HEADER SIGNALING PROTEIN 09-MAR-20 6W3X TITLE CRYSTAL STRUCTURE OF LIGAND-BINDING DOMAIN OF CAMPYLOBACTER JEJUNI TITLE 2 CHEMORECEPTOR TLP3 IN COMPLEX WITH L-VALINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYL-ACCEPTING CHEMOTAXIS PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI; SOURCE 3 ORGANISM_TAXID: 197; SOURCE 4 GENE: D8X59_02240; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS BACTERIAL CHEMOTAXIS, CHEMORECEPTOR, DOUBLE CACHE, LIGAND BINDING KEYWDS 2 DOMAIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.F.KHAN,M.A.MACHUCA,M.M.RAHMAN,A.ROUJEINIKOVA REVDAT 4 30-OCT-24 6W3X 1 REMARK REVDAT 3 18-OCT-23 6W3X 1 REMARK REVDAT 2 27-MAY-20 6W3X 1 JRNL REVDAT 1 20-MAY-20 6W3X 0 JRNL AUTH M.F.KHAN,M.A.MACHUCA,M.M.RAHMAN,C.KOC,R.S.NORTON,B.J.SMITH, JRNL AUTH 2 A.ROUJEINIKOVA JRNL TITL STRUCTURE-ACTIVITY RELATIONSHIP STUDY REVEALS THE MOLECULAR JRNL TITL 2 BASIS FOR SPECIFIC SENSING OF HYDROPHOBIC AMINO ACIDS BY JRNL TITL 3 THECAMPYLOBACTER JEJUNICHEMORECEPTOR TLP3. JRNL REF BIOMOLECULES V. 10 2020 JRNL REFN ESSN 2218-273X JRNL PMID 32403336 JRNL DOI 10.3390/BIOM10050744 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 98569 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.115 REMARK 3 R VALUE (WORKING SET) : 0.113 REMARK 3 FREE R VALUE : 0.154 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5209 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6777 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.1780 REMARK 3 BIN FREE R VALUE SET COUNT : 343 REMARK 3 BIN FREE R VALUE : 0.2300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3968 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 902 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.21000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.054 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.052 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.971 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4617 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4428 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6342 ; 1.642 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10251 ; 0.856 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 608 ; 6.475 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 208 ;34.988 ;26.010 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 831 ;11.605 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;14.821 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 727 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5483 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1046 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 9043 ; 5.352 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 451 ;34.778 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 9372 ;14.532 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6W3X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247550. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103884 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 28.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4XMR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, SODIUM CITRATE AND AMMONIUM REMARK 280 SULPHATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 68.77000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 133 REMARK 465 PRO A 286 REMARK 465 ILE A 287 REMARK 465 TYR A 288 REMARK 465 LYS A 289 REMARK 465 ALA A 290 REMARK 465 ASN B 133 REMARK 465 ASP B 134 REMARK 465 ALA B 135 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 134 CG OD1 OD2 REMARK 470 ASP A 236 O REMARK 470 LYS B 136 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 69 O HOH B 401 1.73 REMARK 500 NZ LYS A 285 O HOH A 401 1.76 REMARK 500 OE2 GLU B 278 O HOH B 402 1.84 REMARK 500 OE1 GLN B 89 O HOH B 403 1.87 REMARK 500 CG1 VAL B 171 O HOH B 468 1.91 REMARK 500 O HOH B 402 O HOH B 405 1.92 REMARK 500 O HOH B 747 O HOH B 878 1.92 REMARK 500 O HOH A 516 O HOH A 674 1.92 REMARK 500 O HOH A 615 O HOH B 863 1.92 REMARK 500 OG SER A 111 O HOH A 402 1.96 REMARK 500 O HOH B 622 O HOH B 773 1.97 REMARK 500 OH TYR B 272 O HOH B 404 1.98 REMARK 500 O HOH A 697 O HOH A 796 1.98 REMARK 500 O HOH B 692 O HOH B 837 2.02 REMARK 500 O HOH B 793 O HOH B 807 2.05 REMARK 500 CE LYS B 285 O HOH B 645 2.07 REMARK 500 O HOH B 742 O HOH B 814 2.08 REMARK 500 N ASP A 134 O HOH A 403 2.08 REMARK 500 O HOH B 528 O HOH B 554 2.09 REMARK 500 O HOH A 614 O HOH A 743 2.11 REMARK 500 O HOH B 883 O HOH B 889 2.12 REMARK 500 O HOH B 426 O HOH B 675 2.12 REMARK 500 O HOH B 408 O HOH B 751 2.14 REMARK 500 O HOH A 720 O HOH B 839 2.15 REMARK 500 O HOH A 407 O HOH A 684 2.17 REMARK 500 O HOH A 490 O HOH A 673 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS B 188 O HOH A 709 1455 1.18 REMARK 500 CG1 VAL B 171 O HOH A 468 1556 1.99 REMARK 500 CE LYS B 188 O HOH A 676 1455 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 77 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 77 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 259 -0.21 75.90 REMARK 500 PHE A 270 -131.44 53.90 REMARK 500 TYR B 88 -65.81 -25.95 REMARK 500 VAL B 171 -68.05 -92.86 REMARK 500 PHE B 270 -127.12 51.77 REMARK 500 PHE B 270 -127.41 46.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 252 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 809 DISTANCE = 6.53 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VAL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VAL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 DBREF1 6W3X A 41 290 UNP A0A3X8N4T9_CAMJU DBREF2 6W3X A A0A3X8N4T9 41 290 DBREF1 6W3X B 41 290 UNP A0A3X8N4T9_CAMJU DBREF2 6W3X B A0A3X8N4T9 41 290 SEQADV 6W3X GLY A 37 UNP A0A3X8N4T EXPRESSION TAG SEQADV 6W3X ILE A 38 UNP A0A3X8N4T EXPRESSION TAG SEQADV 6W3X ASP A 39 UNP A0A3X8N4T EXPRESSION TAG SEQADV 6W3X PRO A 40 UNP A0A3X8N4T EXPRESSION TAG SEQADV 6W3X GLY B 37 UNP A0A3X8N4T EXPRESSION TAG SEQADV 6W3X ILE B 38 UNP A0A3X8N4T EXPRESSION TAG SEQADV 6W3X ASP B 39 UNP A0A3X8N4T EXPRESSION TAG SEQADV 6W3X PRO B 40 UNP A0A3X8N4T EXPRESSION TAG SEQRES 1 A 254 GLY ILE ASP PRO PHE THR LYS THR SER LEU TYR GLU SER SEQRES 2 A 254 THR LEU LYS ASN GLN THR ASP LEU LEU LYS VAL THR GLN SEQRES 3 A 254 SER THR VAL GLU ASP PHE ARG SER THR ASN GLN SER PHE SEQRES 4 A 254 THR ARG ALA LEU GLU LYS ASP ILE ALA ASN LEU PRO TYR SEQRES 5 A 254 GLN SER LEU ILE THR GLU GLU ASN ILE ILE ASN ASN VAL SEQRES 6 A 254 GLY PRO ILE LEU LYS TYR TYR ARG HIS SER ILE ASN ALA SEQRES 7 A 254 LEU ASN VAL TYR LEU GLY LEU ASN ASN GLY LYS VAL LEU SEQRES 8 A 254 LEU SER GLN LYS SER ASN ASP ALA LYS MET PRO GLU LEU SEQRES 9 A 254 ARG ASP ASP LEU ASP ILE LYS THR LYS ASP TRP TYR GLN SEQRES 10 A 254 GLU ALA LEU LYS THR ASN ASP ILE PHE VAL THR PRO ALA SEQRES 11 A 254 TYR LEU ASP THR VAL LEU LYS GLN TYR VAL ILE THR TYR SEQRES 12 A 254 SER LYS ALA ILE TYR LYS ASP GLY LYS ILE ILE GLY VAL SEQRES 13 A 254 LEU GLY VAL ASP ILE PRO SER GLU ASP LEU GLN ASN LEU SEQRES 14 A 254 VAL ALA LYS THR PRO GLY ASN THR PHE LEU PHE ASP GLN SEQRES 15 A 254 LYS ASN LYS ILE PHE ALA ALA THR ASN LYS GLU LEU LEU SEQRES 16 A 254 ASN PRO SER ILE ASP HIS SER PRO VAL LEU ASN ALA TYR SEQRES 17 A 254 LYS LEU ASN GLY ASP ASN ASN PHE PHE SER TYR LYS LEU SEQRES 18 A 254 ASN ASN GLU GLU ARG LEU GLY ALA CYS THR LYS VAL PHE SEQRES 19 A 254 ALA TYR THR ALA CYS ILE THR GLU SER ALA ASP ILE ILE SEQRES 20 A 254 ASN LYS PRO ILE TYR LYS ALA SEQRES 1 B 254 GLY ILE ASP PRO PHE THR LYS THR SER LEU TYR GLU SER SEQRES 2 B 254 THR LEU LYS ASN GLN THR ASP LEU LEU LYS VAL THR GLN SEQRES 3 B 254 SER THR VAL GLU ASP PHE ARG SER THR ASN GLN SER PHE SEQRES 4 B 254 THR ARG ALA LEU GLU LYS ASP ILE ALA ASN LEU PRO TYR SEQRES 5 B 254 GLN SER LEU ILE THR GLU GLU ASN ILE ILE ASN ASN VAL SEQRES 6 B 254 GLY PRO ILE LEU LYS TYR TYR ARG HIS SER ILE ASN ALA SEQRES 7 B 254 LEU ASN VAL TYR LEU GLY LEU ASN ASN GLY LYS VAL LEU SEQRES 8 B 254 LEU SER GLN LYS SER ASN ASP ALA LYS MET PRO GLU LEU SEQRES 9 B 254 ARG ASP ASP LEU ASP ILE LYS THR LYS ASP TRP TYR GLN SEQRES 10 B 254 GLU ALA LEU LYS THR ASN ASP ILE PHE VAL THR PRO ALA SEQRES 11 B 254 TYR LEU ASP THR VAL LEU LYS GLN TYR VAL ILE THR TYR SEQRES 12 B 254 SER LYS ALA ILE TYR LYS ASP GLY LYS ILE ILE GLY VAL SEQRES 13 B 254 LEU GLY VAL ASP ILE PRO SER GLU ASP LEU GLN ASN LEU SEQRES 14 B 254 VAL ALA LYS THR PRO GLY ASN THR PHE LEU PHE ASP GLN SEQRES 15 B 254 LYS ASN LYS ILE PHE ALA ALA THR ASN LYS GLU LEU LEU SEQRES 16 B 254 ASN PRO SER ILE ASP HIS SER PRO VAL LEU ASN ALA TYR SEQRES 17 B 254 LYS LEU ASN GLY ASP ASN ASN PHE PHE SER TYR LYS LEU SEQRES 18 B 254 ASN ASN GLU GLU ARG LEU GLY ALA CYS THR LYS VAL PHE SEQRES 19 B 254 ALA TYR THR ALA CYS ILE THR GLU SER ALA ASP ILE ILE SEQRES 20 B 254 ASN LYS PRO ILE TYR LYS ALA HET VAL A 301 8 HET GOL A 302 6 HET SO4 A 303 5 HET VAL B 301 8 HET GOL B 302 6 HET SO4 B 303 5 HETNAM VAL VALINE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 VAL 2(C5 H11 N O2) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 SO4 2(O4 S 2-) FORMUL 9 HOH *902(H2 O) HELIX 1 AA1 ASP A 39 ASN A 85 1 47 HELIX 2 AA2 PRO A 87 LEU A 91 5 5 HELIX 3 AA3 THR A 93 ASN A 113 1 21 HELIX 4 AA4 ASP A 145 THR A 148 5 4 HELIX 5 AA5 LYS A 149 LEU A 156 1 8 HELIX 6 AA6 SER A 199 THR A 209 1 11 HELIX 7 AA7 ASN A 227 ASN A 232 5 6 HELIX 8 AA8 HIS A 237 GLY A 248 1 12 HELIX 9 AA9 ALA A 280 LYS A 285 1 6 HELIX 10 AB1 ASP B 39 LYS B 43 5 5 HELIX 11 AB2 THR B 44 ASN B 85 1 42 HELIX 12 AB3 PRO B 87 ILE B 92 5 6 HELIX 13 AB4 THR B 93 ASN B 113 1 21 HELIX 14 AB5 ASP B 145 THR B 148 5 4 HELIX 15 AB6 LYS B 149 THR B 158 1 10 HELIX 16 AB7 SER B 199 THR B 209 1 11 HELIX 17 AB8 ASN B 227 ASN B 232 5 6 HELIX 18 AB9 HIS B 237 GLY B 248 1 12 HELIX 19 AC1 ALA B 280 ASN B 284 1 5 SHEET 1 AA1 6 GLU A 139 ARG A 141 0 SHEET 2 AA1 6 VAL A 126 GLN A 130 -1 N VAL A 126 O ARG A 141 SHEET 3 AA1 6 ASN A 116 GLY A 120 -1 N LEU A 119 O LEU A 127 SHEET 4 AA1 6 LYS A 188 PRO A 198 -1 O VAL A 192 N GLY A 120 SHEET 5 AA1 6 TYR A 175 LYS A 185 -1 N ILE A 183 O ILE A 190 SHEET 6 AA1 6 PHE A 162 VAL A 163 -1 N PHE A 162 O SER A 180 SHEET 1 AA2 6 GLU A 139 ARG A 141 0 SHEET 2 AA2 6 VAL A 126 GLN A 130 -1 N VAL A 126 O ARG A 141 SHEET 3 AA2 6 ASN A 116 GLY A 120 -1 N LEU A 119 O LEU A 127 SHEET 4 AA2 6 LYS A 188 PRO A 198 -1 O VAL A 192 N GLY A 120 SHEET 5 AA2 6 TYR A 175 LYS A 185 -1 N ILE A 183 O ILE A 190 SHEET 6 AA2 6 TYR A 167 LEU A 168 -1 N TYR A 167 O VAL A 176 SHEET 1 AA3 5 ILE A 222 ALA A 225 0 SHEET 2 AA3 5 THR A 213 PHE A 216 -1 N LEU A 215 O PHE A 223 SHEET 3 AA3 5 TYR A 272 SER A 279 -1 O THR A 273 N PHE A 216 SHEET 4 AA3 5 GLU A 260 VAL A 269 -1 N THR A 267 O ALA A 274 SHEET 5 AA3 5 PHE A 253 LEU A 257 -1 N PHE A 253 O GLY A 264 SHEET 1 AA4 6 GLU B 139 ARG B 141 0 SHEET 2 AA4 6 VAL B 126 GLN B 130 -1 N VAL B 126 O ARG B 141 SHEET 3 AA4 6 ASN B 116 GLY B 120 -1 N LEU B 119 O LEU B 127 SHEET 4 AA4 6 LYS B 188 PRO B 198 -1 O VAL B 192 N GLY B 120 SHEET 5 AA4 6 TYR B 175 LYS B 185 -1 N ILE B 183 O ILE B 190 SHEET 6 AA4 6 PHE B 162 VAL B 163 -1 N PHE B 162 O SER B 180 SHEET 1 AA5 6 GLU B 139 ARG B 141 0 SHEET 2 AA5 6 VAL B 126 GLN B 130 -1 N VAL B 126 O ARG B 141 SHEET 3 AA5 6 ASN B 116 GLY B 120 -1 N LEU B 119 O LEU B 127 SHEET 4 AA5 6 LYS B 188 PRO B 198 -1 O VAL B 192 N GLY B 120 SHEET 5 AA5 6 TYR B 175 LYS B 185 -1 N ILE B 183 O ILE B 190 SHEET 6 AA5 6 TYR B 167 LEU B 168 -1 N TYR B 167 O VAL B 176 SHEET 1 AA6 5 ILE B 222 ALA B 225 0 SHEET 2 AA6 5 THR B 213 PHE B 216 -1 N LEU B 215 O PHE B 223 SHEET 3 AA6 5 TYR B 272 SER B 279 -1 O THR B 273 N PHE B 216 SHEET 4 AA6 5 GLU B 260 VAL B 269 -1 N THR B 267 O ALA B 274 SHEET 5 AA6 5 PHE B 253 LEU B 257 -1 N TYR B 255 O ARG B 262 SSBOND 1 CYS A 266 CYS A 275 1555 1555 2.06 SSBOND 2 CYS B 266 CYS B 275 1555 1555 2.05 SITE 1 AC1 8 TYR A 118 LYS A 149 TRP A 151 TYR A 167 SITE 2 AC1 8 ASP A 169 THR A 170 ASP A 196 HOH A 595 SITE 1 AC2 10 PHE A 214 HIS A 237 VAL A 240 TYR A 255 SITE 2 AC2 10 ARG A 262 THR A 277 HOH A 406 HOH A 486 SITE 3 AC2 10 HOH A 603 ASN B 232 SITE 1 AC3 9 ARG A 109 HIS A 110 LYS A 131 SER A 132 SITE 2 AC3 9 ALA A 135 HOH A 454 HOH A 465 HOH A 586 SITE 3 AC3 9 HOH A 605 SITE 1 AC4 9 TYR B 118 LYS B 149 TRP B 151 TYR B 167 SITE 2 AC4 9 ASP B 169 THR B 170 VAL B 171 ASP B 196 SITE 3 AC4 9 HOH B 456 SITE 1 AC5 9 PHE B 214 HIS B 237 VAL B 240 TYR B 255 SITE 2 AC5 9 ARG B 262 THR B 277 HOH B 545 HOH B 561 SITE 3 AC5 9 HOH B 563 SITE 1 AC6 5 ARG B 109 HIS B 110 SER B 132 HOH B 418 SITE 2 AC6 5 HOH B 437 CRYST1 42.570 137.540 49.100 90.00 94.49 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023491 0.000000 0.001845 0.00000 SCALE2 0.000000 0.007271 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020429 0.00000