LEU B 313 GLY B 340 SITE 4 AD6 23 PHE B 341 GLY B 342 HIS B 346 CYS B 348 SITE 5 AD6 23 PRO B 349 GLY B 350 HOH B 547 HOH B 583 SITE 6 AD6 23 HOH B 589 HOH B 593 HOH B 663 CRYST1 42.208 91.325 98.275 90.00 96.41 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023692 0.000000 0.002660 0.00000 SCALE2 0.000000 0.010950 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010239 0.00000