HEADER RNA 09-MAR-20 6W3M TITLE SOLUTION NMR STRUCTURE OF 5'UTR STEM LOOP B IN DENV4 FLAVIVIRUS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (41-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 4 PHILIPPINES/H241/1956; SOURCE 3 ORGANISM_TAXID: 408686; SOURCE 4 EXPRESSION_SYSTEM: DENGUE VIRUS 4 PHILIPPINES/H241/1956; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 408686 KEYWDS RNA, 5'UTR, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER KEYWDS 2 FOR INFECTIOUS DISEASE, SSGCID EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.SHARMA,G.VARANI,SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS AUTHOR 2 DISEASE (SSGCID) REVDAT 4 14-JUN-23 6W3M 1 REMARK REVDAT 3 07-OCT-20 6W3M 1 KEYWDS AUTHOR REVDAT 2 30-SEP-20 6W3M 1 JRNL REVDAT 1 23-SEP-20 6W3M 0 JRNL AUTH S.SHARMA,G.VARANI JRNL TITL NMR STRUCTURE OF DENGUE WEST NILE VIRUSES STEM-LOOP B: A KEY JRNL TITL 2 CIS-ACTING ELEMENT FOR FLAVIVIRUS REPLICATION. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 531 522 2020 JRNL REFN ESSN 1090-2104 JRNL PMID 32807496 JRNL DOI 10.1016/J.BBRC.2020.07.115 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6W3M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247462. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.8 MM N15_C13 DENV4, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D 1H-1H NOESY; 2D 1H- REMARK 210 1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 G A 19 C1' - O4' - C4' ANGL. DEV. = -4.3 DEGREES REMARK 500 2 A A 23 C1' - O4' - C4' ANGL. DEV. = -4.7 DEGREES REMARK 500 2 G A 30 C1' - O4' - C4' ANGL. DEV. = -5.0 DEGREES REMARK 500 4 G A 19 C1' - O4' - C4' ANGL. DEV. = -4.5 DEGREES REMARK 500 4 A A 23 C1' - O4' - C4' ANGL. DEV. = -6.8 DEGREES REMARK 500 4 G A 30 C1' - O4' - C4' ANGL. DEV. = -5.9 DEGREES REMARK 500 5 A A 23 C1' - O4' - C4' ANGL. DEV. = -5.8 DEGREES REMARK 500 5 G A 30 C1' - O4' - C4' ANGL. DEV. = -5.3 DEGREES REMARK 500 6 A A 23 C1' - O4' - C4' ANGL. DEV. = -5.8 DEGREES REMARK 500 7 A A 23 C1' - O4' - C4' ANGL. DEV. = -5.7 DEGREES REMARK 500 7 G A 30 C1' - O4' - C4' ANGL. DEV. = -6.2 DEGREES REMARK 500 8 A A 23 C1' - O4' - C4' ANGL. DEV. = -5.9 DEGREES REMARK 500 8 G A 30 C1' - O4' - C4' ANGL. DEV. = -5.7 DEGREES REMARK 500 9 G A 30 C1' - O4' - C4' ANGL. DEV. = -6.5 DEGREES REMARK 500 10 G A 19 C1' - O4' - C4' ANGL. DEV. = -4.4 DEGREES REMARK 500 10 A A 23 C1' - O4' - C4' ANGL. DEV. = -6.9 DEGREES REMARK 500 10 G A 30 C1' - O4' - C4' ANGL. DEV. = -5.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 28094 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF 5'UTR STEM LOOP B IN DENV4 FLAVIVIRUS. DBREF 6W3M A 1 41 PDB 6W3M 6W3M 1 41 SEQRES 1 A 41 G G U U U G U U U G A A U SEQRES 2 A 41 A G A G A G C A G A U C U SEQRES 3 A 41 C U G G A A A A A U G A A SEQRES 4 A 41 C C CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1