HEADER HYDROLASE 08-MAR-20 6W34 TITLE CRYSTAL STRUCTURE OF CLASS A BETA-LACTAMASE FROM BACILLUS CEREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS (STRAIN ATCC 14579 / DSM 31 / SOURCE 3 JCM 2152 / NBRC 15305 / NCIMB 9373 / NRRL B-3711); SOURCE 4 ORGANISM_TAXID: 226900; SOURCE 5 STRAIN: ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / SOURCE 6 NRRL B-3711; SOURCE 7 GENE: BC_2473; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS BETA-LACTAMASES, ANTIBIOTIC RESISTANT, STRUCTURAL GENOMICS, CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,N.MALTSEVA,M.ENDRES,A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS AUTHOR 2 OF INFECTIOUS DISEASES (CSGID) REVDAT 2 18-OCT-23 6W34 1 REMARK REVDAT 1 25-MAR-20 6W34 0 JRNL AUTH Y.KIM,N.MALTSEVA,M.ENDRES,A.JOACHIMIAK, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF CLASS A BETA-LACTAMASE FROM BACILLUS JRNL TITL 2 CEREUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 3 NUMBER OF REFLECTIONS : 78242 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.690 REMARK 3 FREE R VALUE TEST SET COUNT : 3666 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.6100 - 4.3000 0.93 2938 183 0.1584 0.1767 REMARK 3 2 4.3000 - 3.4100 0.89 2905 114 0.1606 0.1895 REMARK 3 3 3.4100 - 2.9800 0.93 2994 126 0.1773 0.2372 REMARK 3 4 2.9800 - 2.7100 0.95 3066 132 0.1820 0.2012 REMARK 3 5 2.7100 - 2.5100 0.90 2888 143 0.1704 0.2125 REMARK 3 6 2.5100 - 2.3700 0.89 2853 160 0.1503 0.1878 REMARK 3 7 2.3700 - 2.2500 0.92 2997 145 0.1498 0.1939 REMARK 3 8 2.2500 - 2.1500 0.93 2989 127 0.1393 0.2019 REMARK 3 9 2.1500 - 2.0700 0.93 3003 126 0.1391 0.2021 REMARK 3 10 2.0700 - 1.9900 0.93 2990 165 0.1350 0.1694 REMARK 3 11 1.9900 - 1.9300 0.84 2651 176 0.1340 0.1744 REMARK 3 12 1.9300 - 1.8800 0.88 2858 133 0.1309 0.2014 REMARK 3 13 1.8800 - 1.8300 0.91 2886 163 0.1342 0.1915 REMARK 3 14 1.8300 - 1.7800 0.91 2905 145 0.1312 0.1766 REMARK 3 15 1.7800 - 1.7400 0.92 2960 153 0.1316 0.2054 REMARK 3 16 1.7400 - 1.7100 0.93 2987 156 0.1376 0.1906 REMARK 3 17 1.7100 - 1.6700 0.91 2930 142 0.1393 0.2238 REMARK 3 18 1.6700 - 1.6400 0.82 2663 107 0.1453 0.2000 REMARK 3 19 1.6400 - 1.6100 0.87 2816 129 0.1492 0.2111 REMARK 3 20 1.6100 - 1.5800 0.89 2841 147 0.1626 0.2165 REMARK 3 21 1.5800 - 1.5600 0.89 2896 130 0.1712 0.2412 REMARK 3 22 1.5600 - 1.5300 0.90 2850 140 0.1825 0.2442 REMARK 3 23 1.5300 - 1.5100 0.89 2901 144 0.1983 0.2508 REMARK 3 24 1.5100 - 1.4900 0.88 2849 129 0.2064 0.2216 REMARK 3 25 1.4900 - 1.4700 0.87 2797 165 0.2389 0.2908 REMARK 3 26 1.4700 - 1.4500 0.66 2163 86 0.2838 0.3438 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.156 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.492 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4174 REMARK 3 ANGLE : 0.750 5662 REMARK 3 CHIRALITY : 0.075 646 REMARK 3 PLANARITY : 0.004 739 REMARK 3 DIHEDRAL : 20.127 1546 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6W34 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247535. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97624 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78371 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.70200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, HKL-3000 REMARK 200 STARTING MODEL: PDBID 3QHY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 0.1 M MES PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLY A 3 REMARK 465 MET A 4 REMARK 465 MET A 5 REMARK 465 ILE A 6 REMARK 465 LEU A 7 REMARK 465 LYS A 8 REMARK 465 ASN A 9 REMARK 465 LYS A 10 REMARK 465 ARG A 11 REMARK 465 MET A 12 REMARK 465 LEU A 13 REMARK 465 LYS A 14 REMARK 465 ILE A 15 REMARK 465 GLY A 16 REMARK 465 ILE A 17 REMARK 465 CYS A 18 REMARK 465 VAL A 19 REMARK 465 GLY A 20 REMARK 465 ILE A 21 REMARK 465 LEU A 22 REMARK 465 GLY A 23 REMARK 465 LEU A 24 REMARK 465 SER A 25 REMARK 465 ILE A 26 REMARK 465 THR A 27 REMARK 465 SER A 28 REMARK 465 LEU A 29 REMARK 465 GLU A 30 REMARK 465 ALA A 31 REMARK 465 PHE A 32 REMARK 465 THR A 33 REMARK 465 GLY A 34 REMARK 465 GLY A 35 REMARK 465 ALA A 36 REMARK 465 LEU A 37 REMARK 465 GLN A 38 REMARK 465 VAL A 39 REMARK 465 GLU A 40 REMARK 465 ALA A 41 REMARK 465 LYS A 42 REMARK 465 GLU A 43 REMARK 465 LYS A 44 REMARK 465 THR A 45 REMARK 465 GLY A 46 REMARK 465 GLN A 47 REMARK 465 VAL A 48 REMARK 465 LYS A 49 REMARK 465 HIS A 50 REMARK 465 LYS A 51 REMARK 465 ASN A 52 REMARK 465 LYS A 312 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 GLY B 3 REMARK 465 MET B 4 REMARK 465 MET B 5 REMARK 465 ILE B 6 REMARK 465 LEU B 7 REMARK 465 LYS B 8 REMARK 465 ASN B 9 REMARK 465 LYS B 10 REMARK 465 ARG B 11 REMARK 465 MET B 12 REMARK 465 LEU B 13 REMARK 465 LYS B 14 REMARK 465 ILE B 15 REMARK 465 GLY B 16 REMARK 465 ILE B 17 REMARK 465 CYS B 18 REMARK 465 VAL B 19 REMARK 465 GLY B 20 REMARK 465 ILE B 21 REMARK 465 LEU B 22 REMARK 465 GLY B 23 REMARK 465 LEU B 24 REMARK 465 SER B 25 REMARK 465 ILE B 26 REMARK 465 THR B 27 REMARK 465 SER B 28 REMARK 465 LEU B 29 REMARK 465 GLU B 30 REMARK 465 ALA B 31 REMARK 465 PHE B 32 REMARK 465 THR B 33 REMARK 465 GLY B 34 REMARK 465 GLY B 35 REMARK 465 ALA B 36 REMARK 465 LEU B 37 REMARK 465 GLN B 38 REMARK 465 VAL B 39 REMARK 465 GLU B 40 REMARK 465 ALA B 41 REMARK 465 LYS B 42 REMARK 465 GLU B 43 REMARK 465 LYS B 44 REMARK 465 THR B 45 REMARK 465 GLY B 46 REMARK 465 GLN B 47 REMARK 465 VAL B 48 REMARK 465 LYS B 49 REMARK 465 HIS B 50 REMARK 465 LYS B 51 REMARK 465 LYS B 312 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN B 52 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 94 -143.14 49.25 REMARK 500 TYR A 128 74.31 58.81 REMARK 500 ASP A 186 -34.08 -134.51 REMARK 500 LEU A 243 -119.86 -111.95 REMARK 500 ALA B 94 -141.36 49.82 REMARK 500 TYR B 128 80.64 58.99 REMARK 500 ASP B 137 -54.68 76.10 REMARK 500 ASP B 137 -54.16 76.10 REMARK 500 ASP B 186 -34.46 -130.17 REMARK 500 LEU B 243 -116.11 -106.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 689 DISTANCE = 7.16 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP97250 RELATED DB: TARGETTRACK DBREF 6W34 A 1 312 UNP Q81DA0 Q81DA0_BACCR 1 312 DBREF 6W34 B 1 312 UNP Q81DA0 Q81DA0_BACCR 1 312 SEQADV 6W34 SER A -2 UNP Q81DA0 EXPRESSION TAG SEQADV 6W34 ASN A -1 UNP Q81DA0 EXPRESSION TAG SEQADV 6W34 ALA A 0 UNP Q81DA0 EXPRESSION TAG SEQADV 6W34 THR A 278 UNP Q81DA0 ALA 278 ENGINEERED MUTATION SEQADV 6W34 SER B -2 UNP Q81DA0 EXPRESSION TAG SEQADV 6W34 ASN B -1 UNP Q81DA0 EXPRESSION TAG SEQADV 6W34 ALA B 0 UNP Q81DA0 EXPRESSION TAG SEQADV 6W34 THR B 278 UNP Q81DA0 ALA 278 ENGINEERED MUTATION SEQRES 1 A 315 SER ASN ALA MET GLU GLY MET MET ILE LEU LYS ASN LYS SEQRES 2 A 315 ARG MET LEU LYS ILE GLY ILE CYS VAL GLY ILE LEU GLY SEQRES 3 A 315 LEU SER ILE THR SER LEU GLU ALA PHE THR GLY GLY ALA SEQRES 4 A 315 LEU GLN VAL GLU ALA LYS GLU LYS THR GLY GLN VAL LYS SEQRES 5 A 315 HIS LYS ASN GLN ALA THR HIS LYS GLU PHE SER GLN LEU SEQRES 6 A 315 GLU LYS LYS PHE ASP ALA ARG LEU GLY VAL TYR ALA ILE SEQRES 7 A 315 ASP THR GLY THR ASN GLN THR ILE SER TYR ARG SER ASN SEQRES 8 A 315 GLU ARG PHE ALA PHE ALA SER THR TYR LYS ALA LEU ALA SEQRES 9 A 315 ALA GLY VAL LEU LEU GLN GLN ASN SER ILE ASP SER LEU SEQRES 10 A 315 ASN GLU VAL ILE THR TYR THR LYS GLU ASP LEU VAL ASP SEQRES 11 A 315 TYR SER PRO VAL THR GLU LYS HIS VAL ASP THR GLY MET SEQRES 12 A 315 LYS LEU GLY GLU ILE ALA GLU ALA ALA VAL ARG SER SER SEQRES 13 A 315 ASP ASN THR ALA GLY ASN ILE LEU PHE ASN LYS ILE GLY SEQRES 14 A 315 GLY PRO LYS GLY TYR GLU LYS ALA LEU ARG HIS MET GLY SEQRES 15 A 315 ASP ARG ILE THR MET SER ASP ARG PHE GLU THR GLU LEU SEQRES 16 A 315 ASN GLU ALA ILE PRO GLY ASP ILE ARG ASP THR SER THR SEQRES 17 A 315 ALA LYS ALA ILE ALA THR ASN LEU LYS ALA PHE THR VAL SEQRES 18 A 315 GLY ASN ALA LEU PRO ALA GLU LYS ARG LYS ILE LEU THR SEQRES 19 A 315 GLU TRP MET LYS GLY ASN ALA THR GLY ASP LYS LEU ILE SEQRES 20 A 315 ARG ALA GLY VAL PRO THR ASP TRP VAL VAL GLY ASP LYS SEQRES 21 A 315 SER GLY ALA GLY SER TYR GLY THR ARG ASN ASP ILE ALA SEQRES 22 A 315 ILE VAL TRP PRO PRO ASN ARG THR PRO ILE ILE ILE ALA SEQRES 23 A 315 ILE LEU SER SER LYS ASP GLU LYS GLU ALA THR TYR ASP SEQRES 24 A 315 ASN GLN LEU ILE ALA GLU ALA THR GLU VAL ILE VAL LYS SEQRES 25 A 315 ALA LEU LYS SEQRES 1 B 315 SER ASN ALA MET GLU GLY MET MET ILE LEU LYS ASN LYS SEQRES 2 B 315 ARG MET LEU LYS ILE GLY ILE CYS VAL GLY ILE LEU GLY SEQRES 3 B 315 LEU SER ILE THR SER LEU GLU ALA PHE THR GLY GLY ALA SEQRES 4 B 315 LEU GLN VAL GLU ALA LYS GLU LYS THR GLY GLN VAL LYS SEQRES 5 B 315 HIS LYS ASN GLN ALA THR HIS LYS GLU PHE SER GLN LEU SEQRES 6 B 315 GLU LYS LYS PHE ASP ALA ARG LEU GLY VAL TYR ALA ILE SEQRES 7 B 315 ASP THR GLY THR ASN GLN THR ILE SER TYR ARG SER ASN SEQRES 8 B 315 GLU ARG PHE ALA PHE ALA SER THR TYR LYS ALA LEU ALA SEQRES 9 B 315 ALA GLY VAL LEU LEU GLN GLN ASN SER ILE ASP SER LEU SEQRES 10 B 315 ASN GLU VAL ILE THR TYR THR LYS GLU ASP LEU VAL ASP SEQRES 11 B 315 TYR SER PRO VAL THR GLU LYS HIS VAL ASP THR GLY MET SEQRES 12 B 315 LYS LEU GLY GLU ILE ALA GLU ALA ALA VAL ARG SER SER SEQRES 13 B 315 ASP ASN THR ALA GLY ASN ILE LEU PHE ASN LYS ILE GLY SEQRES 14 B 315 GLY PRO LYS GLY TYR GLU LYS ALA LEU ARG HIS MET GLY SEQRES 15 B 315 ASP ARG ILE THR MET SER ASP ARG PHE GLU THR GLU LEU SEQRES 16 B 315 ASN GLU ALA ILE PRO GLY ASP ILE ARG ASP THR SER THR SEQRES 17 B 315 ALA LYS ALA ILE ALA THR ASN LEU LYS ALA PHE THR VAL SEQRES 18 B 315 GLY ASN ALA LEU PRO ALA GLU LYS ARG LYS ILE LEU THR SEQRES 19 B 315 GLU TRP MET LYS GLY ASN ALA THR GLY ASP LYS LEU ILE SEQRES 20 B 315 ARG ALA GLY VAL PRO THR ASP TRP VAL VAL GLY ASP LYS SEQRES 21 B 315 SER GLY ALA GLY SER TYR GLY THR ARG ASN ASP ILE ALA SEQRES 22 B 315 ILE VAL TRP PRO PRO ASN ARG THR PRO ILE ILE ILE ALA SEQRES 23 B 315 ILE LEU SER SER LYS ASP GLU LYS GLU ALA THR TYR ASP SEQRES 24 B 315 ASN GLN LEU ILE ALA GLU ALA THR GLU VAL ILE VAL LYS SEQRES 25 B 315 ALA LEU LYS HET SO4 A 401 5 HET CL A 402 1 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET SO4 B 401 5 HET EDO B 402 4 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 CL CL 1- FORMUL 5 EDO 4(C2 H6 O2) FORMUL 10 HOH *309(H2 O) HELIX 1 AA1 THR A 55 PHE A 66 1 12 HELIX 2 AA2 THR A 96 ASN A 109 1 14 HELIX 3 AA3 ILE A 111 ASN A 115 5 5 HELIX 4 AA4 THR A 121 LEU A 125 5 5 HELIX 5 AA5 VAL A 131 HIS A 135 5 5 HELIX 6 AA6 LEU A 142 SER A 153 1 12 HELIX 7 AA7 ASP A 154 ILE A 165 1 12 HELIX 8 AA8 GLY A 166 MET A 178 1 13 HELIX 9 AA9 THR A 190 GLU A 194 5 5 HELIX 10 AB1 THR A 205 VAL A 218 1 14 HELIX 11 AB2 PRO A 223 LYS A 235 1 13 HELIX 12 AB3 ASN A 237 ASP A 241 5 5 HELIX 13 AB4 LEU A 243 VAL A 248 1 6 HELIX 14 AB5 ASP A 296 LEU A 311 1 16 HELIX 15 AB6 GLN B 53 ASP B 67 1 15 HELIX 16 AB7 THR B 96 ASN B 109 1 14 HELIX 17 AB8 ILE B 111 ASN B 115 5 5 HELIX 18 AB9 THR B 121 LEU B 125 5 5 HELIX 19 AC1 VAL B 131 VAL B 136 5 6 HELIX 20 AC2 LEU B 142 SER B 153 1 12 HELIX 21 AC3 ASP B 154 ILE B 165 1 12 HELIX 22 AC4 GLY B 166 HIS B 177 1 12 HELIX 23 AC5 THR B 190 GLU B 194 5 5 HELIX 24 AC6 ALA B 206 VAL B 218 1 13 HELIX 25 AC7 PRO B 223 LYS B 235 1 13 HELIX 26 AC8 ASN B 237 ASP B 241 5 5 HELIX 27 AC9 LEU B 243 VAL B 248 5 6 HELIX 28 AD1 ASP B 296 LEU B 311 1 16 SHEET 1 AA1 5 THR A 82 TYR A 85 0 SHEET 2 AA1 5 ARG A 69 ASP A 76 -1 N VAL A 72 O TYR A 85 SHEET 3 AA1 5 ILE A 280 SER A 287 -1 O LEU A 285 N GLY A 71 SHEET 4 AA1 5 THR A 265 TRP A 273 -1 N ALA A 270 O ILE A 282 SHEET 5 AA1 5 VAL A 253 GLY A 261 -1 N GLY A 255 O ILE A 271 SHEET 1 AA2 2 PHE A 91 ALA A 92 0 SHEET 2 AA2 2 THR A 203 SER A 204 -1 O SER A 204 N PHE A 91 SHEET 1 AA3 2 VAL A 117 ILE A 118 0 SHEET 2 AA3 2 MET A 140 LYS A 141 -1 O MET A 140 N ILE A 118 SHEET 1 AA4 5 THR B 82 TYR B 85 0 SHEET 2 AA4 5 ARG B 69 ASP B 76 -1 N VAL B 72 O TYR B 85 SHEET 3 AA4 5 ILE B 280 SER B 287 -1 O SER B 287 N ARG B 69 SHEET 4 AA4 5 THR B 265 TRP B 273 -1 N VAL B 272 O ILE B 280 SHEET 5 AA4 5 VAL B 253 GLY B 261 -1 N VAL B 253 O TRP B 273 SHEET 1 AA5 2 ARG B 90 ALA B 92 0 SHEET 2 AA5 2 THR B 203 THR B 205 -1 O SER B 204 N PHE B 91 SHEET 1 AA6 2 VAL B 117 ILE B 118 0 SHEET 2 AA6 2 MET B 140 LYS B 141 -1 O MET B 140 N ILE B 118 CISPEP 1 GLU A 189 THR A 190 0 2.47 CISPEP 2 GLU B 189 THR B 190 0 4.44 SITE 1 AC1 9 SER A 95 SER A 153 LYS A 257 SER A 258 SITE 2 AC1 9 GLY A 259 ALA A 260 ARG A 266 HOH A 564 SITE 3 AC1 9 HOH A 641 SITE 1 AC2 3 ARG A 86 ASN A 88 LYS B 164 SITE 1 AC3 3 HIS A 56 TYR A 85 ARG A 86 SITE 1 AC4 4 ASP A 67 LYS A 288 ASP A 289 GLU A 290 SITE 1 AC5 3 LYS A 164 GLY A 166 HOH A 513 SITE 1 AC6 9 SER B 95 SER B 153 LYS B 257 SER B 258 SITE 2 AC6 9 GLY B 259 ALA B 260 ARG B 266 HOH B 516 SITE 3 AC6 9 HOH B 575 SITE 1 AC7 3 ARG B 176 PRO B 249 THR B 250 CRYST1 42.809 43.835 68.612 94.95 91.38 92.79 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023360 0.001140 0.000666 0.00000 SCALE2 0.000000 0.022840 0.002006 0.00000 SCALE3 0.000000 0.000000 0.014635 0.00000