HEADER OXIDOREDUCTASE/INHIBITOR 06-MAR-20 6W2N TITLE TRYPANOSOMA CRUZI MALIC ENZYME IN COMPLEX WITH INHIBITOR (MEC009) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALIC ENZYME; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI (STRAIN CL BRENER); SOURCE 3 ORGANISM_TAXID: 353153; SOURCE 4 STRAIN: CL BRENER; SOURCE 5 GENE: TC00.1047053505183.30; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET_SUMO KEYWDS INHIBITOR, ISOMERASE, OXIDOREDUCTASE, OXIDOREDUCTASE-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.F.MERCALDI,M.FAGUNDES,J.N.FARIA,A.T.CORDEIRO REVDAT 3 18-OCT-23 6W2N 1 REMARK REVDAT 2 20-APR-22 6W2N 1 JRNL REVDAT 1 10-MAR-21 6W2N 0 JRNL AUTH G.F.MERCALDI,A.G.EUFRASIO,A.T.RANZANI,J.DO NASCIMENTO FARIA, JRNL AUTH 2 S.G.R.MOTA,M.FAGUNDES,M.BRUDER,A.T.CORDEIRO JRNL TITL TRYPANOSOMA CRUZI MALIC ENZYME IS THE TARGET FOR SULFONAMIDE JRNL TITL 2 HITS FROM THE GSK CHAGAS BOX. JRNL REF ACS INFECT DIS. V. 7 2455 2021 JRNL REFN ESSN 2373-8227 JRNL PMID 34279922 JRNL DOI 10.1021/ACSINFECDIS.1C00231 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 50910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2607 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3426 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 170 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4257 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 337 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.141 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.427 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4408 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4158 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5981 ; 1.715 ; 1.653 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9632 ; 1.399 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 545 ; 6.518 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 223 ;33.122 ;22.063 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 752 ;13.803 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;18.987 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 576 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4909 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 917 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6W2N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247511. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.4586 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53637 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 47.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.96800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6W29 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 1.2-1.4 M NA3-CITRATE, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 117.25300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.91750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.91750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 175.87950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.91750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.91750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.62650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.91750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.91750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 175.87950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.91750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.91750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.62650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 117.25300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 73.83500 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -73.83500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 12 REMARK 465 GLY A 13 REMARK 465 ARG A 14 REMARK 465 GLU A 559 REMARK 465 VAL A 560 REMARK 465 GLY A 561 REMARK 465 GLU A 562 REMARK 465 GLN A 563 REMARK 465 VAL A 564 REMARK 465 LEU A 565 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 50 O HOH A 701 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 78 NH1 ARG A 117 7645 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 508 CD GLU A 508 OE2 0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 469 CB - CA - C ANGL. DEV. = 7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 100 -139.53 -142.01 REMARK 500 ARG A 119 41.31 -85.20 REMARK 500 GLN A 141 -119.95 -82.57 REMARK 500 ARG A 153 127.27 81.65 REMARK 500 TRP A 234 61.78 -119.17 REMARK 500 SER A 557 -46.13 -130.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SJD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6W29 RELATED DB: PDB DBREF 6W2N A 12 565 UNP Q4DJ68 Q4DJ68_TRYCC 12 565 SEQRES 1 A 554 GLN GLY ARG ALA ILE LEU THR ASP ARG TYR ILE ASN ARG SEQRES 2 A 554 GLY THR ALA PHE THR MET GLU GLU ARG GLN LYS LEU HIS SEQRES 3 A 554 ILE LEU GLY ARG LEU PRO PRO VAL VAL GLU THR LEU GLU SEQRES 4 A 554 GLU GLN VAL ALA ARG VAL TYR GLY GLN VAL LYS LYS TYR SEQRES 5 A 554 GLU LYS PRO ILE ASN ARG TYR GLN HIS LEU VAL SER VAL SEQRES 6 A 554 HIS SER THR ASN THR THR LEU TYR TYR ALA THR ILE LEU SEQRES 7 A 554 ALA HIS LEU GLU GLU MET LEU PRO ILE ILE TYR THR PRO SEQRES 8 A 554 THR VAL GLY GLU ALA CYS MET GLU TYR SER HIS LEU PHE SEQRES 9 A 554 PHE ARG GLU ARG GLY VAL TYR PHE ASN ARG LEU TYR LYS SEQRES 10 A 554 GLY GLN PHE ARG ASN ILE MET ARG ASP ALA GLY TYR GLN SEQRES 11 A 554 LYS VAL GLU VAL VAL VAL ILE THR ASP GLY SER ARG ILE SEQRES 12 A 554 LEU GLY LEU GLY ASP LEU GLY SER ASN GLY ILE GLY ILE SEQRES 13 A 554 SER ILE GLY LYS CYS SER LEU TYR VAL ALA GLY ALA GLY SEQRES 14 A 554 ILE ASP PRO ARG LEU ILE VAL PRO VAL ILE LEU ASP VAL SEQRES 15 A 554 GLY THR ASN ASN GLU ARG TYR LEU GLN ASP LYS ASP TYR SEQRES 16 A 554 LEU GLY MET ARG GLU LYS ARG LEU GLY ASP GLU GLU PHE SEQRES 17 A 554 TYR GLU LEU LEU ASP GLU PHE MET GLU ALA ALA SER ALA SEQRES 18 A 554 GLU TRP PRO ASN ALA VAL ILE GLN PHE GLU ASP PHE SER SEQRES 19 A 554 ASN ASN HIS CYS PHE ASP ILE MET GLU ARG TYR GLN LYS SEQRES 20 A 554 LYS TYR ARG CYS PHE ASN ASP ASP ILE GLN GLY THR GLY SEQRES 21 A 554 ALA VAL ILE ALA ALA GLY PHE LEU ASN ALA ILE LYS LEU SEQRES 22 A 554 SER GLY VAL SER PRO LEU GLN GLN ARG ILE VAL VAL PHE SEQRES 23 A 554 GLY ALA GLY SER ALA ALA VAL GLY VAL ALA ASN ASN ILE SEQRES 24 A 554 ALA ALA LEU ALA ALA ARG MET TYR LYS PHE PRO VAL GLN SEQRES 25 A 554 ASP LEU VAL LYS THR PHE TYR LEU VAL ASP THR LYS GLY SEQRES 26 A 554 LEU VAL THR THR THR ARG GLY ASP GLN LEU ALA ALA HIS SEQRES 27 A 554 LYS LYS LEU LEU ALA ARG THR ASP VAL SER ALA GLU ASP SEQRES 28 A 554 SER ALA LYS LEU ARG THR LEU GLU GLU ILE VAL ARG PHE SEQRES 29 A 554 VAL LYS PRO THR THR LEU LEU GLY LEU GLY GLY VAL GLY SEQRES 30 A 554 PRO ALA PHE THR GLU GLU ILE VAL LYS MET VAL MET GLN SEQRES 31 A 554 ASN THR GLU ARG PRO ILE ILE PHE PRO LEU SER ASN PRO SEQRES 32 A 554 THR SER LYS ALA GLU VAL THR PRO GLU ASN ALA TYR LYS SEQRES 33 A 554 TRP THR ASN GLY ALA ALA ILE VAL ALA SER GLY SER PRO SEQRES 34 A 554 PHE PRO PRO THR THR ILE GLY GLY LYS THR PHE LYS PRO SEQRES 35 A 554 SER GLN GLY ASN ASN LEU TYR VAL PHE PRO GLY VAL GLY SEQRES 36 A 554 LEU GLY CYS ALA LEU ALA GLN PRO THR HIS ILE PRO GLU SEQRES 37 A 554 GLU LEU LEU LEU THR ALA SER GLU SER LEU ASN LEU LEU SEQRES 38 A 554 THR THR GLU GLY ASP LEU ARG GLU GLY ARG LEU TYR PRO SEQRES 39 A 554 PRO LEU GLU ASP ILE HIS ASN ILE SER ALA ASN VAL ALA SEQRES 40 A 554 THR ASP VAL ILE LEU GLU ALA GLN ARG MET LYS ILE ASP SEQRES 41 A 554 ASN ASN LYS LYS LEU PRO ARG THR ARG ASP GLU LEU LEU SEQRES 42 A 554 ALA PHE VAL LYS LYS ALA MET TRP LYS PRO VAL TYR SER SEQRES 43 A 554 GLY GLU VAL GLY GLU GLN VAL LEU HET SJD A 601 30 HET CIT A 602 13 HET EPE A 603 15 HETNAM SJD 3,5-BIS(FLUORANYL)-~{N}-[3-[(2-FLUORANYL-4-METHOXY- HETNAM 2 SJD PHENYL)SULFAMOYL]PHENYL]BENZAMIDE HETNAM CIT CITRIC ACID HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 2 SJD C20 H15 F3 N2 O4 S FORMUL 3 CIT C6 H8 O7 FORMUL 4 EPE C8 H18 N2 O4 S FORMUL 5 HOH *337(H2 O) HELIX 1 AA1 ARG A 24 PHE A 28 5 5 HELIX 2 AA2 THR A 29 LEU A 36 1 8 HELIX 3 AA3 THR A 48 TYR A 63 1 16 HELIX 4 AA4 LYS A 65 ASN A 80 1 16 HELIX 5 AA5 ASN A 80 HIS A 91 1 12 HELIX 6 AA6 HIS A 91 TYR A 100 1 10 HELIX 7 AA7 PRO A 102 TYR A 111 1 10 HELIX 8 AA8 SER A 112 PHE A 116 5 5 HELIX 9 AA9 ASN A 124 LYS A 128 5 5 HELIX 10 AB1 GLN A 130 GLY A 139 1 10 HELIX 11 AB2 LEU A 160 ASN A 163 5 4 HELIX 12 AB3 GLY A 164 GLY A 180 1 17 HELIX 13 AB4 ASP A 182 ARG A 184 5 3 HELIX 14 AB5 ASN A 197 ASP A 203 1 7 HELIX 15 AB6 GLY A 215 TRP A 234 1 20 HELIX 16 AB7 HIS A 248 GLN A 257 1 10 HELIX 17 AB8 ASP A 265 GLY A 286 1 22 HELIX 18 AB9 SER A 288 GLN A 292 5 5 HELIX 19 AC1 GLY A 300 LYS A 319 1 20 HELIX 20 AC2 PRO A 321 LYS A 327 1 7 HELIX 21 AC3 ALA A 347 LEU A 352 1 6 HELIX 22 AC4 SER A 359 LYS A 365 1 7 HELIX 23 AC5 THR A 368 LYS A 377 1 10 HELIX 24 AC6 THR A 392 GLN A 401 1 10 HELIX 25 AC7 THR A 421 ASN A 430 1 10 HELIX 26 AC8 ASN A 457 TYR A 460 5 4 HELIX 27 AC9 VAL A 461 GLN A 473 1 13 HELIX 28 AD1 PRO A 478 LEU A 492 1 15 HELIX 29 AD2 THR A 494 GLU A 500 1 7 HELIX 30 AD3 PRO A 506 GLU A 508 5 3 HELIX 31 AD4 ASP A 509 LYS A 529 1 21 HELIX 32 AD5 THR A 539 MET A 551 1 13 SHEET 1 AA1 5 VAL A 121 PHE A 123 0 SHEET 2 AA1 5 ILE A 186 LEU A 191 1 O ILE A 190 N PHE A 123 SHEET 3 AA1 5 VAL A 145 THR A 149 1 N VAL A 147 O VAL A 189 SHEET 4 AA1 5 VAL A 238 PHE A 241 1 O GLN A 240 N VAL A 146 SHEET 5 AA1 5 CYS A 262 ASN A 264 1 O PHE A 263 N PHE A 241 SHEET 1 AA2 7 GLY A 336 LEU A 337 0 SHEET 2 AA2 7 PHE A 329 ASP A 333 -1 N ASP A 333 O GLY A 336 SHEET 3 AA2 7 ILE A 294 PHE A 297 1 N ILE A 294 O TYR A 330 SHEET 4 AA2 7 THR A 380 GLY A 383 1 O LEU A 382 N VAL A 295 SHEET 5 AA2 7 ILE A 407 PRO A 410 1 O PHE A 409 N GLY A 383 SHEET 6 AA2 7 ILE A 434 SER A 437 1 O ILE A 434 N ILE A 408 SHEET 7 AA2 7 SER A 454 GLN A 455 1 O SER A 454 N VAL A 435 SHEET 1 AA3 2 THR A 444 ILE A 446 0 SHEET 2 AA3 2 LYS A 449 PHE A 451 -1 O PHE A 451 N THR A 444 CISPEP 1 THR A 101 PRO A 102 0 -1.82 CISPEP 2 ASN A 413 PRO A 414 0 -7.20 SITE 1 AC1 19 LEU A 17 THR A 18 ASN A 23 GLY A 25 SITE 2 AC1 19 THR A 26 LEU A 42 GLN A 52 ARG A 55 SITE 3 AC1 19 VAL A 56 GLN A 59 HIS A 72 SER A 75 SITE 4 AC1 19 VAL A 76 THR A 79 ASN A 80 LEU A 83 SITE 5 AC1 19 PHE A 116 GLU A 118 HOH A 784 SITE 1 AC2 4 ARG A 20 TYR A 21 ARG A 119 TYR A 140 SITE 1 AC3 10 GLU A 144 GLY A 180 ILE A 181 ASP A 182 SITE 2 AC3 10 GLY A 448 LYS A 449 THR A 450 LEU A 471 SITE 3 AC3 10 ALA A 550 HOH A 705 CRYST1 73.835 73.835 234.506 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013544 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013544 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004264 0.00000