HEADER LYASE 04-MAR-20 6W1H TITLE CRYSTAL STRUCTURE OF THE HYDROXYGLUTARATE SYNTHASE IN COMPLEX WITH 2- TITLE 2 OXOADIPATE FROM PSEUDOMONAS PUTIDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROXYGLUTARATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 GENE: YDCJ, PP_5260; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DECARBOXYLASE, LYSINE CATABOLISM, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.H.PEREIRA,M.G.THOMPSON,J.M.BLAKE-HEDGES,J.D.KEASLING,P.D.ADAMS REVDAT 2 18-OCT-23 6W1H 1 REMARK REVDAT 1 24-JUN-20 6W1H 0 JRNL AUTH M.G.THOMPSON,J.M.BLAKE-HEDGES,J.H.PEREIRA,J.A.HANGASKY, JRNL AUTH 2 M.S.BELCHER,W.M.MOORE,J.F.BARAJAS,P.CRUZ-MORALES, JRNL AUTH 3 L.J.WASHINGTON,R.W.HAUSHALTER,C.B.EIBEN,Y.LIU,W.SKYRUD, JRNL AUTH 4 V.T.BENITES,T.P.BARNUM,E.E.K.BAIDOO,H.V.SCHELLER, JRNL AUTH 5 M.A.MARLETTA,P.M.SHIH,P.D.ADAMS,J.D.KEASLING JRNL TITL AN IRON (II) DEPENDENT OXYGENASE PERFORMS THE LAST MISSING JRNL TITL 2 STEP OF PLANT LYSINE CATABOLISM. JRNL REF NAT COMMUN V. 11 2931 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32523014 JRNL DOI 10.1038/S41467-020-16815-3 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 84228 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 4041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 72.0500 - 4.3600 1.00 3016 132 0.1744 0.2017 REMARK 3 2 4.3600 - 3.4600 1.00 2880 144 0.1504 0.1816 REMARK 3 3 3.4600 - 3.0200 1.00 2823 132 0.1548 0.1985 REMARK 3 4 3.0200 - 2.7500 1.00 2800 165 0.1582 0.1833 REMARK 3 5 2.7500 - 2.5500 1.00 2815 141 0.1452 0.1651 REMARK 3 6 2.5500 - 2.4000 1.00 2765 146 0.1368 0.1683 REMARK 3 7 2.4000 - 2.2800 1.00 2796 133 0.1315 0.1572 REMARK 3 8 2.2800 - 2.1800 1.00 2749 168 0.1319 0.1461 REMARK 3 9 2.1800 - 2.1000 1.00 2755 153 0.1395 0.1852 REMARK 3 10 2.1000 - 2.0200 1.00 2763 134 0.1368 0.1825 REMARK 3 11 2.0200 - 1.9600 1.00 2754 155 0.1480 0.1858 REMARK 3 12 1.9600 - 1.9000 1.00 2734 159 0.1505 0.1772 REMARK 3 13 1.9000 - 1.8500 1.00 2717 154 0.1520 0.2141 REMARK 3 14 1.8500 - 1.8100 1.00 2787 130 0.1551 0.1999 REMARK 3 15 1.8100 - 1.7700 1.00 2752 119 0.1595 0.1874 REMARK 3 16 1.7700 - 1.7300 1.00 2757 141 0.1589 0.2003 REMARK 3 17 1.7300 - 1.7000 1.00 2719 145 0.1647 0.2174 REMARK 3 18 1.7000 - 1.6600 1.00 2778 132 0.1668 0.2647 REMARK 3 19 1.6600 - 1.6300 1.00 2717 138 0.1684 0.2272 REMARK 3 20 1.6300 - 1.6100 1.00 2774 140 0.1779 0.2475 REMARK 3 21 1.6100 - 1.5800 1.00 2690 152 0.1757 0.2230 REMARK 3 22 1.5800 - 1.5600 1.00 2737 141 0.1739 0.2445 REMARK 3 23 1.5600 - 1.5300 1.00 2739 127 0.1827 0.2271 REMARK 3 24 1.5300 - 1.5100 1.00 2751 127 0.1922 0.2573 REMARK 3 25 1.5100 - 1.4900 1.00 2754 126 0.1983 0.2623 REMARK 3 26 1.4900 - 1.4700 1.00 2693 130 0.2111 0.2657 REMARK 3 27 1.4700 - 1.4500 1.00 2741 125 0.2215 0.2800 REMARK 3 28 1.4500 - 1.4400 0.99 2765 131 0.2347 0.3126 REMARK 3 29 1.4400 - 1.4200 0.98 2666 121 0.2738 0.3645 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.154 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.256 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3657 REMARK 3 ANGLE : 0.870 4968 REMARK 3 CHIRALITY : 0.225 549 REMARK 3 PLANARITY : 0.006 669 REMARK 3 DIHEDRAL : 20.521 1373 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6W1H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247486. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 593341 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 72.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2RJB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM FLUORIDE, 20 % PEG REMARK 280 3,350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.22100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.78850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.14200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.78850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.22100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.14200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ASP A 414 REMARK 465 ASP A 415 REMARK 465 ALA A 416 REMARK 465 GLN A 417 REMARK 465 ALA A 418 REMARK 465 GLU A 419 REMARK 465 TYR A 420 REMARK 465 GLY A 421 REMARK 465 SER A 422 REMARK 465 GLY A 462 REMARK 465 SER A 463 REMARK 465 MET A 464 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 400 H LEU A 412 1.55 REMARK 500 O HOH A 715 O HOH A 941 1.85 REMARK 500 O HOH A 715 O HOH A 1057 1.86 REMARK 500 O HOH A 974 O HOH A 1182 1.87 REMARK 500 O HOH A 1065 O HOH A 1190 1.88 REMARK 500 O HOH A 1153 O HOH A 1239 1.91 REMARK 500 O HOH A 1071 O HOH A 1178 1.92 REMARK 500 O HOH A 918 O HOH A 969 1.92 REMARK 500 O HOH A 1076 O HOH A 1174 1.93 REMARK 500 O HOH A 969 O HOH A 1140 1.95 REMARK 500 O HOH A 1018 O HOH A 1048 1.99 REMARK 500 O HOH A 828 O HOH A 934 2.01 REMARK 500 O HOH A 727 O HOH A 766 2.01 REMARK 500 O HOH A 1127 O HOH A 1246 2.03 REMARK 500 O HOH A 704 O HOH A 814 2.06 REMARK 500 O HOH A 907 O HOH A 983 2.07 REMARK 500 O HOH A 818 O HOH A 1124 2.10 REMARK 500 O HOH A 1100 O HOH A 1168 2.12 REMARK 500 O HOH A 990 O HOH A 1213 2.13 REMARK 500 O HOH A 649 O HOH A 766 2.13 REMARK 500 O HOH A 788 O HOH A 1187 2.14 REMARK 500 O HOH A 1044 O HOH A 1223 2.16 REMARK 500 O HOH A 918 O HOH A 1140 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1243 O HOH A 1250 2664 1.72 REMARK 500 O HOH A 627 O HOH A 649 2565 2.06 REMARK 500 O HOH A 766 O HOH A 902 2564 2.18 REMARK 500 O HOH A 723 O HOH A 1015 1655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 263 -124.04 52.14 REMARK 500 GLN A 281 72.00 -119.91 REMARK 500 ASP A 398 -152.27 -110.19 REMARK 500 ASN A 411 114.19 71.15 REMARK 500 LEU A 412 -150.30 -159.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1263 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A1264 DISTANCE = 5.93 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 500 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 70 NE2 REMARK 620 2 HIS A 226 NE2 99.3 REMARK 620 3 GLU A 294 OE1 87.7 90.9 REMARK 620 4 OOG A 501 O3 94.2 164.1 98.1 REMARK 620 5 OOG A 501 O5 102.5 90.0 169.5 78.8 REMARK 620 6 HOH A 612 O 174.6 85.2 89.3 81.8 80.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OOG A 501 DBREF 6W1H A 1 464 UNP Q88CC1 Q88CC1_PSEPK 1 464 SEQRES 1 A 464 MET PRO ALA ASN ASP PHE VAL SER PRO ASP SER ILE ARG SEQRES 2 A 464 ALA GLN PHE SER ALA ALA MET SER LEU MET TYR LYS GLN SEQRES 3 A 464 GLU VAL PRO LEU TYR GLY THR LEU LEU GLU LEU VAL SER SEQRES 4 A 464 GLU ILE ASN GLN GLN VAL MET ALA GLN GLN PRO GLU VAL SEQRES 5 A 464 ALA GLU ALA LEU ARG TRP THR GLY GLU ILE GLU ARG LEU SEQRES 6 A 464 ASP GLN GLU ARG HIS GLY ALA ILE ARG VAL GLY THR ALA SEQRES 7 A 464 GLU GLU LEU ALA THR ILE ALA ARG LEU PHE ALA VAL MET SEQRES 8 A 464 GLY MET GLN PRO VAL GLY TYR TYR ASP LEU SER SER ALA SEQRES 9 A 464 GLY VAL PRO VAL HIS SER THR ALA PHE ARG ALA VAL HIS SEQRES 10 A 464 GLU GLN SER LEU HIS VAL SER PRO PHE ARG VAL PHE THR SEQRES 11 A 464 SER LEU LEU ARG LEU GLU LEU ILE ASP ASN PRO GLN LEU SEQRES 12 A 464 ARG GLU LEU ALA GLN SER ILE LEU ALA LYS ARG GLN ILE SEQRES 13 A 464 PHE THR SER ARG ALA LEU GLU LEU ILE ALA GLN CYS GLU SEQRES 14 A 464 ARG GLU GLY GLY LEU ASP ALA ALA ASP ALA GLU THR PHE SEQRES 15 A 464 VAL GLN GLU ALA LEU HIS THR PHE ARG TRP HIS GLN ASP SEQRES 16 A 464 ALA THR VAL THR ALA GLU GLN TYR GLN GLN LEU HIS ASP SEQRES 17 A 464 GLN HIS ARG LEU ILE ALA ASP VAL VAL ALA PHE LYS GLY SEQRES 18 A 464 PRO HIS ILE ASN HIS LEU THR PRO ARG THR LEU ASP ILE SEQRES 19 A 464 ASP ALA ILE GLN LEU GLY MET PRO ALA LYS GLY ILE PRO SEQRES 20 A 464 PRO LYS ALA VAL VAL GLU GLY PRO PRO THR ARG ARG HIS SEQRES 21 A 464 PRO ILE LEU LEU ARG GLN THR SER PHE LYS ALA LEU GLN SEQRES 22 A 464 GLU THR VAL ALA PHE ARG ASP GLN GLN GLY ARG GLU GLY SEQRES 23 A 464 SER HIS THR ALA ARG PHE GLY GLU ILE GLU GLN ARG GLY SEQRES 24 A 464 ALA ALA LEU THR PRO LYS GLY ARG GLN LEU TYR ASP LYS SEQRES 25 A 464 LEU LEU ASP ALA THR ARG VAL ALA LEU GLY GLY ALA PRO SEQRES 26 A 464 ALA GLU ALA ASN ALA GLU ARG TYR MET ALA LEU LEU GLN SEQRES 27 A 464 ALA ASN PHE ALA GLU PHE PRO ASP ASP LEU ALA GLN MET SEQRES 28 A 464 ARG GLU GLN GLY LEU ALA TYR PHE ARG TYR PHE ALA THR SEQRES 29 A 464 GLU LYS GLY LEU ALA ALA ARG ASP GLN GLU GLY ARG PRO SEQRES 30 A 464 THR THR LEU GLN GLY LEU ILE ASP ALA GLY HIS VAL HIS SEQRES 31 A 464 PHE GLU ALA LEU VAL TYR GLU ASP PHE LEU PRO VAL SER SEQRES 32 A 464 ALA ALA GLY ILE PHE GLN SER ASN LEU GLY ASP ASP ALA SEQRES 33 A 464 GLN ALA GLU TYR GLY SER ASN ALA ASN ARG GLU ALA PHE SEQRES 34 A 464 GLU ALA ALA LEU GLY LEU GLN VAL GLN ASP GLU LEU ALA SEQRES 35 A 464 LEU TYR ALA GLN SER GLU ARG ARG SER LEU GLN ALA CYS SEQRES 36 A 464 ALA GLN ALA LEU ASN LEU GLY SER MET HET NI A 500 1 HET OOG A 501 19 HETNAM NI NICKEL (II) ION HETNAM OOG 2-OXOADIPIC ACID FORMUL 2 NI NI 2+ FORMUL 3 OOG C6 H8 O5 FORMUL 4 HOH *664(H2 O) HELIX 1 AA1 SER A 8 VAL A 28 1 21 HELIX 2 AA2 VAL A 28 GLN A 49 1 22 HELIX 3 AA3 GLN A 49 GLY A 60 1 12 HELIX 4 AA4 GLY A 60 LEU A 65 1 6 HELIX 5 AA5 THR A 77 MET A 91 1 15 HELIX 6 AA6 SER A 102 GLY A 105 5 4 HELIX 7 AA7 HIS A 117 SER A 124 1 8 HELIX 8 AA8 LEU A 135 ILE A 138 5 4 HELIX 9 AA9 ASN A 140 ARG A 154 1 15 HELIX 10 AB1 THR A 158 GLY A 172 1 15 HELIX 11 AB2 ASP A 175 THR A 189 1 15 HELIX 12 AB3 THR A 199 HIS A 210 1 12 HELIX 13 AB4 HIS A 210 ALA A 218 1 9 HELIX 14 AB5 ASP A 233 MET A 241 1 9 HELIX 15 AB6 PRO A 242 GLY A 245 5 4 HELIX 16 AB7 THR A 303 GLY A 322 1 20 HELIX 17 AB8 ALA A 326 ALA A 328 5 3 HELIX 18 AB9 ASN A 329 PHE A 341 1 13 HELIX 19 AC1 ALA A 342 PHE A 344 5 3 HELIX 20 AC2 ASP A 347 GLN A 354 1 8 HELIX 21 AC3 THR A 364 ALA A 370 1 7 HELIX 22 AC4 THR A 379 ALA A 386 1 8 HELIX 23 AC5 ALA A 424 GLY A 434 1 11 HELIX 24 AC6 ASP A 439 LEU A 459 1 21 SHEET 1 AA1 5 GLN A 94 ASP A 100 0 SHEET 2 AA1 5 VAL A 108 ARG A 114 -1 O SER A 110 N TYR A 99 SHEET 3 AA1 5 ARG A 127 LEU A 133 -1 O THR A 130 N THR A 111 SHEET 4 AA1 5 ARG A 69 VAL A 75 1 N VAL A 75 O SER A 131 SHEET 5 AA1 5 HIS A 226 PRO A 229 -1 O THR A 228 N HIS A 70 SHEET 1 AA2 2 LEU A 264 VAL A 276 0 SHEET 2 AA2 2 SER A 287 ARG A 298 -1 O THR A 289 N GLU A 274 SHEET 1 AA3 2 PHE A 359 ALA A 363 0 SHEET 2 AA3 2 VAL A 389 ALA A 393 -1 O HIS A 390 N PHE A 362 LINK NE2 HIS A 70 NI NI A 500 1555 1555 2.21 LINK NE2 HIS A 226 NI NI A 500 1555 1555 2.06 LINK OE1 GLU A 294 NI NI A 500 1555 1555 2.03 LINK NI NI A 500 O3 OOG A 501 1555 1555 2.05 LINK NI NI A 500 O5 OOG A 501 1555 1555 2.13 LINK NI NI A 500 O HOH A 612 1555 1555 2.44 CISPEP 1 LEU A 400 PRO A 401 0 -4.98 SITE 1 AC1 5 HIS A 70 HIS A 226 GLU A 294 OOG A 501 SITE 2 AC1 5 HOH A 612 SITE 1 AC2 16 HIS A 70 ALA A 72 ARG A 74 PHE A 129 SITE 2 AC2 16 HIS A 226 GLU A 294 PHE A 399 PRO A 401 SITE 3 AC2 16 VAL A 402 SER A 403 NI A 500 HOH A 612 SITE 4 AC2 16 HOH A 671 HOH A 672 HOH A 792 HOH A 871 CRYST1 42.442 100.284 103.577 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023562 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009972 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009655 0.00000