HEADER TRANSFERASE 09-MAR-20 6W3A
TITLE STRUCTURE OF UNPHOSPHORYLATED IRE1 IN COMPLEX WITH G-7658
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE/ENDORIBONUCLEASE IRE1;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: ENDOPLASMIC RETICULUM-TO-NUCLEUS SIGNALING 1,INOSITOL-
COMPND 5 REQUIRING PROTEIN 1,HIRE1P,IRE1-ALPHA,IRE1A;
COMPND 6 EC: 2.7.11.1,3.1.26.-;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: ERN1, IRE1;
SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM;
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108;
SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9
KEYWDS KINASE, UPR, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR E.FERRI,W.WANG,R.JOACHIM,K.MORTARA
REVDAT 4 18-OCT-23 6W3A 1 REMARK
REVDAT 3 16-JUN-21 6W3A 1 REMARK
REVDAT 2 30-DEC-20 6W3A 1 JRNL
REVDAT 1 09-DEC-20 6W3A 0
JRNL AUTH E.FERRI,A.LE THOMAS,H.A.WALLWEBER,E.S.DAY,B.T.WALTERS,
JRNL AUTH 2 S.E.KAUFMAN,M.G.BRAUN,K.R.CLARK,M.H.BERESINI,K.MORTARA,
JRNL AUTH 3 Y.A.CHEN,B.CANTER,W.PHUNG,P.S.LIU,A.LAMMENS,A.ASHKENAZI,
JRNL AUTH 4 J.RUDOLPH,W.WANG
JRNL TITL ACTIVATION OF THE IRE1 RNASE THROUGH REMODELING OF THE
JRNL TITL 2 KINASE FRONT POCKET BY ATP-COMPETITIVE LIGANDS.
JRNL REF NAT COMMUN V. 11 6387 2020
JRNL REFN ESSN 2041-1723
JRNL PMID 33318494
JRNL DOI 10.1038/S41467-020-19974-5
REMARK 2
REMARK 2 RESOLUTION. 2.61 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.9_1692
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.61
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.12
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 77.4
REMARK 3 NUMBER OF REFLECTIONS : 25308
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.249
REMARK 3 R VALUE (WORKING SET) : 0.247
REMARK 3 FREE R VALUE : 0.290
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.260
REMARK 3 FREE R VALUE TEST SET COUNT : 1331
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 2.6991 - 2.6060 0.33 190 5 0.3206 0.3349
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.380
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 46.77
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.81
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : NULL NULL
REMARK 3 ANGLE : NULL NULL
REMARK 3 CHIRALITY : NULL NULL
REMARK 3 PLANARITY : NULL NULL
REMARK 3 DIHEDRAL : NULL NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: ALL
REMARK 3 ORIGIN FOR THE GROUP (A): 96.4536 -8.1553 31.5024
REMARK 3 T TENSOR
REMARK 3 T11: -0.1713 T22: -0.5493
REMARK 3 T33: -0.1384 T12: -0.1286
REMARK 3 T13: -0.0966 T23: -0.2809
REMARK 3 L TENSOR
REMARK 3 L11: 1.1855 L22: 1.3403
REMARK 3 L33: 0.1584 L12: -0.4946
REMARK 3 L13: 0.2907 L23: -0.2544
REMARK 3 S TENSOR
REMARK 3 S11: 0.2435 S12: 0.9255 S13: 0.1089
REMARK 3 S21: -0.2707 S22: -0.5510 S23: -0.0988
REMARK 3 S31: 0.2642 S32: 0.2888 S33: -0.2020
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6W3A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-20.
REMARK 100 THE DEPOSITION ID IS D_1000246915.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 31-JAN-18
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SSRL
REMARK 200 BEAMLINE : BL12-2
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25334
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.606
REMARK 200 RESOLUTION RANGE LOW (A) : 82.013
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 91.5
REMARK 200 DATA REDUNDANCY : 6.700
REMARK 200 R MERGE (I) : 0.14800
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.4000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.61
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.84
REMARK 200 COMPLETENESS FOR SHELL (%) : 51.0
REMARK 200 DATA REDUNDANCY IN SHELL : 7.00
REMARK 200 R MERGE FOR SHELL (I) : 1.22700
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 5HGI
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 53.20
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM FORMATE, 20 %W/V PEG
REMARK 280 3350, AND 1% CYMAL-1, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE
REMARK 280 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.55700
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.01350
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.19350
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.01350
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.55700
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.19350
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 547
REMARK 465 SER A 548
REMARK 465 SER A 549
REMARK 465 PRO A 550
REMARK 465 SER A 551
REMARK 465 LEU A 552
REMARK 465 GLU A 553
REMARK 465 GLN A 554
REMARK 465 ASP A 555
REMARK 465 ASP A 556
REMARK 465 GLY A 557
REMARK 465 ASP A 558
REMARK 465 GLU A 559
REMARK 465 GLU A 560
REMARK 465 THR A 561
REMARK 465 GLY A 580
REMARK 465 ALA A 581
REMARK 465 LYS A 656
REMARK 465 ASP A 657
REMARK 465 PHE A 658
REMARK 465 ALA A 659
REMARK 465 HIS A 660
REMARK 465 LEU A 661
REMARK 465 GLY A 662
REMARK 465 CYS A 715
REMARK 465 LYS A 716
REMARK 465 LYS A 717
REMARK 465 LEU A 718
REMARK 465 ALA A 719
REMARK 465 VAL A 720
REMARK 465 GLY A 721
REMARK 465 ARG A 722
REMARK 465 HIS A 723
REMARK 465 SER A 724
REMARK 465 PHE A 725
REMARK 465 SER A 726
REMARK 465 ARG A 727
REMARK 465 ARG A 728
REMARK 465 SER A 729
REMARK 465 GLY A 730
REMARK 465 VAL A 731
REMARK 465 PRO A 732
REMARK 465 SER A 744
REMARK 465 GLU A 745
REMARK 465 ASP A 746
REMARK 465 CYS A 747
REMARK 465 LYS A 748
REMARK 465 THR A 879
REMARK 465 ARG A 887
REMARK 465 LYS A 888
REMARK 465 PHE A 889
REMARK 465 ARG A 890
REMARK 465 THR A 891
REMARK 465 TYR A 892
REMARK 465 GLY A 923
REMARK 465 PRO A 965
REMARK 465 PRO A 966
REMARK 465 GLU A 967
REMARK 465 PRO A 968
REMARK 465 GLN A 969
REMARK 465 PRO A 970
REMARK 465 PRO A 971
REMARK 465 VAL A 972
REMARK 465 THR A 973
REMARK 465 PRO A 974
REMARK 465 ASP A 975
REMARK 465 ALA A 976
REMARK 465 LEU A 977
REMARK 465 GLY A 978
REMARK 465 ASN A 979
REMARK 465 SER A 980
REMARK 465 GLY B 547
REMARK 465 SER B 548
REMARK 465 SER B 549
REMARK 465 PRO B 550
REMARK 465 SER B 551
REMARK 465 LEU B 552
REMARK 465 GLU B 553
REMARK 465 GLN B 554
REMARK 465 ASP B 555
REMARK 465 ASP B 556
REMARK 465 GLY B 557
REMARK 465 ASP B 558
REMARK 465 GLU B 559
REMARK 465 GLU B 560
REMARK 465 THR B 561
REMARK 465 GLY B 580
REMARK 465 ALA B 581
REMARK 465 GLU B 582
REMARK 465 LYS B 656
REMARK 465 LYS B 716
REMARK 465 LYS B 717
REMARK 465 LEU B 718
REMARK 465 ALA B 719
REMARK 465 VAL B 720
REMARK 465 GLY B 721
REMARK 465 ARG B 722
REMARK 465 HIS B 723
REMARK 465 SER B 724
REMARK 465 PHE B 725
REMARK 465 SER B 726
REMARK 465 ARG B 727
REMARK 465 ARG B 728
REMARK 465 SER B 729
REMARK 465 GLY B 730
REMARK 465 VAL B 731
REMARK 465 PRO B 732
REMARK 465 GLU B 745
REMARK 465 ASP B 746
REMARK 465 CYS B 747
REMARK 465 LYS B 748
REMARK 465 LEU B 886
REMARK 465 ARG B 887
REMARK 465 LYS B 888
REMARK 465 PHE B 889
REMARK 465 ARG B 890
REMARK 465 THR B 891
REMARK 465 TYR B 892
REMARK 465 PRO B 965
REMARK 465 PRO B 966
REMARK 465 GLU B 967
REMARK 465 PRO B 968
REMARK 465 GLN B 969
REMARK 465 PRO B 970
REMARK 465 PRO B 971
REMARK 465 VAL B 972
REMARK 465 THR B 973
REMARK 465 PRO B 974
REMARK 465 ASP B 975
REMARK 465 ALA B 976
REMARK 465 LEU B 977
REMARK 465 GLY B 978
REMARK 465 ASN B 979
REMARK 465 SER B 980
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 VAL A 564 CG1 CG2
REMARK 470 VAL A 566 CG1 CG2
REMARK 470 LYS A 568 CG CD CE NZ
REMARK 470 LYS A 574 CG CD CE NZ
REMARK 470 GLU A 582 CG CD OE1 OE2
REMARK 470 ILE A 585 CG1 CG2 CD1
REMARK 470 ARG A 588 CG CD NE CZ NH1 NH2
REMARK 470 MET A 590 CE
REMARK 470 ARG A 600 CG CD NE CZ NH1 NH2
REMARK 470 LEU A 602 CG CD1 CD2
REMARK 470 GLU A 604 CG CD OE1 OE2
REMARK 470 SER A 607 OG
REMARK 470 LYS A 633 CG CD CE NZ
REMARK 470 ASP A 634 CG OD1 OD2
REMARK 470 ARG A 635 CG CD NE CZ NH1 NH2
REMARK 470 GLN A 636 CG CD OE1 NE2
REMARK 470 PHE A 637 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 GLN A 655 CG CD OE1 NE2
REMARK 470 LEU A 663 CG CD1 CD2
REMARK 470 ARG A 687 NH1 NH2
REMARK 470 GLU A 735 CG CD OE1 OE2
REMARK 470 ASN A 750 CG OD1 ND2
REMARK 470 ASP A 793 CG OD1 OD2
REMARK 470 GLU A 798 CG CD OE1 OE2
REMARK 470 LYS A 811 CE NZ
REMARK 470 GLN A 818 CG CD OE1 NE2
REMARK 470 LYS A 851 CG CD CE NZ
REMARK 470 ASP A 855 CG OD1 OD2
REMARK 470 LYS A 860 CG CD CE NZ
REMARK 470 ARG A 867 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 871 CG CD CE NZ
REMARK 470 MET A 872 CG SD CE
REMARK 470 GLU A 876 CG CD OE1 OE2
REMARK 470 VAL A 880 CG1 CG2
REMARK 470 LEU A 882 CG CD1 CD2
REMARK 470 GLN A 883 CG CD OE1 NE2
REMARK 470 THR A 884 OG1 CG2
REMARK 470 ASP A 885 CG OD1 OD2
REMARK 470 LYS A 893 CG CD CE NZ
REMARK 470 ARG A 902 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 913 CG CD OE1 OE2
REMARK 470 GLU A 917 CG CD OE1 OE2
REMARK 470 GLU A 920 CG CD OE1 OE2
REMARK 470 LEU A 925 CG CD1 CD2
REMARK 470 GLU A 964 CG CD OE1 OE2
REMARK 470 VAL B 564 CG1 CG2
REMARK 470 LYS B 574 CG CD CE NZ
REMARK 470 VAL B 576 CG1 CG2
REMARK 470 HIS B 579 CG ND1 CD2 CE1 NE2
REMARK 470 THR B 584 OG1 CG2
REMARK 470 ILE B 585 CG1 CG2 CD1
REMARK 470 MET B 590 CE
REMARK 470 ILE B 601 CG1 CG2 CD1
REMARK 470 GLU B 604 CG CD OE1 OE2
REMARK 470 SER B 607 OG
REMARK 470 PHE B 608 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 GLU B 618 CG CD OE1 OE2
REMARK 470 LYS B 633 CG CD CE NZ
REMARK 470 GLN B 636 CG CD OE1 NE2
REMARK 470 PHE B 637 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 GLN B 655 CG CD OE1 NE2
REMARK 470 ASP B 657 CG OD1 OD2
REMARK 470 HIS B 660 CG ND1 CD2 CE1 NE2
REMARK 470 ARG B 687 NH1 NH2
REMARK 470 CYS B 715 SG
REMARK 470 GLU B 749 CG CD OE1 OE2
REMARK 470 GLU B 798 CG CD OE1 OE2
REMARK 470 LYS B 799 CG CD CE NZ
REMARK 470 LYS B 811 CE NZ
REMARK 470 GLN B 818 CG CD OE1 NE2
REMARK 470 LYS B 819 CE NZ
REMARK 470 LYS B 851 CG CD CE NZ
REMARK 470 ASP B 855 CG OD1 OD2
REMARK 470 LYS B 860 CG CD CE NZ
REMARK 470 ARG B 864 CG CD NE CZ NH1 NH2
REMARK 470 ARG B 867 CG CD NE CZ NH1 NH2
REMARK 470 MET B 872 CG SD CE
REMARK 470 ARG B 875 CG CD NE CZ NH1 NH2
REMARK 470 GLU B 876 CG CD OE1 OE2
REMARK 470 ASN B 877 CG OD1 ND2
REMARK 470 VAL B 880 CG1 CG2
REMARK 470 THR B 884 OG1 CG2
REMARK 470 ASP B 885 CG OD1 OD2
REMARK 470 LYS B 893 CG CD CE NZ
REMARK 470 ARG B 898 CG CD NE CZ NH1 NH2
REMARK 470 ARG B 902 CG CD NE CZ NH1 NH2
REMARK 470 LYS B 907 CG CD CE NZ
REMARK 470 ARG B 912 CG CD NE CZ NH1 NH2
REMARK 470 GLU B 913 CG CD OE1 OE2
REMARK 470 LEU B 914 CG CD1 CD2
REMARK 470 GLU B 917 CG CD OE1 OE2
REMARK 470 ARG B 919 CG CD NE CZ NH1 NH2
REMARK 470 GLU B 920 CG CD OE1 OE2
REMARK 470 THR B 921 OG1 CG2
REMARK 470 LEU B 922 CG CD1 CD2
REMARK 470 HIS B 963 CG ND1 CD2 CE1 NE2
REMARK 470 GLU B 964 CG CD OE1 OE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 CYS A 605 16.80 -144.57
REMARK 500 GLU A 621 52.21 -97.79
REMARK 500 GLN A 636 -84.34 -121.42
REMARK 500 ARG A 687 -4.98 68.58
REMARK 500 ASP A 688 57.09 -163.73
REMARK 500 ASN A 700 41.38 -108.29
REMARK 500 ALA A 701 -10.42 71.87
REMARK 500 GLU A 735 -128.71 -119.08
REMARK 500 ASN A 750 70.33 -163.32
REMARK 500 LEU A 792 53.56 -106.91
REMARK 500 MET A 872 -59.86 68.74
REMARK 500 HIS A 963 132.17 -173.11
REMARK 500 PHE B 629 -62.18 -104.51
REMARK 500 GLU B 654 -79.23 -60.57
REMARK 500 ALA B 659 66.28 -67.48
REMARK 500 HIS B 660 -139.37 -165.12
REMARK 500 ARG B 687 -8.14 68.52
REMARK 500 ASP B 688 60.46 -168.29
REMARK 500 GLU B 735 -139.76 -111.97
REMARK 500 ARG B 864 96.28 -64.48
REMARK 500 MET B 872 -67.17 66.57
REMARK 500 GLU B 913 73.13 -108.03
REMARK 500 CYS B 951 34.60 -94.03
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SJM A 1001
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SJM B 1001
DBREF 6W3A A 547 977 UNP O75460 ERN1_HUMAN 547 977
DBREF 6W3A B 547 977 UNP O75460 ERN1_HUMAN 547 977
SEQADV 6W3A GLY A 978 UNP O75460 EXPRESSION TAG
SEQADV 6W3A ASN A 979 UNP O75460 EXPRESSION TAG
SEQADV 6W3A SER A 980 UNP O75460 EXPRESSION TAG
SEQADV 6W3A GLY B 978 UNP O75460 EXPRESSION TAG
SEQADV 6W3A ASN B 979 UNP O75460 EXPRESSION TAG
SEQADV 6W3A SER B 980 UNP O75460 EXPRESSION TAG
SEQRES 1 A 434 GLY SER SER PRO SER LEU GLU GLN ASP ASP GLY ASP GLU
SEQRES 2 A 434 GLU THR SER VAL VAL ILE VAL GLY LYS ILE SER PHE CYS
SEQRES 3 A 434 PRO LYS ASP VAL LEU GLY HIS GLY ALA GLU GLY THR ILE
SEQRES 4 A 434 VAL TYR ARG GLY MET PHE ASP ASN ARG ASP VAL ALA VAL
SEQRES 5 A 434 LYS ARG ILE LEU PRO GLU CYS PHE SER PHE ALA ASP ARG
SEQRES 6 A 434 GLU VAL GLN LEU LEU ARG GLU SER ASP GLU HIS PRO ASN
SEQRES 7 A 434 VAL ILE ARG TYR PHE CYS THR GLU LYS ASP ARG GLN PHE
SEQRES 8 A 434 GLN TYR ILE ALA ILE GLU LEU CYS ALA ALA THR LEU GLN
SEQRES 9 A 434 GLU TYR VAL GLU GLN LYS ASP PHE ALA HIS LEU GLY LEU
SEQRES 10 A 434 GLU PRO ILE THR LEU LEU GLN GLN THR THR SER GLY LEU
SEQRES 11 A 434 ALA HIS LEU HIS SER LEU ASN ILE VAL HIS ARG ASP LEU
SEQRES 12 A 434 LYS PRO HIS ASN ILE LEU ILE SER MET PRO ASN ALA HIS
SEQRES 13 A 434 GLY LYS ILE LYS ALA MET ILE SER ASP PHE GLY LEU CYS
SEQRES 14 A 434 LYS LYS LEU ALA VAL GLY ARG HIS SER PHE SER ARG ARG
SEQRES 15 A 434 SER GLY VAL PRO GLY THR GLU GLY TRP ILE ALA PRO GLU
SEQRES 16 A 434 MET LEU SER GLU ASP CYS LYS GLU ASN PRO THR TYR THR
SEQRES 17 A 434 VAL ASP ILE PHE SER ALA GLY CYS VAL PHE TYR TYR VAL
SEQRES 18 A 434 ILE SER GLU GLY SER HIS PRO PHE GLY LYS SER LEU GLN
SEQRES 19 A 434 ARG GLN ALA ASN ILE LEU LEU GLY ALA CYS SER LEU ASP
SEQRES 20 A 434 CYS LEU HIS PRO GLU LYS HIS GLU ASP VAL ILE ALA ARG
SEQRES 21 A 434 GLU LEU ILE GLU LYS MET ILE ALA MET ASP PRO GLN LYS
SEQRES 22 A 434 ARG PRO SER ALA LYS HIS VAL LEU LYS HIS PRO PHE PHE
SEQRES 23 A 434 TRP SER LEU GLU LYS GLN LEU GLN PHE PHE GLN ASP VAL
SEQRES 24 A 434 SER ASP ARG ILE GLU LYS GLU SER LEU ASP GLY PRO ILE
SEQRES 25 A 434 VAL LYS GLN LEU GLU ARG GLY GLY ARG ALA VAL VAL LYS
SEQRES 26 A 434 MET ASP TRP ARG GLU ASN ILE THR VAL PRO LEU GLN THR
SEQRES 27 A 434 ASP LEU ARG LYS PHE ARG THR TYR LYS GLY GLY SER VAL
SEQRES 28 A 434 ARG ASP LEU LEU ARG ALA MET ARG ASN LYS LYS HIS HIS
SEQRES 29 A 434 TYR ARG GLU LEU PRO ALA GLU VAL ARG GLU THR LEU GLY
SEQRES 30 A 434 SER LEU PRO ASP ASP PHE VAL CYS TYR PHE THR SER ARG
SEQRES 31 A 434 PHE PRO HIS LEU LEU ALA HIS THR TYR ARG ALA MET GLU
SEQRES 32 A 434 LEU CYS SER HIS GLU ARG LEU PHE GLN PRO TYR TYR PHE
SEQRES 33 A 434 HIS GLU PRO PRO GLU PRO GLN PRO PRO VAL THR PRO ASP
SEQRES 34 A 434 ALA LEU GLY ASN SER
SEQRES 1 B 434 GLY SER SER PRO SER LEU GLU GLN ASP ASP GLY ASP GLU
SEQRES 2 B 434 GLU THR SER VAL VAL ILE VAL GLY LYS ILE SER PHE CYS
SEQRES 3 B 434 PRO LYS ASP VAL LEU GLY HIS GLY ALA GLU GLY THR ILE
SEQRES 4 B 434 VAL TYR ARG GLY MET PHE ASP ASN ARG ASP VAL ALA VAL
SEQRES 5 B 434 LYS ARG ILE LEU PRO GLU CYS PHE SER PHE ALA ASP ARG
SEQRES 6 B 434 GLU VAL GLN LEU LEU ARG GLU SER ASP GLU HIS PRO ASN
SEQRES 7 B 434 VAL ILE ARG TYR PHE CYS THR GLU LYS ASP ARG GLN PHE
SEQRES 8 B 434 GLN TYR ILE ALA ILE GLU LEU CYS ALA ALA THR LEU GLN
SEQRES 9 B 434 GLU TYR VAL GLU GLN LYS ASP PHE ALA HIS LEU GLY LEU
SEQRES 10 B 434 GLU PRO ILE THR LEU LEU GLN GLN THR THR SER GLY LEU
SEQRES 11 B 434 ALA HIS LEU HIS SER LEU ASN ILE VAL HIS ARG ASP LEU
SEQRES 12 B 434 LYS PRO HIS ASN ILE LEU ILE SER MET PRO ASN ALA HIS
SEQRES 13 B 434 GLY LYS ILE LYS ALA MET ILE SER ASP PHE GLY LEU CYS
SEQRES 14 B 434 LYS LYS LEU ALA VAL GLY ARG HIS SER PHE SER ARG ARG
SEQRES 15 B 434 SER GLY VAL PRO GLY THR GLU GLY TRP ILE ALA PRO GLU
SEQRES 16 B 434 MET LEU SER GLU ASP CYS LYS GLU ASN PRO THR TYR THR
SEQRES 17 B 434 VAL ASP ILE PHE SER ALA GLY CYS VAL PHE TYR TYR VAL
SEQRES 18 B 434 ILE SER GLU GLY SER HIS PRO PHE GLY LYS SER LEU GLN
SEQRES 19 B 434 ARG GLN ALA ASN ILE LEU LEU GLY ALA CYS SER LEU ASP
SEQRES 20 B 434 CYS LEU HIS PRO GLU LYS HIS GLU ASP VAL ILE ALA ARG
SEQRES 21 B 434 GLU LEU ILE GLU LYS MET ILE ALA MET ASP PRO GLN LYS
SEQRES 22 B 434 ARG PRO SER ALA LYS HIS VAL LEU LYS HIS PRO PHE PHE
SEQRES 23 B 434 TRP SER LEU GLU LYS GLN LEU GLN PHE PHE GLN ASP VAL
SEQRES 24 B 434 SER ASP ARG ILE GLU LYS GLU SER LEU ASP GLY PRO ILE
SEQRES 25 B 434 VAL LYS GLN LEU GLU ARG GLY GLY ARG ALA VAL VAL LYS
SEQRES 26 B 434 MET ASP TRP ARG GLU ASN ILE THR VAL PRO LEU GLN THR
SEQRES 27 B 434 ASP LEU ARG LYS PHE ARG THR TYR LYS GLY GLY SER VAL
SEQRES 28 B 434 ARG ASP LEU LEU ARG ALA MET ARG ASN LYS LYS HIS HIS
SEQRES 29 B 434 TYR ARG GLU LEU PRO ALA GLU VAL ARG GLU THR LEU GLY
SEQRES 30 B 434 SER LEU PRO ASP ASP PHE VAL CYS TYR PHE THR SER ARG
SEQRES 31 B 434 PHE PRO HIS LEU LEU ALA HIS THR TYR ARG ALA MET GLU
SEQRES 32 B 434 LEU CYS SER HIS GLU ARG LEU PHE GLN PRO TYR TYR PHE
SEQRES 33 B 434 HIS GLU PRO PRO GLU PRO GLN PRO PRO VAL THR PRO ASP
SEQRES 34 B 434 ALA LEU GLY ASN SER
HET SJM A1001 38
HET SJM B1001 38
HETNAM SJM ~{N}-[6-METHYL-5-[3-[2-[[(3~{S})-PIPERIDIN-3-
HETNAM 2 SJM YL]AMINO]PYRIMIDIN-4-YL]PYRIDIN-2-YL]OXY-NAPHTHALEN-1-
HETNAM 3 SJM YL]BUT-2-YNAMIDE
FORMUL 3 SJM 2(C29 H28 N6 O2)
FORMUL 5 HOH *42(H2 O)
HELIX 1 AA1 LEU A 602 GLU A 604 5 3
HELIX 2 AA2 CYS A 605 ASP A 620 1 16
HELIX 3 AA3 LEU A 649 GLU A 654 1 6
HELIX 4 AA4 GLU A 664 LEU A 682 1 19
HELIX 5 AA5 ALA A 739 LEU A 743 5 5
HELIX 6 AA6 TYR A 753 SER A 769 1 17
HELIX 7 AA7 LYS A 777 LEU A 779 5 3
HELIX 8 AA8 GLN A 780 LEU A 787 1 8
HELIX 9 AA9 LYS A 799 ILE A 813 1 15
HELIX 10 AB1 ASP A 816 ARG A 820 5 5
HELIX 11 AB2 SER A 822 LYS A 828 1 7
HELIX 12 AB3 HIS A 829 TRP A 833 5 5
HELIX 13 AB4 SER A 834 ILE A 849 1 16
HELIX 14 AB5 GLY A 856 ARG A 864 1 9
HELIX 15 AB6 GLY A 865 VAL A 870 1 6
HELIX 16 AB7 ASP A 873 ASN A 877 5 5
HELIX 17 AB8 VAL A 880 THR A 884 5 5
HELIX 18 AB9 SER A 896 HIS A 910 1 15
HELIX 19 AC1 PRO A 915 LEU A 922 1 8
HELIX 20 AC2 PRO A 926 PHE A 937 1 12
HELIX 21 AC3 HIS A 939 MET A 948 1 10
HELIX 22 AC4 GLU A 949 SER A 952 5 4
HELIX 23 AC5 LEU B 602 GLU B 604 5 3
HELIX 24 AC6 CYS B 605 SER B 619 1 15
HELIX 25 AC7 LEU B 649 GLN B 655 1 7
HELIX 26 AC8 GLU B 664 LEU B 682 1 19
HELIX 27 AC9 ALA B 739 LEU B 743 5 5
HELIX 28 AD1 TYR B 753 SER B 769 1 17
HELIX 29 AD2 LYS B 777 LEU B 779 5 3
HELIX 30 AD3 GLN B 780 LEU B 787 1 8
HELIX 31 AD4 LYS B 799 ILE B 813 1 15
HELIX 32 AD5 ASP B 816 ARG B 820 5 5
HELIX 33 AD6 SER B 822 HIS B 829 1 8
HELIX 34 AD7 PRO B 830 TRP B 833 5 4
HELIX 35 AD8 SER B 834 ILE B 849 1 16
HELIX 36 AD9 GLY B 865 VAL B 870 1 6
HELIX 37 AE1 ASP B 873 ILE B 878 1 6
HELIX 38 AE2 SER B 896 HIS B 910 1 15
HELIX 39 AE3 PRO B 915 GLY B 923 1 9
HELIX 40 AE4 PRO B 926 SER B 935 1 10
HELIX 41 AE5 HIS B 939 MET B 948 1 10
HELIX 42 AE6 GLU B 949 SER B 952 5 4
SHEET 1 AA1 6 VAL A 564 ILE A 565 0
SHEET 2 AA1 6 ILE A 569 GLY A 578 -1 O PHE A 571 N VAL A 564
SHEET 3 AA1 6 ILE A 585 PHE A 591 -1 O VAL A 586 N LEU A 577
SHEET 4 AA1 6 ARG A 594 ILE A 601 -1 O ARG A 600 N ILE A 585
SHEET 5 AA1 6 GLN A 638 GLU A 643 -1 O ILE A 642 N ALA A 597
SHEET 6 AA1 6 TYR A 628 LYS A 633 -1 N CYS A 630 O ALA A 641
SHEET 1 AA2 3 ALA A 647 THR A 648 0
SHEET 2 AA2 3 LEU A 695 ILE A 696 -1 O ILE A 696 N ALA A 647
SHEET 3 AA2 3 ALA A 707 MET A 708 -1 O MET A 708 N LEU A 695
SHEET 1 AA3 6 VAL B 564 VAL B 566 0
SHEET 2 AA3 6 ILE B 569 GLY B 578 -1 O ILE B 569 N VAL B 566
SHEET 3 AA3 6 ILE B 585 PHE B 591 -1 O VAL B 586 N LEU B 577
SHEET 4 AA3 6 ARG B 594 ILE B 601 -1 O VAL B 598 N TYR B 587
SHEET 5 AA3 6 GLN B 638 GLU B 643 -1 O ILE B 640 N LYS B 599
SHEET 6 AA3 6 TYR B 628 GLU B 632 -1 N CYS B 630 O ALA B 641
SHEET 1 AA4 3 ALA B 647 THR B 648 0
SHEET 2 AA4 3 LEU B 695 ILE B 696 -1 O ILE B 696 N ALA B 647
SHEET 3 AA4 3 ALA B 707 MET B 708 -1 O MET B 708 N LEU B 695
CISPEP 1 LEU B 925 PRO B 926 0 -5.01
SITE 1 AC1 15 LEU A 577 ALA A 597 LYS A 599 GLU A 612
SITE 2 AC1 15 LEU A 616 ILE A 642 GLU A 643 LEU A 644
SITE 3 AC1 15 CYS A 645 ALA A 646 GLU A 651 SER A 710
SITE 4 AC1 15 ASP A 711 PHE A 712 LEU A 714
SITE 1 AC2 15 VAL B 586 ALA B 597 LYS B 599 GLU B 612
SITE 2 AC2 15 ILE B 642 GLU B 643 CYS B 645 ALA B 646
SITE 3 AC2 15 ALA B 647 GLU B 651 HIS B 692 SER B 710
SITE 4 AC2 15 ASP B 711 PHE B 712 LEU B 714
CRYST1 77.114 82.387 164.027 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012968 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012138 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006097 0.00000