HEADER TRANSFERASE 03-MAR-20 6W14 TITLE CRYSTAL STRUCTURE OF TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE FROM TITLE 2 MYCOBACTERIUM SMEGMATIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MYSMA.00937.A.AE1; COMPND 5 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 6 EC: 2.1.1.228; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM SMEGMATIS (STRAIN ATCC 700084 SOURCE 3 / MC(2)155); SOURCE 4 ORGANISM_TAXID: 246196; SOURCE 5 STRAIN: ATCC 700084 / MC(2)155; SOURCE 6 GENE: TRMD, MSMEI_2377; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MYSMA.00937.A.AE1 KEYWDS SSGCID, TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE, TRANSFERASE, KEYWDS 2 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 18-OCT-23 6W14 1 REMARK REVDAT 1 06-MAY-20 6W14 0 JRNL AUTH D.M.DRANOW,M.J.BOLEJACK,J.A.ABENDROTH,D.D.LORIMER, JRNL AUTH 2 P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE JRNL TITL 2 FROM MYCOBACTERIUM SMEGMATIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1-3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 13934 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1406 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8900 - 4.3100 1.00 1404 137 0.1794 0.2377 REMARK 3 2 4.3100 - 3.4200 1.00 1281 151 0.1732 0.2449 REMARK 3 3 3.4200 - 2.9900 1.00 1283 127 0.2396 0.3056 REMARK 3 4 2.9900 - 2.7100 0.99 1231 155 0.2499 0.3121 REMARK 3 5 2.7100 - 2.5200 0.99 1217 146 0.2515 0.3366 REMARK 3 6 2.5200 - 2.3700 0.98 1216 145 0.2491 0.3016 REMARK 3 7 2.3700 - 2.2500 0.99 1199 148 0.2647 0.3466 REMARK 3 8 2.2500 - 2.1500 0.98 1238 127 0.2574 0.3285 REMARK 3 9 2.1500 - 2.0700 1.00 1217 130 0.2744 0.3589 REMARK 3 10 2.0700 - 2.0000 0.99 1242 140 0.2697 0.3040 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.254 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1584 REMARK 3 ANGLE : 0.788 2162 REMARK 3 CHIRALITY : 0.051 244 REMARK 3 PLANARITY : 0.006 284 REMARK 3 DIHEDRAL : 15.867 572 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3515 8.2724 9.5060 REMARK 3 T TENSOR REMARK 3 T11: 0.5656 T22: 0.3529 REMARK 3 T33: 0.3853 T12: -0.0495 REMARK 3 T13: -0.0802 T23: -0.0483 REMARK 3 L TENSOR REMARK 3 L11: 4.3795 L22: 4.7580 REMARK 3 L33: 7.9153 L12: -0.1871 REMARK 3 L13: -2.4396 L23: 3.6027 REMARK 3 S TENSOR REMARK 3 S11: 0.1256 S12: 0.0949 S13: 0.0720 REMARK 3 S21: -0.4382 S22: 0.0523 S23: 0.2100 REMARK 3 S31: -1.4067 S32: 0.6814 S33: -0.1958 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8499 1.7754 9.4270 REMARK 3 T TENSOR REMARK 3 T11: 0.3836 T22: 0.5305 REMARK 3 T33: 0.4493 T12: -0.0973 REMARK 3 T13: -0.0539 T23: -0.1031 REMARK 3 L TENSOR REMARK 3 L11: 3.2528 L22: 6.2781 REMARK 3 L33: 3.1723 L12: -4.0136 REMARK 3 L13: -1.5716 L23: 0.2167 REMARK 3 S TENSOR REMARK 3 S11: -0.3076 S12: -0.2944 S13: 0.1146 REMARK 3 S21: 0.2882 S22: 0.0644 S23: -0.4744 REMARK 3 S31: -0.0622 S32: 1.0434 S33: 0.0586 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0862 -7.7969 10.1311 REMARK 3 T TENSOR REMARK 3 T11: 0.3588 T22: 0.3683 REMARK 3 T33: 0.3590 T12: 0.0773 REMARK 3 T13: -0.0974 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 2.7292 L22: 5.1670 REMARK 3 L33: 4.3918 L12: -1.5025 REMARK 3 L13: -1.5642 L23: 2.5805 REMARK 3 S TENSOR REMARK 3 S11: -0.1027 S12: -0.3232 S13: 0.2711 REMARK 3 S21: 0.3681 S22: 0.5314 S23: -0.7905 REMARK 3 S31: 0.1654 S32: 0.8787 S33: -0.2711 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3670 -1.8587 10.8292 REMARK 3 T TENSOR REMARK 3 T11: 0.3625 T22: 0.2805 REMARK 3 T33: 0.3540 T12: -0.0547 REMARK 3 T13: 0.0299 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 2.6094 L22: 4.1539 REMARK 3 L33: 3.7829 L12: -0.8153 REMARK 3 L13: -0.7913 L23: 1.8079 REMARK 3 S TENSOR REMARK 3 S11: -0.2083 S12: -0.0590 S13: 0.0127 REMARK 3 S21: 0.3658 S22: 0.0182 S23: 0.6831 REMARK 3 S31: 0.2567 S32: -0.1590 S33: 0.2284 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0404 -6.8231 11.5404 REMARK 3 T TENSOR REMARK 3 T11: 0.4653 T22: 0.3131 REMARK 3 T33: 0.3304 T12: 0.0362 REMARK 3 T13: -0.1139 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 5.0153 L22: 6.9582 REMARK 3 L33: 3.0272 L12: -2.2316 REMARK 3 L13: 0.2815 L23: 1.4309 REMARK 3 S TENSOR REMARK 3 S11: -0.3021 S12: -0.2143 S13: -0.3330 REMARK 3 S21: 0.3049 S22: 0.5584 S23: -0.1881 REMARK 3 S31: 0.4057 S32: 0.5760 S33: -0.1946 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7390 0.1120 7.1549 REMARK 3 T TENSOR REMARK 3 T11: 0.3038 T22: 0.2345 REMARK 3 T33: 0.2735 T12: -0.0379 REMARK 3 T13: -0.0287 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 2.9790 L22: 3.4754 REMARK 3 L33: 3.8637 L12: -0.7589 REMARK 3 L13: -0.6533 L23: 2.0988 REMARK 3 S TENSOR REMARK 3 S11: 0.0334 S12: -0.1938 S13: 0.0018 REMARK 3 S21: 0.2575 S22: 0.1320 S23: 0.0823 REMARK 3 S31: 0.1732 S32: 0.0633 S33: -0.1307 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5813 7.3427 5.0761 REMARK 3 T TENSOR REMARK 3 T11: 0.6534 T22: 0.4814 REMARK 3 T33: 0.4196 T12: -0.0215 REMARK 3 T13: 0.0513 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 4.9938 L22: 0.2917 REMARK 3 L33: 2.2467 L12: 0.3612 REMARK 3 L13: 2.2616 L23: 0.7613 REMARK 3 S TENSOR REMARK 3 S11: 0.4210 S12: -0.4294 S13: -0.3211 REMARK 3 S21: 0.5743 S22: -0.1596 S23: 0.2248 REMARK 3 S31: -0.2367 S32: -0.1963 S33: -0.1276 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 180 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2900 21.3013 -8.9973 REMARK 3 T TENSOR REMARK 3 T11: 0.4920 T22: 0.6472 REMARK 3 T33: 0.4529 T12: 0.2497 REMARK 3 T13: -0.0439 T23: 0.0381 REMARK 3 L TENSOR REMARK 3 L11: 9.3255 L22: 9.7132 REMARK 3 L33: 5.6039 L12: 8.1824 REMARK 3 L13: -4.1121 L23: -6.7270 REMARK 3 S TENSOR REMARK 3 S11: 0.8646 S12: 0.5971 S13: 0.9887 REMARK 3 S21: -0.3505 S22: -0.5319 S23: 0.6381 REMARK 3 S31: -0.2641 S32: -0.0857 S33: -0.3670 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2687 4.3568 -2.2308 REMARK 3 T TENSOR REMARK 3 T11: 0.4779 T22: 0.5612 REMARK 3 T33: 0.4476 T12: -0.1277 REMARK 3 T13: -0.0282 T23: -0.0887 REMARK 3 L TENSOR REMARK 3 L11: 9.6175 L22: 8.9278 REMARK 3 L33: 2.9240 L12: -8.0837 REMARK 3 L13: -0.8151 L23: 1.4280 REMARK 3 S TENSOR REMARK 3 S11: 0.2541 S12: 0.4838 S13: -0.7729 REMARK 3 S21: -0.1932 S22: -0.4800 S23: 0.9536 REMARK 3 S31: 0.4750 S32: -0.5148 S33: 0.2673 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6W14 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247318. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13969 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 12.77 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.06 REMARK 200 R MERGE FOR SHELL (I) : 0.61700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 5ZHI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MYSMA.00937.A.AE1.PW38670 AT 19.05 REMARK 280 MG/ML MIXED 1:1 WITH MCSG1(D3): 30% (V/V) PEG-400, 0.1 M TRIS- REMARK 280 HCL. PH = 8.5, 0.2 M MGCL2. TRAY: 311556D3. PUCK: WDC6-11., PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.22000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.23000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.23000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.83000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.23000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.23000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.61000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.23000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.23000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 85.83000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.23000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.23000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.61000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.22000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 19 REMARK 465 LEU A 20 REMARK 465 PRO A 21 REMARK 465 GLY A 22 REMARK 465 LYS A 23 REMARK 465 ALA A 24 REMARK 465 ILE A 25 REMARK 465 ASP A 26 REMARK 465 ALA A 27 REMARK 465 ASP A 158 REMARK 465 VAL A 159 REMARK 465 LEU A 160 REMARK 465 GLY A 161 REMARK 465 ASN A 162 REMARK 465 PRO A 163 REMARK 465 ALA A 164 REMARK 465 SER A 165 REMARK 465 HIS A 166 REMARK 465 GLN A 167 REMARK 465 GLN A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 ALA A 226 REMARK 465 GLY A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 HIS A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 16 CG1 CG2 CD1 REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 VAL A 44 CG1 CG2 REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 ARG A 93 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 102 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 177 CG CD OE1 OE2 REMARK 470 GLU A 210 CG CD OE1 OE2 REMARK 470 GLN A 214 CG CD OE1 NE2 REMARK 470 GLU A 218 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 45 O HOH A 301 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 111 -133.94 61.77 REMARK 500 ALA A 123 -9.59 -59.44 REMARK 500 REMARK 500 REMARK: NULL DBREF 6W14 A 2 225 UNP I7FBD0 I7FBD0_MYCS2 2 225 SEQADV 6W14 MET A 0 UNP I7FBD0 INITIATING METHIONINE SEQADV 6W14 VAL A 1 UNP I7FBD0 EXPRESSION TAG SEQADV 6W14 ALA A 226 UNP I7FBD0 EXPRESSION TAG SEQADV 6W14 GLY A 227 UNP I7FBD0 EXPRESSION TAG SEQADV 6W14 HIS A 228 UNP I7FBD0 EXPRESSION TAG SEQADV 6W14 HIS A 229 UNP I7FBD0 EXPRESSION TAG SEQADV 6W14 HIS A 230 UNP I7FBD0 EXPRESSION TAG SEQADV 6W14 HIS A 231 UNP I7FBD0 EXPRESSION TAG SEQADV 6W14 HIS A 232 UNP I7FBD0 EXPRESSION TAG SEQADV 6W14 HIS A 233 UNP I7FBD0 EXPRESSION TAG SEQRES 1 A 234 MET VAL ARG ILE ASP VAL ILE SER ILE PHE PRO ALA TYR SEQRES 2 A 234 LEU ASP PRO ILE ARG GLN SER LEU PRO GLY LYS ALA ILE SEQRES 3 A 234 ASP ALA GLY ILE VAL SER VAL GLU VAL HIS ASP LEU ARG SEQRES 4 A 234 ASN TRP THR HIS ASP VAL HIS ARG SER VAL ASP ASP SER SEQRES 5 A 234 PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS ALA PRO SEQRES 6 A 234 VAL TRP GLY GLU ALA LEU ASP GLU ILE CYS SER GLU GLU SEQRES 7 A 234 THR LEU LEU VAL VAL PRO THR PRO ALA GLY ARG LEU PHE SEQRES 8 A 234 ASP GLN ARG THR ALA GLN ARG TRP SER THR GLU ARG HIS SEQRES 9 A 234 LEU VAL PHE ALA CYS GLY ARG TYR GLU GLY ILE ASP GLN SEQRES 10 A 234 ARG VAL VAL ASP ASP ALA ALA ARG ARG MET ARG VAL GLU SEQRES 11 A 234 GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY GLU SEQRES 12 A 234 ALA ALA THR LEU VAL MET VAL GLU ALA VAL VAL ARG LEU SEQRES 13 A 234 LEU PRO ASP VAL LEU GLY ASN PRO ALA SER HIS GLN GLN SEQRES 14 A 234 ASP SER HIS SER ASP GLY LEU LEU GLU GLY PRO SER TYR SEQRES 15 A 234 THR ARG PRO PRO SER TRP ARG GLY LEU ASP VAL PRO PRO SEQRES 16 A 234 VAL LEU LEU SER GLY ASP HIS ALA LYS VAL ALA ALA TRP SEQRES 17 A 234 ARG HIS GLU GLN ALA LEU GLN ARG THR ARG GLU ARG ARG SEQRES 18 A 234 PRO ASP LEU LEU ASP ALA GLY HIS HIS HIS HIS HIS HIS FORMUL 2 HOH *53(H2 O) HELIX 1 AA1 PHE A 9 GLN A 18 5 10 HELIX 2 AA2 ARG A 38 THR A 41 5 4 HELIX 3 AA3 LYS A 62 CYS A 74 1 13 HELIX 4 AA4 ASP A 91 THR A 100 1 10 HELIX 5 AA5 ASP A 115 ALA A 123 1 9 HELIX 6 AA6 GLY A 140 ARG A 154 1 15 HELIX 7 AA7 PRO A 193 SER A 198 1 6 HELIX 8 AA8 ASP A 200 ARG A 220 1 21 HELIX 9 AA9 PRO A 221 LEU A 224 5 4 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 VAL A 1 SER A 7 1 N VAL A 5 O HIS A 35 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O PHE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 127 N LEU A 80 SHEET 6 AA1 6 ARG A 88 LEU A 89 1 N ARG A 88 O SER A 132 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 186 TRP A 187 0 SHEET 2 AA3 2 LEU A 190 ASP A 191 -1 O LEU A 190 N TRP A 187 CISPEP 1 ARG A 183 PRO A 184 0 -1.87 CRYST1 58.460 58.460 114.440 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017106 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017106 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008738 0.00000