HEADER MEMBRANE PROTEIN 04-MAR-20 6W25 TITLE CRYSTAL STRUCTURE OF THE MELANOCORTIN-4 RECEPTOR (MC4R) IN COMPLEX TITLE 2 WITH SHU9119 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MELANOCORTIN RECEPTOR 4,GLGA GLYCOGEN SYNTHASE,MELANOCORTIN COMPND 3 RECEPTOR 4; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: MC4-R,GLYCOGEN SYNTHASE,MC4-R; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SHU9119; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, PYROCOCCUS ABYSSI; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 272844; SOURCE 5 STRAIN: GE5 / ORSAY; SOURCE 6 GENE: MC4R, PAB2292; SOURCE 7 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630 KEYWDS MELANOCORTIN-4 RECEPTOR, CA++ COFACTOR, SHU9119, GPCR, PGS FUSION, KEYWDS 2 MEMBRANE PROTEIN, LCP EXPDTA X-RAY DIFFRACTION AUTHOR J.YU,L.E.GIMENEZ,C.C.HERNANDEZ,Y.WU,A.H.WEIN,G.W.HAN,K.MCCLARY, AUTHOR 2 S.R.MITTAL,K.BURDSALL,B.STAUCH,L.WU,S.N.STEVENS,A.PEISLEY, AUTHOR 3 S.Y.WILLIAMS,V.CHEN,G.L.MILLHAUSER,S.ZHAO,R.D.CONE,R.C.STEVENS REVDAT 5 15-NOV-23 6W25 1 LINK REVDAT 4 18-OCT-23 6W25 1 REMARK REVDAT 3 09-SEP-20 6W25 1 REMARK DBREF LINK SITE REVDAT 3 2 1 ATOM REVDAT 2 06-MAY-20 6W25 1 JRNL REMARK REVDAT 1 29-APR-20 6W25 0 JRNL AUTH J.YU,L.E.GIMENEZ,C.C.HERNANDEZ,Y.WU,A.H.WEIN,G.W.HAN, JRNL AUTH 2 K.MCCLARY,S.R.MITTAL,K.BURDSALL,B.STAUCH,L.WU,S.N.STEVENS, JRNL AUTH 3 A.PEISLEY,S.Y.WILLIAMS,V.CHEN,G.L.MILLHAUSER,S.ZHAO, JRNL AUTH 4 R.D.CONE,R.C.STEVENS JRNL TITL DETERMINATION OF THE MELANOCORTIN-4 RECEPTOR STRUCTURE JRNL TITL 2 IDENTIFIES CA2+AS A COFACTOR FOR LIGAND BINDING. JRNL REF SCIENCE V. 368 428 2020 JRNL REFN ESSN 1095-9203 JRNL PMID 32327598 JRNL DOI 10.1126/SCIENCE.AAZ8995 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 16759 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 815 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.94 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3004 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2790 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2854 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.99 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 150 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3697 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 21 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 18.02050 REMARK 3 B22 (A**2) : -20.49250 REMARK 3 B33 (A**2) : 2.47200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.64380 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.000 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.916 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.330 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 1.027 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.339 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.878 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3868 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5208 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1786 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 64 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 567 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3868 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 519 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4965 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.10 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|43 - A|320, A|2000 - A|2008 } REMARK 3 ORIGIN FOR THE GROUP (A): 152.6549 4.8245 108.6687 REMARK 3 T TENSOR REMARK 3 T11: -0.1602 T22: -0.0653 REMARK 3 T33: -0.1144 T12: -0.0360 REMARK 3 T13: -0.0081 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 1.9152 L22: 1.1073 REMARK 3 L33: 1.8296 L12: 0.4890 REMARK 3 L13: 0.3209 L23: -0.2403 REMARK 3 S TENSOR REMARK 3 S11: -0.0798 S12: 0.4999 S13: -0.0887 REMARK 3 S21: -0.0928 S22: 0.0892 S23: -0.0107 REMARK 3 S31: 0.1084 S32: 0.0938 S33: -0.0093 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|1001 - A|1196 } REMARK 3 ORIGIN FOR THE GROUP (A): 181.2486 -3.9922 144.6664 REMARK 3 T TENSOR REMARK 3 T11: -0.2210 T22: -0.1028 REMARK 3 T33: -0.0549 T12: 0.0266 REMARK 3 T13: 0.0028 T23: 0.0570 REMARK 3 L TENSOR REMARK 3 L11: 4.8909 L22: 2.0427 REMARK 3 L33: 2.2195 L12: -0.4961 REMARK 3 L13: -0.3546 L23: -0.2423 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: -0.3879 S13: -0.3374 REMARK 3 S21: 0.1698 S22: 0.1061 S23: -0.0427 REMARK 3 S31: 0.1467 S32: 0.2669 S33: -0.0672 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6W25 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247500. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16761 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 43.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.00 REMARK 200 R MERGE (I) : 0.23400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 3.30200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.960 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB 3EML REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG 400, 100 MM BIS-TRIS PROPANE REMARK 280 BUFFER, AND 50 MM CACL2 2H2O, PH 7.9, LIPIDIC CUBIC PHASE, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 81.95500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.24500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 81.95500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.24500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 LYS A -10 REMARK 465 THR A -9 REMARK 465 ILE A -8 REMARK 465 ILE A -7 REMARK 465 ALA A -6 REMARK 465 LEU A -5 REMARK 465 SER A -4 REMARK 465 TYR A -3 REMARK 465 ILE A -2 REMARK 465 PHE A -1 REMARK 465 CYS A 0 REMARK 465 LEU A 1 REMARK 465 VAL A 2 REMARK 465 PHE A 3 REMARK 465 ALA A 4 REMARK 465 ASP A 5 REMARK 465 TYR A 6 REMARK 465 LYS A 7 REMARK 465 ASP A 8 REMARK 465 ASP A 9 REMARK 465 ASP A 10 REMARK 465 ASP A 11 REMARK 465 ALA A 12 REMARK 465 GLY A 13 REMARK 465 ARG A 14 REMARK 465 ALA A 15 REMARK 465 TRP A 16 REMARK 465 ASN A 17 REMARK 465 ARG A 18 REMARK 465 SER A 19 REMARK 465 SER A 20 REMARK 465 TYR A 21 REMARK 465 ARG A 22 REMARK 465 LEU A 23 REMARK 465 HIS A 24 REMARK 465 SER A 25 REMARK 465 ASN A 26 REMARK 465 ALA A 27 REMARK 465 SER A 28 REMARK 465 GLU A 29 REMARK 465 SER A 30 REMARK 465 LEU A 31 REMARK 465 GLY A 32 REMARK 465 LYS A 33 REMARK 465 GLY A 34 REMARK 465 TYR A 35 REMARK 465 SER A 36 REMARK 465 ASP A 37 REMARK 465 GLY A 38 REMARK 465 GLY A 39 REMARK 465 CYS A 40 REMARK 465 TYR A 41 REMARK 465 GLU A 42 REMARK 465 ASP A 111 REMARK 465 THR A 112 REMARK 465 PRO A 2009 REMARK 465 HIS A 2010 REMARK 465 HIS A 2011 REMARK 465 HIS A 2012 REMARK 465 HIS A 2013 REMARK 465 HIS A 2014 REMARK 465 HIS A 2015 REMARK 465 HIS A 2016 REMARK 465 HIS A 2017 REMARK 465 HIS A 2018 REMARK 465 HIS A 2019 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 44 CG CD1 CD2 REMARK 470 LYS A 71 CG CD CE NZ REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 GLN A 115 CG CD OE1 NE2 REMARK 470 LYS A1062 CG CD CE NZ REMARK 470 LYS A1159 NZ REMARK 470 ARG A 236 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 237 CG CD OE1 NE2 REMARK 470 TYR A 320 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A2000 CG CD OE1 OE2 REMARK 470 PHE A2001 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A2003 CG CD OE1 OE2 REMARK 470 VAL A2004 CG1 CG2 REMARK 470 LEU A2005 CG CD1 CD2 REMARK 470 ASP B 2 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG ASP B 2 NZ LYS B 7 1.34 REMARK 500 OD1 ASP B 2 NZ LYS B 7 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 76 59.98 -90.16 REMARK 500 GLN A 115 -138.76 54.62 REMARK 500 TYR A 153 55.70 -118.30 REMARK 500 TYR A 187 40.46 -103.82 REMARK 500 GLN A1045 -73.02 -126.00 REMARK 500 PRO A1118 37.80 -89.91 REMARK 500 CYS A 271 52.03 -145.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLA A 2102 REMARK 610 OLA A 2103 REMARK 610 OLA A 2104 REMARK 610 OLA A 2105 REMARK 610 OLA A 2106 REMARK 610 OLA A 2107 REMARK 610 OLA A 2108 REMARK 610 OLA A 2109 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 100 OE2 REMARK 620 2 ASP A 122 OD1 94.2 REMARK 620 3 ASP A 126 OD1 75.7 108.8 REMARK 620 4 ASP A 126 OD2 115.4 79.2 48.3 REMARK 620 5 ASP B 2 O 85.6 94.1 151.2 158.2 REMARK 620 6 4J2 B 4 O 107.0 158.7 75.7 89.7 89.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 2102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 2103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 2104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 2105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 2106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 2107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 2108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 2109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues ACE B 1 and NLE B 2 DBREF 6W25 A 16 222 UNP P32245 MC4R_HUMAN 16 222 DBREF 6W25 A 1001 1196 UNP Q9V2J8 Q9V2J8_PYRAB 218 413 DBREF 6W25 A 236 320 UNP P32245 MC4R_HUMAN 236 320 DBREF 6W25 B 0 8 PDB 6W25 6W25 0 8 SEQADV 6W25 MET A -11 UNP P32245 INITIATING METHIONINE SEQADV 6W25 LYS A -10 UNP P32245 EXPRESSION TAG SEQADV 6W25 THR A -9 UNP P32245 EXPRESSION TAG SEQADV 6W25 ILE A -8 UNP P32245 EXPRESSION TAG SEQADV 6W25 ILE A -7 UNP P32245 EXPRESSION TAG SEQADV 6W25 ALA A -6 UNP P32245 EXPRESSION TAG SEQADV 6W25 LEU A -5 UNP P32245 EXPRESSION TAG SEQADV 6W25 SER A -4 UNP P32245 EXPRESSION TAG SEQADV 6W25 TYR A -3 UNP P32245 EXPRESSION TAG SEQADV 6W25 ILE A -2 UNP P32245 EXPRESSION TAG SEQADV 6W25 PHE A -1 UNP P32245 EXPRESSION TAG SEQADV 6W25 CYS A 0 UNP P32245 EXPRESSION TAG SEQADV 6W25 LEU A 1 UNP P32245 EXPRESSION TAG SEQADV 6W25 VAL A 2 UNP P32245 EXPRESSION TAG SEQADV 6W25 PHE A 3 UNP P32245 EXPRESSION TAG SEQADV 6W25 ALA A 4 UNP P32245 EXPRESSION TAG SEQADV 6W25 ASP A 5 UNP P32245 EXPRESSION TAG SEQADV 6W25 TYR A 6 UNP P32245 EXPRESSION TAG SEQADV 6W25 LYS A 7 UNP P32245 EXPRESSION TAG SEQADV 6W25 ASP A 8 UNP P32245 EXPRESSION TAG SEQADV 6W25 ASP A 9 UNP P32245 EXPRESSION TAG SEQADV 6W25 ASP A 10 UNP P32245 EXPRESSION TAG SEQADV 6W25 ASP A 11 UNP P32245 EXPRESSION TAG SEQADV 6W25 ALA A 12 UNP P32245 EXPRESSION TAG SEQADV 6W25 GLY A 13 UNP P32245 EXPRESSION TAG SEQADV 6W25 ARG A 14 UNP P32245 EXPRESSION TAG SEQADV 6W25 ALA A 15 UNP P32245 EXPRESSION TAG SEQADV 6W25 VAL A 49 UNP P32245 GLU 49 ENGINEERED MUTATION SEQADV 6W25 LEU A 97 UNP P32245 ASN 97 ENGINEERED MUTATION SEQADV 6W25 PHE A 99 UNP P32245 SER 99 ENGINEERED MUTATION SEQADV 6W25 ALA A 131 UNP P32245 SER 131 ENGINEERED MUTATION SEQADV 6W25 ASN A 298 UNP P32245 ASP 298 ENGINEERED MUTATION SEQADV 6W25 GLU A 2000 UNP P32245 EXPRESSION TAG SEQADV 6W25 PHE A 2001 UNP P32245 EXPRESSION TAG SEQADV 6W25 LEU A 2002 UNP P32245 EXPRESSION TAG SEQADV 6W25 GLU A 2003 UNP P32245 EXPRESSION TAG SEQADV 6W25 VAL A 2004 UNP P32245 EXPRESSION TAG SEQADV 6W25 LEU A 2005 UNP P32245 EXPRESSION TAG SEQADV 6W25 PHE A 2006 UNP P32245 EXPRESSION TAG SEQADV 6W25 GLN A 2007 UNP P32245 EXPRESSION TAG SEQADV 6W25 GLY A 2008 UNP P32245 EXPRESSION TAG SEQADV 6W25 PRO A 2009 UNP P32245 EXPRESSION TAG SEQADV 6W25 HIS A 2010 UNP P32245 EXPRESSION TAG SEQADV 6W25 HIS A 2011 UNP P32245 EXPRESSION TAG SEQADV 6W25 HIS A 2012 UNP P32245 EXPRESSION TAG SEQADV 6W25 HIS A 2013 UNP P32245 EXPRESSION TAG SEQADV 6W25 HIS A 2014 UNP P32245 EXPRESSION TAG SEQADV 6W25 HIS A 2015 UNP P32245 EXPRESSION TAG SEQADV 6W25 HIS A 2016 UNP P32245 EXPRESSION TAG SEQADV 6W25 HIS A 2017 UNP P32245 EXPRESSION TAG SEQADV 6W25 HIS A 2018 UNP P32245 EXPRESSION TAG SEQADV 6W25 HIS A 2019 UNP P32245 EXPRESSION TAG SEQRES 1 A 535 MET LYS THR ILE ILE ALA LEU SER TYR ILE PHE CYS LEU SEQRES 2 A 535 VAL PHE ALA ASP TYR LYS ASP ASP ASP ASP ALA GLY ARG SEQRES 3 A 535 ALA TRP ASN ARG SER SER TYR ARG LEU HIS SER ASN ALA SEQRES 4 A 535 SER GLU SER LEU GLY LYS GLY TYR SER ASP GLY GLY CYS SEQRES 5 A 535 TYR GLU GLN LEU PHE VAL SER PRO VAL VAL PHE VAL THR SEQRES 6 A 535 LEU GLY VAL ILE SER LEU LEU GLU ASN ILE LEU VAL ILE SEQRES 7 A 535 VAL ALA ILE ALA LYS ASN LYS ASN LEU HIS SER PRO MET SEQRES 8 A 535 TYR PHE PHE ILE CYS SER LEU ALA VAL ALA ASP MET LEU SEQRES 9 A 535 VAL SER VAL SER LEU GLY PHE GLU THR ILE VAL ILE THR SEQRES 10 A 535 LEU LEU ASN SER THR ASP THR ASP ALA GLN SER PHE THR SEQRES 11 A 535 VAL ASN ILE ASP ASN VAL ILE ASP SER VAL ILE CYS ALA SEQRES 12 A 535 SER LEU LEU ALA SER ILE CYS SER LEU LEU SER ILE ALA SEQRES 13 A 535 VAL ASP ARG TYR PHE THR ILE PHE TYR ALA LEU GLN TYR SEQRES 14 A 535 HIS ASN ILE MET THR VAL LYS ARG VAL GLY ILE ILE ILE SEQRES 15 A 535 SER CYS ILE TRP ALA ALA CYS THR VAL SER GLY ILE LEU SEQRES 16 A 535 PHE ILE ILE TYR SER ASP SER SER ALA VAL ILE ILE CYS SEQRES 17 A 535 LEU ILE THR MET PHE PHE THR MET LEU ALA LEU MET ALA SEQRES 18 A 535 SER LEU TYR VAL HIS MET PHE LEU MET ALA ARG LEU HIS SEQRES 19 A 535 GLY ILE ASP YCM SER PHE TRP ASN GLU SER TYR LEU THR SEQRES 20 A 535 GLY SER ARG ASP GLU ARG LYS LYS SER LEU LEU SER LYS SEQRES 21 A 535 PHE GLY MET ASP GLU GLY VAL THR PHE MET PHE ILE GLY SEQRES 22 A 535 ARG PHE ASP ARG GLY GLN LYS GLY VAL ASP VAL LEU LEU SEQRES 23 A 535 LYS ALA ILE GLU ILE LEU SER SER LYS LYS GLU PHE GLN SEQRES 24 A 535 GLU MET ARG PHE ILE ILE ILE GLY LYS GLY ASP PRO GLU SEQRES 25 A 535 LEU GLU GLY TRP ALA ARG SER LEU GLU GLU LYS HIS GLY SEQRES 26 A 535 ASN VAL LYS VAL ILE THR GLU MET LEU SER ARG GLU PHE SEQRES 27 A 535 VAL ARG GLU LEU TYR GLY SER VAL ASP PHE VAL ILE ILE SEQRES 28 A 535 PRO SER TYR PHE GLU PRO PHE GLY LEU VAL ALA LEU GLU SEQRES 29 A 535 ALA MET CYS LEU GLY ALA ILE PRO ILE ALA SER ALA VAL SEQRES 30 A 535 GLY GLY LEU ARG ASP ILE ILE THR ASN GLU THR GLY ILE SEQRES 31 A 535 LEU VAL LYS ALA GLY ASP PRO GLY GLU LEU ALA ASN ALA SEQRES 32 A 535 ILE LEU LYS ALA LEU GLU LEU SER ARG SER ASP LEU SER SEQRES 33 A 535 LYS PHE ARG GLU ASN CYS LYS LYS ARG ALA MET SER PHE SEQRES 34 A 535 SER ARG GLN GLY ALA ASN MET LYS GLY ALA ILE THR LEU SEQRES 35 A 535 THR ILE LEU ILE GLY VAL PHE VAL VAL CYS TRP ALA PRO SEQRES 36 A 535 PHE PHE LEU HIS LEU ILE PHE TYR ILE SER CYS PRO GLN SEQRES 37 A 535 ASN PRO TYR CYS VAL CYS PHE MET SER HIS PHE ASN LEU SEQRES 38 A 535 TYR LEU ILE LEU ILE MET CYS ASN SER ILE ILE ASN PRO SEQRES 39 A 535 LEU ILE TYR ALA LEU ARG SER GLN GLU LEU ARG LYS THR SEQRES 40 A 535 PHE LYS GLU ILE ILE CYS CYS TYR GLU PHE LEU GLU VAL SEQRES 41 A 535 LEU PHE GLN GLY PRO HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 42 A 535 HIS HIS SEQRES 1 B 9 ACE NLE ASP HIS 4J2 ARG TRP LYS NH2 MODRES 6W25 YCM A 1004 CYS MODIFIED RESIDUE HET YCM A1004 10 HET ACE B 0 3 HET NLE B 1 8 HET 4J2 B 4 15 HET NH2 B 8 1 HET CA A2101 1 HET OLA A2102 6 HET OLA A2103 10 HET OLA A2104 7 HET OLA A2105 18 HET OLA A2106 12 HET OLA A2107 17 HET OLA A2108 8 HET OLA A2109 15 HETNAM YCM S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE HETNAM ACE ACETYL GROUP HETNAM NLE NORLEUCINE HETNAM 4J2 (2R)-2-AMINO-3-(NAPHTHALEN-2-YL)PROPANOIC ACID HETNAM NH2 AMINO GROUP HETNAM CA CALCIUM ION HETNAM OLA OLEIC ACID HETSYN YCM CYSTEINE-S-ACETAMIDE FORMUL 1 YCM C5 H10 N2 O3 S FORMUL 2 ACE C2 H4 O FORMUL 2 NLE C6 H13 N O2 FORMUL 2 4J2 C13 H13 N O2 FORMUL 2 NH2 H2 N FORMUL 3 CA CA 2+ FORMUL 4 OLA 8(C18 H34 O2) FORMUL 12 HOH *21(H2 O) HELIX 1 AA1 SER A 47 ASN A 72 1 26 HELIX 2 AA2 LYS A 73 HIS A 76 5 4 HELIX 3 AA3 SER A 77 THR A 110 1 34 HELIX 4 AA4 GLN A 115 TYR A 153 1 39 HELIX 5 AA5 TYR A 153 MET A 161 1 9 HELIX 6 AA6 THR A 162 TYR A 187 1 26 HELIX 7 AA7 SER A 190 PHE A 216 1 27 HELIX 8 AA8 MET A 218 GLY A 1001 1 6 HELIX 9 AA9 ASN A 1008 LEU A 1012 5 5 HELIX 10 AB1 SER A 1015 PHE A 1027 1 13 HELIX 11 AB2 GLY A 1047 SER A 1060 1 14 HELIX 12 AB3 LYS A 1061 GLN A 1065 5 5 HELIX 13 AB4 ASP A 1076 GLY A 1091 1 16 HELIX 14 AB5 SER A 1101 GLY A 1110 1 10 HELIX 15 AB6 GLY A 1125 LEU A 1134 1 10 HELIX 16 AB7 VAL A 1143 ILE A 1150 1 8 HELIX 17 AB8 ASP A 1162 SER A 1177 1 16 HELIX 18 AB9 LEU A 1181 PHE A 1195 1 15 HELIX 19 AC1 GLY A 238 CYS A 271 1 34 HELIX 20 AC2 ASN A 274 SER A 282 1 9 HELIX 21 AC3 HIS A 283 SER A 306 1 24 HELIX 22 AC4 SER A 306 GLY A 2008 1 24 SHEET 1 AA1 6 VAL A1093 ILE A1096 0 SHEET 2 AA1 6 MET A1067 ILE A1072 1 N PHE A1069 O LYS A1094 SHEET 3 AA1 6 VAL A1033 ILE A1038 1 N PHE A1035 O ARG A1068 SHEET 4 AA1 6 PHE A1114 ILE A1117 1 O ILE A1116 N MET A1036 SHEET 5 AA1 6 ILE A1137 SER A1141 1 O ILE A1139 N VAL A1115 SHEET 6 AA1 6 ILE A1156 VAL A1158 1 O ILE A1156 N PRO A1138 SSBOND 1 CYS A 271 CYS A 277 1555 1555 2.03 LINK C ASP A1003 N YCM A1004 1555 1555 1.35 LINK C YCM A1004 N SER A1005 1555 1555 1.35 LINK C ACE B 0 N NLE B 1 1555 1555 1.35 LINK C NLE B 1 N ASP B 2 1555 1555 1.34 LINK C HIS B 3 N 4J2 B 4 1555 1555 1.34 LINK C 4J2 B 4 N ARG B 5 1555 1555 1.33 LINK C LYS B 7 N NH2 B 8 1555 1555 1.33 LINK OE2 GLU A 100 CA CA A2101 1555 1555 2.21 LINK OD1 ASP A 122 CA CA A2101 1555 1555 2.27 LINK OD1 ASP A 126 CA CA A2101 1555 1555 2.64 LINK OD2 ASP A 126 CA CA A2101 1555 1555 2.73 LINK CA CA A2101 O ASP B 2 1555 1555 2.57 LINK CA CA A2101 O 4J2 B 4 1555 1555 2.26 SITE 1 AC1 5 GLU A 100 ASP A 122 ASP A 126 ASP B 2 SITE 2 AC1 5 4J2 B 4 SITE 1 AC2 2 ILE A 245 ARG A 305 SITE 1 AC3 3 HIS A 214 PHE A1124 OLA A2104 SITE 1 AC4 4 PRO A1123 ASP A1148 OLA A2103 OLA A2105 SITE 1 AC5 8 ALA A 144 PHE A 152 HIS A 222 GLY A1125 SITE 2 AC5 8 LEU A1129 ILE A1149 PHE A1195 OLA A2104 SITE 1 AC6 2 TYR A 212 PHE A 216 SITE 1 AC7 2 PHE A 81 TRP A 174 SITE 1 AC8 1 ALA A 192 SITE 1 AC9 1 ASP A1148 SITE 1 AD1 2 ASP A 122 ASP B 2 CRYST1 163.910 44.490 88.050 90.00 97.47 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006101 0.000000 0.000800 0.00000 SCALE2 0.000000 0.022477 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011454 0.00000