HEADER TRANSPORT PROTEIN 05-MAR-20 6W2B TITLE ANOMALOUS BROMINE SIGNAL REVEALS THE POSITION OF BR-PAROXETINE TITLE 2 COMPLEXED WITH THE SEROTONIN TRANSPORTER AT THE CENTRAL SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SODIUM-DEPENDENT SEROTONIN TRANSPORTER; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 76-618; COMPND 5 SYNONYM: SERT,5HT TRANSPORTER,5HTT,SOLUTE CARRIER FAMILY 6 MEMBER 4; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 8B6 HEAVY CHAIN ANTIBODY FRAGMENT; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: 8B6 LIGHT CHAIN ANTIBODY FRAGMENT; COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SLC6A4, HTT, SERT; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293 GNTI-; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 15 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 19 ORGANISM_COMMON: MOUSE; SOURCE 20 ORGANISM_TAXID: 10090; SOURCE 21 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 22 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS ANTIDEPRESSANT, COMPLEX, TRANSPORTER, ANTIBODY, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.A.COLEMAN,V.NAVRATNA,D.YANG REVDAT 5 18-OCT-23 6W2B 1 REMARK REVDAT 4 23-SEP-20 6W2B 1 JRNL HETSYN REVDAT 3 29-JUL-20 6W2B 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 15-JUL-20 6W2B 1 JRNL REVDAT 1 25-MAR-20 6W2B 0 JRNL AUTH J.A.COLEMAN,V.NAVRATNA,D.ANTERMITE,D.YANG,J.A.BULL,E.GOUAUX JRNL TITL CHEMICAL AND STRUCTURAL INVESTIGATION OF THE JRNL TITL 2 PAROXETINE-HUMAN SEROTONIN TRANSPORTER COMPLEX. JRNL REF ELIFE V. 9 2020 JRNL REFN ESSN 2050-084X JRNL PMID 32618269 JRNL DOI 10.7554/ELIFE.56427 REMARK 2 REMARK 2 RESOLUTION. 4.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 14512 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.261 REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 715 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7600 - 8.0000 1.00 2754 141 0.2273 0.2737 REMARK 3 2 8.0000 - 6.3700 1.00 2774 145 0.2937 0.2757 REMARK 3 3 6.3700 - 5.5700 1.00 2758 139 0.3123 0.3528 REMARK 3 4 5.5700 - 5.0600 1.00 2780 145 0.3431 0.3837 REMARK 3 5 5.0600 - 4.7000 1.00 2731 145 0.3552 0.3886 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.932 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 43.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 330.1 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 362.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7891 REMARK 3 ANGLE : 0.994 10774 REMARK 3 CHIRALITY : 0.227 1218 REMARK 3 PLANARITY : 0.007 1325 REMARK 3 DIHEDRAL : 17.201 2734 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6W2B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247507. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91840 REMARK 200 MONOCHROMATOR : CRYO-COOLED DOUBLE CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14667 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.690 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.82 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.33930 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 6AWN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS, PH 8.5, 20 MM SODIUM REMARK 280 SULFATE, 20 MM LITHIUM CHLORIDE, 36% PEG400, 0.5% 6- REMARK 280 AMINOHEXANOIC ACID, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.83000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.83000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 64.01000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 80.95500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 64.01000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 80.95500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.83000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 64.01000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 80.95500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.83000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 64.01000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 80.95500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 128.02000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 349.15000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 618 REMARK 465 LEU A 619 REMARK 465 VAL A 620 REMARK 465 PRO A 621 REMARK 465 ARG A 622 REMARK 465 ARG B 238 REMARK 465 GLY B 239 REMARK 465 SER B 240 REMARK 465 HIS B 241 REMARK 465 HIS B 242 REMARK 465 HIS B 243 REMARK 465 HIS B 244 REMARK 465 HIS B 245 REMARK 465 HIS B 246 REMARK 465 HIS B 247 REMARK 465 HIS B 248 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 76 CG CD OE1 NE2 REMARK 470 ASN A 145 CG OD1 ND2 REMARK 470 LYS A 201 CG CD CE NZ REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 GLU A 463 CG CD OE1 OE2 REMARK 470 ARG A 464 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 607 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 20 CG CD OE1 OE2 REMARK 470 ASN C 232 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 187 O THR B 207 2.11 REMARK 500 O ILE C 126 NE2 GLN C 186 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD1 ILE A 609 NE2 GLN B 216 4577 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 81 C TRP A 82 N 0.157 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 81 O - C - N ANGL. DEV. = -11.9 DEGREES REMARK 500 THR A 219 O - C - N ANGL. DEV. = -12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 75 -126.55 54.13 REMARK 500 ILE A 154 -71.77 -124.58 REMARK 500 ASN A 217 -5.49 61.08 REMARK 500 HIS A 235 -74.99 -123.62 REMARK 500 TYR A 350 55.56 -91.99 REMARK 500 ARG A 390 -132.90 -87.44 REMARK 500 GLU A 392 -169.26 56.77 REMARK 500 HIS A 456 -51.28 71.65 REMARK 500 ALA A 459 -3.87 93.18 REMARK 500 ALA A 543 -58.49 -122.98 REMARK 500 PRO A 614 -178.32 -69.96 REMARK 500 CYS B 41 83.57 -164.03 REMARK 500 SER B 110 80.50 -66.96 REMARK 500 PRO B 172 -148.64 -84.45 REMARK 500 SER B 185 46.16 -152.56 REMARK 500 SER B 187 50.81 -145.38 REMARK 500 PRO B 214 38.19 -91.40 REMARK 500 SER C 50 -111.08 61.08 REMARK 500 ALA C 71 -60.75 64.34 REMARK 500 TYR C 112 -47.12 -137.83 REMARK 500 ASN C 158 79.51 56.98 REMARK 500 ASP C 171 49.92 -143.15 REMARK 500 ASN C 210 -85.43 -118.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR A 219 15.93 REMARK 500 REMARK 500 REMARK: NULL DBREF 6W2B A 76 618 UNP P31645 SC6A4_HUMAN 76 618 DBREF 6W2B B 20 248 PDB 6W2B 6W2B 20 248 DBREF 6W2B C 21 234 PDB 6W2B 6W2B 21 234 SEQADV 6W2B GLY A 74 UNP P31645 EXPRESSION TAG SEQADV 6W2B SER A 75 UNP P31645 EXPRESSION TAG SEQADV 6W2B ALA A 110 UNP P31645 TYR 110 CONFLICT SEQADV 6W2B ALA A 291 UNP P31645 ILE 291 CONFLICT SEQADV 6W2B ALA A 554 UNP P31645 CYS 554 CONFLICT SEQADV 6W2B ALA A 580 UNP P31645 CYS 580 CONFLICT SEQADV 6W2B LEU A 619 UNP P31645 EXPRESSION TAG SEQADV 6W2B VAL A 620 UNP P31645 EXPRESSION TAG SEQADV 6W2B PRO A 621 UNP P31645 EXPRESSION TAG SEQADV 6W2B ARG A 622 UNP P31645 EXPRESSION TAG SEQRES 1 A 549 GLY SER GLN GLY GLU ARG GLU THR TRP GLY LYS LYS VAL SEQRES 2 A 549 ASP PHE LEU LEU SER VAL ILE GLY TYR ALA VAL ASP LEU SEQRES 3 A 549 GLY ASN VAL TRP ARG PHE PRO TYR ILE CYS ALA GLN ASN SEQRES 4 A 549 GLY GLY GLY ALA PHE LEU LEU PRO TYR THR ILE MET ALA SEQRES 5 A 549 ILE PHE GLY GLY ILE PRO LEU PHE TYR MET GLU LEU ALA SEQRES 6 A 549 LEU GLY GLN TYR HIS ARG ASN GLY CYS ILE SER ILE TRP SEQRES 7 A 549 ARG LYS ILE CYS PRO ILE PHE LYS GLY ILE GLY TYR ALA SEQRES 8 A 549 ILE CYS ILE ILE ALA PHE TYR ILE ALA SER TYR TYR ASN SEQRES 9 A 549 THR ILE MET ALA TRP ALA LEU TYR TYR LEU ILE SER SER SEQRES 10 A 549 PHE THR ASP GLN LEU PRO TRP THR SER CYS LYS ASN SER SEQRES 11 A 549 TRP ASN THR GLY ASN CYS THR ASN TYR PHE SER GLU ASP SEQRES 12 A 549 ASN ILE THR TRP THR LEU HIS SER THR SER PRO ALA GLU SEQRES 13 A 549 GLU PHE TYR THR ARG HIS VAL LEU GLN ILE HIS ARG SER SEQRES 14 A 549 LYS GLY LEU GLN ASP LEU GLY GLY ILE SER TRP GLN LEU SEQRES 15 A 549 ALA LEU CYS ILE MET LEU ILE PHE THR VAL ILE TYR PHE SEQRES 16 A 549 SER ILE TRP LYS GLY VAL LYS THR SER GLY LYS VAL VAL SEQRES 17 A 549 TRP VAL THR ALA THR PHE PRO TYR ILE ALA LEU SER VAL SEQRES 18 A 549 LEU LEU VAL ARG GLY ALA THR LEU PRO GLY ALA TRP ARG SEQRES 19 A 549 GLY VAL LEU PHE TYR LEU LYS PRO ASN TRP GLN LYS LEU SEQRES 20 A 549 LEU GLU THR GLY VAL TRP ILE ASP ALA ALA ALA GLN ILE SEQRES 21 A 549 PHE PHE SER LEU GLY PRO GLY PHE GLY VAL LEU LEU ALA SEQRES 22 A 549 PHE ALA SER TYR ASN LYS PHE ASN ASN ASN CYS TYR GLN SEQRES 23 A 549 ASP ALA LEU VAL THR SER VAL VAL ASN CYS MET THR SER SEQRES 24 A 549 PHE VAL SER GLY PHE VAL ILE PHE THR VAL LEU GLY TYR SEQRES 25 A 549 MET ALA GLU MET ARG ASN GLU ASP VAL SER GLU VAL ALA SEQRES 26 A 549 LYS ASP ALA GLY PRO SER LEU LEU PHE ILE THR TYR ALA SEQRES 27 A 549 GLU ALA ILE ALA ASN MET PRO ALA SER THR PHE PHE ALA SEQRES 28 A 549 ILE ILE PHE PHE LEU MET LEU ILE THR LEU GLY LEU ASP SEQRES 29 A 549 SER THR PHE ALA GLY LEU GLU GLY VAL ILE THR ALA VAL SEQRES 30 A 549 LEU ASP GLU PHE PRO HIS VAL TRP ALA LYS ARG ARG GLU SEQRES 31 A 549 ARG PHE VAL LEU ALA VAL VAL ILE THR CYS PHE PHE GLY SEQRES 32 A 549 SER LEU VAL THR LEU THR PHE GLY GLY ALA TYR VAL VAL SEQRES 33 A 549 LYS LEU LEU GLU GLU TYR ALA THR GLY PRO ALA VAL LEU SEQRES 34 A 549 THR VAL ALA LEU ILE GLU ALA VAL ALA VAL SER TRP PHE SEQRES 35 A 549 TYR GLY ILE THR GLN PHE CYS ARG ASP VAL LYS GLU MET SEQRES 36 A 549 LEU GLY PHE SER PRO GLY TRP PHE TRP ARG ILE CYS TRP SEQRES 37 A 549 VAL ALA ILE SER PRO LEU PHE LEU LEU PHE ILE ILE ALA SEQRES 38 A 549 SER PHE LEU MET SER PRO PRO GLN LEU ARG LEU PHE GLN SEQRES 39 A 549 TYR ASN TYR PRO TYR TRP SER ILE ILE LEU GLY TYR ALA SEQRES 40 A 549 ILE GLY THR SER SER PHE ILE CYS ILE PRO THR TYR ILE SEQRES 41 A 549 ALA TYR ARG LEU ILE ILE THR PRO GLY THR PHE LYS GLU SEQRES 42 A 549 ARG ILE ILE LYS SER ILE THR PRO GLU THR PRO THR LEU SEQRES 43 A 549 VAL PRO ARG SEQRES 1 B 229 GLU VAL GLN LEU GLN GLN SER GLY PRO GLU LEU VAL LYS SEQRES 2 B 229 PRO GLY ALA SER VAL LYS ILE SER CYS LYS ALA SER GLY SEQRES 3 B 229 TYR THR PHE THR ASP TYR TYR MET ASN TRP VAL LYS GLN SEQRES 4 B 229 SER HIS GLY LYS SER LEU GLU TRP ILE GLY ASN ILE ASN SEQRES 5 B 229 PRO ASN ASN GLY GLY THR SER TYR ASN GLN LYS PHE LYS SEQRES 6 B 229 GLY LYS ALA THR LEU THR VAL ASP LYS SER SER THR THR SEQRES 7 B 229 ALA TYR MET GLU LEU ARG SER LEU THR SER GLU ASP SER SEQRES 8 B 229 ALA VAL TYR TYR CYS THR ARG SER PRO VAL ARG PRO TYR SEQRES 9 B 229 TYR PHE ASP TYR TRP GLY GLN GLY THR THR LEU THR VAL SEQRES 10 B 229 SER SER ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU SEQRES 11 B 229 ALA PRO GLY CYS GLY ASP THR THR GLY SER SER VAL THR SEQRES 12 B 229 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU SER VAL SEQRES 13 B 229 THR VAL THR TRP ASN SER GLY SER LEU SER SER SER VAL SEQRES 14 B 229 HIS THR PHE PRO ALA LEU LEU GLN SER GLY LEU TYR THR SEQRES 15 B 229 MET SER SER SER VAL THR VAL PRO SER SER THR TRP PRO SEQRES 16 B 229 SER GLN THR VAL THR CYS SER VAL ALA HIS PRO ALA SER SEQRES 17 B 229 SER THR THR VAL ASP LYS LYS LEU GLU PRO ARG GLY SER SEQRES 18 B 229 HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 C 214 ASP ILE VAL MET THR GLN SER HIS LYS PHE MET SER THR SEQRES 2 C 214 SER VAL GLY ASP ARG VAL SER ILE THR CYS LYS ALA SER SEQRES 3 C 214 GLN ASP VAL SER THR ALA VAL ALA TRP TYR GLN GLN LYS SEQRES 4 C 214 PRO GLY GLN SER PRO LYS LEU LEU ILE TYR SER ALA SER SEQRES 5 C 214 TYR ARG TYR THR GLY VAL PRO ASP ARG PHE THR GLY SER SEQRES 6 C 214 GLY SER GLY THR ASP PHE THR PHE THR ILE SER SER VAL SEQRES 7 C 214 GLN ALA GLU ASP LEU ALA VAL TYR TYR CYS GLN GLN HIS SEQRES 8 C 214 TYR SER ILE PRO ARG THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 C 214 GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 C 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 C 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 C 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 C 214 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 C 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 C 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 C 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 C 214 PHE ASN ARG ASN GLU CYS HET NAG A 701 14 HET RFS A 703 24 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM RFS BR-PAROXETINE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN RFS (3S,4R)-3-{[(2H-1,3-BENZODIOXOL-5-YL)OXY]METHYL}-4-(4- HETSYN 2 RFS BROMOPHENYL)PIPERIDINE FORMUL 4 NAG C8 H15 N O6 FORMUL 5 RFS C19 H20 BR N O3 HELIX 1 AA1 LYS A 84 VAL A 97 1 14 HELIX 2 AA2 ASP A 98 ASN A 112 1 15 HELIX 3 AA3 GLY A 113 ALA A 116 5 4 HELIX 4 AA4 PHE A 117 GLY A 128 1 12 HELIX 5 AA5 GLY A 128 ARG A 144 1 17 HELIX 6 AA6 ILE A 148 LYS A 153 1 6 HELIX 7 AA7 CYS A 155 PHE A 158 5 4 HELIX 8 AA8 LYS A 159 SER A 189 1 31 HELIX 9 AA9 SER A 226 HIS A 235 1 10 HELIX 10 AB1 GLN A 238 SER A 242 5 5 HELIX 11 AB2 SER A 252 TRP A 271 1 20 HELIX 12 AB3 GLY A 273 ALA A 285 1 13 HELIX 13 AB4 THR A 286 THR A 301 1 16 HELIX 14 AB5 ALA A 305 LYS A 314 1 10 HELIX 15 AB6 ASN A 316 LEU A 321 5 6 HELIX 16 AB7 GLU A 322 GLY A 338 1 17 HELIX 17 AB8 GLY A 342 TYR A 350 1 9 HELIX 18 AB9 CYS A 357 ARG A 390 1 34 HELIX 19 AC1 SER A 395 LYS A 399 5 5 HELIX 20 AC2 GLY A 402 ILE A 408 1 7 HELIX 21 AC3 ILE A 408 ASN A 416 1 9 HELIX 22 AC4 ALA A 419 PHE A 454 1 36 HELIX 23 AC5 ARG A 461 LEU A 478 1 18 HELIX 24 AC6 GLY A 484 TYR A 495 1 12 HELIX 25 AC7 ALA A 496 TRP A 514 1 19 HELIX 26 AC8 GLY A 517 LEU A 529 1 13 HELIX 27 AC9 GLY A 534 ALA A 543 1 10 HELIX 28 AD1 ALA A 543 SER A 559 1 17 HELIX 29 AD2 TRP A 573 SER A 584 1 12 HELIX 30 AD3 ILE A 587 THR A 600 1 14 HELIX 31 AD4 THR A 603 THR A 613 1 11 HELIX 32 AD5 THR B 47 TYR B 51 5 5 HELIX 33 AD6 SER B 211 TRP B 213 5 3 HELIX 34 AD7 GLN C 99 LEU C 103 5 5 HELIX 35 AD8 SER C 141 GLY C 148 1 8 HELIX 36 AD9 LYS C 203 GLU C 207 1 5 SHEET 1 AA1 2 GLN B 22 GLN B 25 0 SHEET 2 AA1 2 CYS B 41 SER B 44 -1 O LYS B 42 N GLN B 24 SHEET 1 AA2 6 GLU B 29 VAL B 31 0 SHEET 2 AA2 6 THR B 132 VAL B 136 1 O THR B 135 N GLU B 29 SHEET 3 AA2 6 VAL B 112 SER B 118 -1 N TYR B 113 O THR B 132 SHEET 4 AA2 6 TYR B 52 GLN B 58 -1 N VAL B 56 O TYR B 114 SHEET 5 AA2 6 LEU B 64 ILE B 70 -1 O GLU B 65 N LYS B 57 SHEET 6 AA2 6 SER B 78 TYR B 79 -1 O SER B 78 N ASN B 69 SHEET 1 AA3 3 VAL B 37 ILE B 39 0 SHEET 2 AA3 3 THR B 97 LEU B 102 -1 O LEU B 102 N VAL B 37 SHEET 3 AA3 3 ALA B 87 ASP B 92 -1 N THR B 90 O TYR B 99 SHEET 1 AA4 4 SER B 145 LEU B 149 0 SHEET 2 AA4 4 SER B 160 TYR B 170 -1 O LEU B 166 N TYR B 147 SHEET 3 AA4 4 LEU B 199 PRO B 209 -1 O TYR B 200 N TYR B 170 SHEET 4 AA4 4 VAL B 188 GLN B 196 -1 N PHE B 191 O SER B 203 SHEET 1 AA5 3 THR B 176 TRP B 179 0 SHEET 2 AA5 3 THR B 219 HIS B 224 -1 O SER B 221 N THR B 178 SHEET 3 AA5 3 THR B 229 LYS B 234 -1 O THR B 229 N HIS B 224 SHEET 1 AA6 6 PHE C 30 SER C 34 0 SHEET 2 AA6 6 THR C 122 LYS C 127 1 O LYS C 127 N THR C 33 SHEET 3 AA6 6 VAL C 105 GLN C 110 -1 N TYR C 106 O THR C 122 SHEET 4 AA6 6 VAL C 53 GLN C 58 -1 N ALA C 54 O GLN C 109 SHEET 5 AA6 6 LYS C 65 TYR C 69 -1 O LYS C 65 N GLN C 57 SHEET 6 AA6 6 TYR C 73 ARG C 74 -1 O TYR C 73 N TYR C 69 SHEET 1 AA7 3 VAL C 39 LYS C 44 0 SHEET 2 AA7 3 ASP C 90 ILE C 95 -1 O ILE C 95 N VAL C 39 SHEET 3 AA7 3 PHE C 82 SER C 85 -1 N THR C 83 O THR C 94 SHEET 1 AA8 4 THR C 134 PHE C 138 0 SHEET 2 AA8 4 GLY C 149 PHE C 159 -1 O ASN C 157 N THR C 134 SHEET 3 AA8 4 TYR C 193 THR C 202 -1 O SER C 197 N CYS C 154 SHEET 4 AA8 4 VAL C 179 TRP C 183 -1 N LEU C 180 O THR C 198 SHEET 1 AA9 4 GLU C 174 ARG C 175 0 SHEET 2 AA9 4 ASN C 165 LYS C 169 -1 N TRP C 168 O ARG C 175 SHEET 3 AA9 4 TYR C 212 THR C 217 -1 O THR C 217 N ASN C 165 SHEET 4 AA9 4 ILE C 225 PHE C 229 -1 O ILE C 225 N ALA C 216 SSBOND 1 CYS A 200 CYS A 209 1555 1555 2.04 SSBOND 2 CYS B 41 CYS B 115 1555 1555 2.03 SSBOND 3 CYS B 153 CYS C 234 1555 1555 2.04 SSBOND 4 CYS B 165 CYS B 220 1555 1555 2.03 SSBOND 5 CYS C 43 CYS C 108 1555 1555 2.03 SSBOND 6 CYS C 154 CYS C 214 1555 1555 2.03 LINK ND2 ASN A 208 C1 NAG A 701 1555 1555 1.45 CISPEP 1 GLY A 249 GLY A 250 0 2.59 CISPEP 2 ARG B 121 PRO B 122 0 -3.11 CISPEP 3 PHE B 171 PRO B 172 0 -2.79 CISPEP 4 SER B 183 LEU B 184 0 -0.78 CISPEP 5 TRP B 213 PRO B 214 0 -0.50 CISPEP 6 ILE C 114 PRO C 115 0 1.99 CISPEP 7 TYR C 160 PRO C 161 0 3.22 CRYST1 128.020 161.910 139.660 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007811 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006176 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007160 0.00000