HEADER HYDROLASE 12-MAR-20 6W58 TITLE HPGDS COMPLEXED WITH AN AZA-QUINOLINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: H-PGDS,GST CLASS-SIGMA,GLUTATHIONE S-TRANSFERASE, COMPND 5 GLUTATHIONE-DEPENDENT PGD SYNTHASE,GLUTATHIONE-REQUIRING COMPND 6 PROSTAGLANDIN D SYNTHASE,PROSTAGLANDIN-H2 D-ISOMERASE; COMPND 7 EC: 5.3.99.2,2.5.1.18; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HPGDS, GSTS, PGDS, PTGDS2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLUTATHIONE S-TRANSFERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.A.ELKINS,P.WARD REVDAT 3 03-APR-24 6W58 1 REMARK REVDAT 2 06-MAR-24 6W58 1 REMARK REVDAT 1 04-NOV-20 6W58 0 JRNL AUTH R.CADILLA,D.N.DEATON,Y.DO,P.A.ELKINS,D.ENNULAT,J.H.GUSS, JRNL AUTH 2 J.HOLT,M.R.JEUNE,A.G.KING,J.C.KLAPWIJK,H.F.KRAMER, JRNL AUTH 3 N.J.KRAMER,S.B.LAFFAN,P.I.MASURIA,A.V.MCDOUGAL, JRNL AUTH 4 P.N.MORTENSON,C.MUSETTI,G.E.PECKHAM,B.L.PIETRAK,C.POOLE, JRNL AUTH 5 D.J.PRICE,A.R.RENDINA,G.SATI,G.SAXTY,B.G.SHEARER, JRNL AUTH 6 L.M.SHEWCHUK,H.F.SNEDDON,E.L.STEWART,J.D.STUART,D.N.THOMAS, JRNL AUTH 7 S.A.THOMSON,P.WARD,J.W.WILSON,T.XU,M.A.YOUNGMAN JRNL TITL THE EXPLORATION OF AZA-QUINOLINES AS HEMATOPOIETIC JRNL TITL 2 PROSTAGLANDIN D SYNTHASE (H-PGDS) INHIBITORS WITH LOW BRAIN JRNL TITL 3 EXPOSURE. JRNL REF BIOORG.MED.CHEM. V. 28 15791 2020 JRNL REFN ESSN 1464-3391 JRNL PMID 33059303 JRNL DOI 10.1016/J.BMC.2020.115791 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.220 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 15587 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1465 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 5.1600 0.91 2889 93 0.1655 0.1894 REMARK 3 2 5.1600 - 4.0900 0.96 3015 134 0.1372 0.2035 REMARK 3 3 4.0900 - 3.5800 0.93 2898 157 0.1540 0.2142 REMARK 3 4 3.5800 - 3.2500 0.95 2938 149 0.1796 0.2534 REMARK 3 5 3.2500 - 3.0200 0.96 3000 188 0.2072 0.2860 REMARK 3 6 3.0200 - 2.8400 0.95 2943 152 0.2254 0.2803 REMARK 3 7 2.8400 - 2.7000 0.96 2976 160 0.2528 0.3293 REMARK 3 8 2.7000 - 2.5800 0.94 2901 181 0.2866 0.3415 REMARK 3 9 2.5800 - 2.4800 0.81 2564 125 0.3124 0.3448 REMARK 3 10 2.4800 - 2.3950 0.63 1894 126 0.3509 0.4658 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 1:35) REMARK 3 ORIGIN FOR THE GROUP (A): 59.7100 -0.7549 63.8853 REMARK 3 T TENSOR REMARK 3 T11: 0.5963 T22: 0.3681 REMARK 3 T33: 0.9301 T12: -0.0582 REMARK 3 T13: 0.2079 T23: -0.0620 REMARK 3 L TENSOR REMARK 3 L11: 5.8929 L22: 6.1821 REMARK 3 L33: 4.7568 L12: 0.5268 REMARK 3 L13: 1.3720 L23: 1.5610 REMARK 3 S TENSOR REMARK 3 S11: -0.1246 S12: 0.0996 S13: 0.2286 REMARK 3 S21: -1.2159 S22: 0.3706 S23: -1.3025 REMARK 3 S31: -0.2261 S32: 0.4020 S33: -0.2993 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 36:52) REMARK 3 ORIGIN FOR THE GROUP (A): 69.1259 6.1032 74.8469 REMARK 3 T TENSOR REMARK 3 T11: 0.4581 T22: 0.8437 REMARK 3 T33: 1.9268 T12: -0.0166 REMARK 3 T13: 0.0591 T23: -0.1388 REMARK 3 L TENSOR REMARK 3 L11: 1.9390 L22: 0.0682 REMARK 3 L33: 3.5192 L12: -0.3572 REMARK 3 L13: -0.2230 L23: 0.1579 REMARK 3 S TENSOR REMARK 3 S11: -0.1624 S12: 0.8692 S13: 0.3170 REMARK 3 S21: -0.1562 S22: 0.1105 S23: -2.6438 REMARK 3 S31: -0.2583 S32: 1.3633 S33: -0.0567 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 53:63) REMARK 3 ORIGIN FOR THE GROUP (A): 59.1651 10.3734 67.3580 REMARK 3 T TENSOR REMARK 3 T11: 0.6309 T22: 0.5310 REMARK 3 T33: 1.2270 T12: 0.0181 REMARK 3 T13: 0.2297 T23: 0.0354 REMARK 3 L TENSOR REMARK 3 L11: 3.0242 L22: 8.8094 REMARK 3 L33: 2.5932 L12: 1.1051 REMARK 3 L13: -2.7704 L23: -0.4143 REMARK 3 S TENSOR REMARK 3 S11: 0.2364 S12: -0.0689 S13: 1.1757 REMARK 3 S21: -1.3739 S22: -0.4913 S23: -1.4862 REMARK 3 S31: -0.8566 S32: 0.3535 S33: 0.2903 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 64:101) REMARK 3 ORIGIN FOR THE GROUP (A): 45.4212 0.0359 72.8216 REMARK 3 T TENSOR REMARK 3 T11: 0.3595 T22: 0.3209 REMARK 3 T33: 0.7406 T12: -0.0176 REMARK 3 T13: -0.1021 T23: -0.0451 REMARK 3 L TENSOR REMARK 3 L11: 2.6458 L22: 7.0179 REMARK 3 L33: 7.7337 L12: 1.1957 REMARK 3 L13: -2.5287 L23: -1.4627 REMARK 3 S TENSOR REMARK 3 S11: -0.0520 S12: 0.0681 S13: 0.3570 REMARK 3 S21: -0.2833 S22: -0.0067 S23: 0.7198 REMARK 3 S31: -0.0552 S32: -0.4371 S33: 0.0828 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 102:121) REMARK 3 ORIGIN FOR THE GROUP (A): 62.9396 -13.0806 86.5403 REMARK 3 T TENSOR REMARK 3 T11: 0.9687 T22: 0.7907 REMARK 3 T33: 1.3001 T12: 0.2880 REMARK 3 T13: -0.3836 T23: -0.0872 REMARK 3 L TENSOR REMARK 3 L11: 5.4544 L22: 9.3936 REMARK 3 L33: 6.6791 L12: 3.3307 REMARK 3 L13: -3.5637 L23: -3.4144 REMARK 3 S TENSOR REMARK 3 S11: 0.2868 S12: -0.6689 S13: 0.4908 REMARK 3 S21: 2.1206 S22: 0.3572 S23: -1.1596 REMARK 3 S31: 0.1407 S32: 0.8420 S33: -0.6216 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 122:135) REMARK 3 ORIGIN FOR THE GROUP (A): 43.6217 -15.1876 81.2291 REMARK 3 T TENSOR REMARK 3 T11: 0.7736 T22: 0.6524 REMARK 3 T33: 1.1129 T12: -0.1815 REMARK 3 T13: 0.2245 T23: 0.1694 REMARK 3 L TENSOR REMARK 3 L11: 2.1950 L22: 5.6757 REMARK 3 L33: 8.9045 L12: -0.2413 REMARK 3 L13: 3.3144 L23: 0.2570 REMARK 3 S TENSOR REMARK 3 S11: 0.1166 S12: -0.9324 S13: -0.8070 REMARK 3 S21: 0.9714 S22: -0.1374 S23: 1.6229 REMARK 3 S31: 1.0696 S32: -1.1659 S33: -0.0012 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 136:163) REMARK 3 ORIGIN FOR THE GROUP (A): 47.0987 -10.8349 70.8808 REMARK 3 T TENSOR REMARK 3 T11: 0.5102 T22: 0.3692 REMARK 3 T33: 0.9485 T12: -0.0700 REMARK 3 T13: -0.0890 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 2.3347 L22: 2.0026 REMARK 3 L33: 6.3066 L12: 2.1586 REMARK 3 L13: 0.5987 L23: 0.9260 REMARK 3 S TENSOR REMARK 3 S11: 0.7845 S12: -0.0293 S13: -1.0426 REMARK 3 S21: -0.7428 S22: -0.2864 S23: 0.7078 REMARK 3 S31: 0.7874 S32: -0.3422 S33: -0.3871 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 164:183) REMARK 3 ORIGIN FOR THE GROUP (A): 47.6684 -20.0541 71.8092 REMARK 3 T TENSOR REMARK 3 T11: 0.6244 T22: 0.4088 REMARK 3 T33: 1.2135 T12: -0.0230 REMARK 3 T13: -0.1876 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 4.9602 L22: 7.2628 REMARK 3 L33: 7.4624 L12: 3.1230 REMARK 3 L13: -4.1450 L23: 0.0028 REMARK 3 S TENSOR REMARK 3 S11: -0.2842 S12: -0.2400 S13: -0.9394 REMARK 3 S21: 0.3860 S22: -0.0651 S23: -0.1903 REMARK 3 S31: 1.0631 S32: -0.1841 S33: 0.3875 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 184:199) REMARK 3 ORIGIN FOR THE GROUP (A): 58.5474 -11.3362 62.0136 REMARK 3 T TENSOR REMARK 3 T11: 0.7269 T22: 0.3978 REMARK 3 T33: 1.0975 T12: 0.0315 REMARK 3 T13: 0.1745 T23: -0.1232 REMARK 3 L TENSOR REMARK 3 L11: 6.2850 L22: 2.7835 REMARK 3 L33: 5.7134 L12: -0.4299 REMARK 3 L13: 0.8140 L23: 0.8863 REMARK 3 S TENSOR REMARK 3 S11: 0.2304 S12: 0.6203 S13: -0.3535 REMARK 3 S21: -1.2606 S22: -0.1996 S23: -1.3155 REMARK 3 S31: 0.9073 S32: 0.2793 S33: -0.1671 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 1:24) REMARK 3 ORIGIN FOR THE GROUP (A): 37.8028 8.6791 89.6055 REMARK 3 T TENSOR REMARK 3 T11: 0.6817 T22: 0.7448 REMARK 3 T33: 0.8463 T12: -0.0771 REMARK 3 T13: 0.2921 T23: -0.2007 REMARK 3 L TENSOR REMARK 3 L11: 9.5636 L22: 6.4290 REMARK 3 L33: 3.4988 L12: 2.6161 REMARK 3 L13: -0.2230 L23: 2.2253 REMARK 3 S TENSOR REMARK 3 S11: 0.4329 S12: -0.6653 S13: 0.7201 REMARK 3 S21: 0.9917 S22: -0.8178 S23: 1.2984 REMARK 3 S31: 0.6402 S32: -0.8844 S33: 0.4468 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 25:38) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0734 7.0058 92.9430 REMARK 3 T TENSOR REMARK 3 T11: 0.9727 T22: 1.3721 REMARK 3 T33: 1.4482 T12: -0.1441 REMARK 3 T13: 0.5264 T23: -0.2821 REMARK 3 L TENSOR REMARK 3 L11: 1.5906 L22: 9.0113 REMARK 3 L33: 2.7755 L12: -0.5613 REMARK 3 L13: -0.1680 L23: -0.3723 REMARK 3 S TENSOR REMARK 3 S11: -0.2286 S12: -0.9602 S13: -0.0378 REMARK 3 S21: 2.1057 S22: 0.3933 S23: 2.8349 REMARK 3 S31: 0.5292 S32: -1.3340 S33: -0.8417 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 39:52) REMARK 3 ORIGIN FOR THE GROUP (A): 39.2830 -7.1741 91.4294 REMARK 3 T TENSOR REMARK 3 T11: 1.1545 T22: 1.0775 REMARK 3 T33: 1.2999 T12: -0.1873 REMARK 3 T13: 0.3319 T23: 0.3120 REMARK 3 L TENSOR REMARK 3 L11: 3.3018 L22: 2.5084 REMARK 3 L33: 3.7163 L12: -1.7136 REMARK 3 L13: -1.7551 L23: -1.2033 REMARK 3 S TENSOR REMARK 3 S11: -0.6597 S12: -0.9159 S13: -0.8848 REMARK 3 S21: 1.5455 S22: 1.4536 S23: 1.5124 REMARK 3 S31: 0.6048 S32: -1.1580 S33: -0.2587 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 53:101) REMARK 3 ORIGIN FOR THE GROUP (A): 44.3379 8.1116 79.0575 REMARK 3 T TENSOR REMARK 3 T11: 0.3979 T22: 0.4320 REMARK 3 T33: 0.9320 T12: 0.0516 REMARK 3 T13: -0.0173 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 5.5465 L22: 3.7738 REMARK 3 L33: 4.6597 L12: 1.7137 REMARK 3 L13: -0.3016 L23: 2.2132 REMARK 3 S TENSOR REMARK 3 S11: -0.0236 S12: 0.1107 S13: -0.0599 REMARK 3 S21: 0.0541 S22: -0.1387 S23: 1.1426 REMARK 3 S31: 0.0483 S32: -0.6595 S33: 0.1022 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 102:122) REMARK 3 ORIGIN FOR THE GROUP (A): 60.6591 0.7228 97.6785 REMARK 3 T TENSOR REMARK 3 T11: 1.2088 T22: 0.7574 REMARK 3 T33: 0.8738 T12: -0.0045 REMARK 3 T13: -0.3530 T23: 0.2337 REMARK 3 L TENSOR REMARK 3 L11: 4.9516 L22: 4.6459 REMARK 3 L33: 1.5473 L12: 2.2654 REMARK 3 L13: -0.9387 L23: 1.5676 REMARK 3 S TENSOR REMARK 3 S11: 0.7905 S12: -1.0502 S13: -1.6501 REMARK 3 S21: 1.4559 S22: -0.9821 S23: -0.2434 REMARK 3 S31: 0.5033 S32: 0.8000 S33: 0.3609 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 123:135) REMARK 3 ORIGIN FOR THE GROUP (A): 62.9982 15.4806 84.5662 REMARK 3 T TENSOR REMARK 3 T11: 0.5945 T22: 0.5017 REMARK 3 T33: 1.0059 T12: 0.0252 REMARK 3 T13: -0.1368 T23: -0.0904 REMARK 3 L TENSOR REMARK 3 L11: 2.4564 L22: 5.2012 REMARK 3 L33: 3.9938 L12: 1.6310 REMARK 3 L13: -0.5301 L23: -4.3467 REMARK 3 S TENSOR REMARK 3 S11: 0.2936 S12: -0.3035 S13: -0.3974 REMARK 3 S21: -0.2206 S22: -0.5093 S23: -0.9125 REMARK 3 S31: -0.0634 S32: 0.7206 S33: 0.2356 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 136:163) REMARK 3 ORIGIN FOR THE GROUP (A): 51.0893 17.5385 85.4833 REMARK 3 T TENSOR REMARK 3 T11: 0.4962 T22: 0.3615 REMARK 3 T33: 0.5516 T12: 0.0958 REMARK 3 T13: -0.0549 T23: -0.1116 REMARK 3 L TENSOR REMARK 3 L11: 6.4505 L22: 6.1110 REMARK 3 L33: 9.7595 L12: 0.3157 REMARK 3 L13: 1.7213 L23: 0.3709 REMARK 3 S TENSOR REMARK 3 S11: -0.2665 S12: -0.1630 S13: 0.6899 REMARK 3 S21: 0.5266 S22: -0.1431 S23: 0.0806 REMARK 3 S31: -1.0895 S32: -0.3319 S33: 0.3729 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 164:183) REMARK 3 ORIGIN FOR THE GROUP (A): 56.7990 21.7855 91.5005 REMARK 3 T TENSOR REMARK 3 T11: 0.8704 T22: 0.5692 REMARK 3 T33: 0.7725 T12: 0.0464 REMARK 3 T13: -0.1839 T23: -0.0684 REMARK 3 L TENSOR REMARK 3 L11: 3.4255 L22: 3.0517 REMARK 3 L33: 3.1962 L12: 1.4416 REMARK 3 L13: -0.9335 L23: 1.5964 REMARK 3 S TENSOR REMARK 3 S11: -0.2104 S12: -1.2260 S13: 1.2679 REMARK 3 S21: 1.1607 S22: -0.0340 S23: -0.8110 REMARK 3 S31: -1.0788 S32: 0.0002 S33: 0.2328 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 184:199) REMARK 3 ORIGIN FOR THE GROUP (A): 40.5227 17.4336 95.5818 REMARK 3 T TENSOR REMARK 3 T11: 0.9545 T22: 0.9798 REMARK 3 T33: 1.1441 T12: 0.0092 REMARK 3 T13: 0.5926 T23: -0.6787 REMARK 3 L TENSOR REMARK 3 L11: 1.2167 L22: 0.7096 REMARK 3 L33: 0.5337 L12: 0.1289 REMARK 3 L13: 0.2031 L23: -0.5609 REMARK 3 S TENSOR REMARK 3 S11: -0.4321 S12: -0.9914 S13: 0.6986 REMARK 3 S21: 1.5404 S22: 0.0574 S23: 0.9269 REMARK 3 S31: 0.1628 S32: -0.9492 S33: -0.4676 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6W58 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247090. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07820 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15587 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.395 REMARK 200 RESOLUTION RANGE LOW (A) : 67.281 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.50800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: IN-HOUSE MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN [10 MG/ML IN 50 MM REMARK 280 TRIS(HYDROXYMETHYL)AMINOMETHANE HYDROCHLORIDE AT PH 7.5, 50 MM REMARK 280 SODIUM CHLORIDE, 1 MM DITHIOTHREITOL, 15 MM GLUTATHIONE, AND 1 REMARK 280 MM MAGNESIUM CHLORIDE] WAS MIXED WITH AN EQUAL VOLUME OF REMARK 280 PRECIPITANT SOLUTION (21% POLY(ETHYLENE GLYCOL) 6000, 1% 1,4- REMARK 280 DIOXANE, 5.5% GLYCEROL, 10 MM DITHIOTHREITOL, AND 60 MM REMARK 280 TRIS(HYDROXYMETHYL)AMINOMETHANE HYDROCHLORIDE AT PH 8.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.64050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 ASN A 3 CG OD1 ND2 REMARK 470 LYS A 5 NZ REMARK 470 GLN A 28 CG CD OE1 NE2 REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 ASP A 38 CG OD1 OD2 REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 GLU A 55 CD OE1 OE2 REMARK 470 VAL A 56 CG1 CG2 REMARK 470 ASP A 76 CG OD1 OD2 REMARK 470 GLU A 106 CG CD OE1 OE2 REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 GLN A 109 CG CD OE1 NE2 REMARK 470 ASP A 110 CG OD1 OD2 REMARK 470 VAL A 111 CG1 CG2 REMARK 470 LYS A 112 CE NZ REMARK 470 GLU A 113 CG CD OE1 OE2 REMARK 470 GLN A 114 CG CD OE1 NE2 REMARK 470 MET A 115 CG SD CE REMARK 470 ASN A 117 CG OD1 ND2 REMARK 470 GLU A 118 CG CD OE1 OE2 REMARK 470 TYR A 122 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 123 CG OD1 ND2 REMARK 470 HIS A 126 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 129 CG CD OE1 NE2 REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 LYS A 164 CD CE NZ REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 ARG A 193 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 196 CG CD OE1 NE2 REMARK 470 LYS A 198 NZ REMARK 470 MET B 1 CG SD CE REMARK 470 ASN B 10 CG OD1 ND2 REMARK 470 GLN B 28 CG CD OE1 NE2 REMARK 470 ARG B 33 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 34 CG1 CG2 CD1 REMARK 470 GLU B 35 CG CD OE1 OE2 REMARK 470 GLN B 36 CG CD OE1 NE2 REMARK 470 ASP B 38 CG OD1 OD2 REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 ILE B 42 CG1 CG2 CD1 REMARK 470 LYS B 43 CG CD CE NZ REMARK 470 SER B 44 OG REMARK 470 THR B 45 OG1 CG2 REMARK 470 LEU B 46 CG CD1 CD2 REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 LYS B 73 CG CD CE NZ REMARK 470 LYS B 107 CG CD CE NZ REMARK 470 LYS B 108 CG CD CE NZ REMARK 470 GLN B 109 OE1 NE2 REMARK 470 VAL B 111 CG1 CG2 REMARK 470 GLU B 113 CG CD OE1 OE2 REMARK 470 GLN B 114 CD OE1 NE2 REMARK 470 MET B 115 CE REMARK 470 ASN B 117 CG OD1 ND2 REMARK 470 GLU B 118 CG CD OE1 OE2 REMARK 470 LYS B 179 CE NZ REMARK 470 ASN B 189 CG OD1 ND2 REMARK 470 ILE B 191 CD1 REMARK 470 LYS B 192 CG CD CE NZ REMARK 470 ARG B 193 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 196 CG CD OE1 NE2 REMARK 470 LYS B 198 CG CD CE NZ REMARK 470 LEU B 199 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 63 106.66 76.24 REMARK 500 LYS A 108 98.52 -68.33 REMARK 500 GLN A 182 -9.63 -59.55 REMARK 500 GLN B 63 96.32 72.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GSH A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SWS A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SWS B 201 DBREF 6W58 A 1 199 UNP O60760 HPGDS_HUMAN 1 199 DBREF 6W58 B 1 199 UNP O60760 HPGDS_HUMAN 1 199 SEQRES 1 A 199 MET PRO ASN TYR LYS LEU THR TYR PHE ASN MET ARG GLY SEQRES 2 A 199 ARG ALA GLU ILE ILE ARG TYR ILE PHE ALA TYR LEU ASP SEQRES 3 A 199 ILE GLN TYR GLU ASP HIS ARG ILE GLU GLN ALA ASP TRP SEQRES 4 A 199 PRO GLU ILE LYS SER THR LEU PRO PHE GLY LYS ILE PRO SEQRES 5 A 199 ILE LEU GLU VAL ASP GLY LEU THR LEU HIS GLN SER LEU SEQRES 6 A 199 ALA ILE ALA ARG TYR LEU THR LYS ASN THR ASP LEU ALA SEQRES 7 A 199 GLY ASN THR GLU MET GLU GLN CYS HIS VAL ASP ALA ILE SEQRES 8 A 199 VAL ASP THR LEU ASP ASP PHE MET SER CYS PHE PRO TRP SEQRES 9 A 199 ALA GLU LYS LYS GLN ASP VAL LYS GLU GLN MET PHE ASN SEQRES 10 A 199 GLU LEU LEU THR TYR ASN ALA PRO HIS LEU MET GLN ASP SEQRES 11 A 199 LEU ASP THR TYR LEU GLY GLY ARG GLU TRP LEU ILE GLY SEQRES 12 A 199 ASN SER VAL THR TRP ALA ASP PHE TYR TRP GLU ILE CYS SEQRES 13 A 199 SER THR THR LEU LEU VAL PHE LYS PRO ASP LEU LEU ASP SEQRES 14 A 199 ASN HIS PRO ARG LEU VAL THR LEU ARG LYS LYS VAL GLN SEQRES 15 A 199 ALA ILE PRO ALA VAL ALA ASN TRP ILE LYS ARG ARG PRO SEQRES 16 A 199 GLN THR LYS LEU SEQRES 1 B 199 MET PRO ASN TYR LYS LEU THR TYR PHE ASN MET ARG GLY SEQRES 2 B 199 ARG ALA GLU ILE ILE ARG TYR ILE PHE ALA TYR LEU ASP SEQRES 3 B 199 ILE GLN TYR GLU ASP HIS ARG ILE GLU GLN ALA ASP TRP SEQRES 4 B 199 PRO GLU ILE LYS SER THR LEU PRO PHE GLY LYS ILE PRO SEQRES 5 B 199 ILE LEU GLU VAL ASP GLY LEU THR LEU HIS GLN SER LEU SEQRES 6 B 199 ALA ILE ALA ARG TYR LEU THR LYS ASN THR ASP LEU ALA SEQRES 7 B 199 GLY ASN THR GLU MET GLU GLN CYS HIS VAL ASP ALA ILE SEQRES 8 B 199 VAL ASP THR LEU ASP ASP PHE MET SER CYS PHE PRO TRP SEQRES 9 B 199 ALA GLU LYS LYS GLN ASP VAL LYS GLU GLN MET PHE ASN SEQRES 10 B 199 GLU LEU LEU THR TYR ASN ALA PRO HIS LEU MET GLN ASP SEQRES 11 B 199 LEU ASP THR TYR LEU GLY GLY ARG GLU TRP LEU ILE GLY SEQRES 12 B 199 ASN SER VAL THR TRP ALA ASP PHE TYR TRP GLU ILE CYS SEQRES 13 B 199 SER THR THR LEU LEU VAL PHE LYS PRO ASP LEU LEU ASP SEQRES 14 B 199 ASN HIS PRO ARG LEU VAL THR LEU ARG LYS LYS VAL GLN SEQRES 15 B 199 ALA ILE PRO ALA VAL ALA ASN TRP ILE LYS ARG ARG PRO SEQRES 16 B 199 GLN THR LYS LEU HET GSH A 201 20 HET SWS A 202 27 HET SWS B 201 27 HETNAM GSH GLUTATHIONE HETNAM SWS 7-(AZETIDIN-1-YL)-~{N}-[4-(2-OXIDANYLPROPAN-2-YL) HETNAM 2 SWS CYCLOHEXYL]-1,6-NAPHTHYRIDINE-3-CARBOXAMIDE FORMUL 3 GSH C10 H17 N3 O6 S FORMUL 4 SWS 2(C21 H28 N4 O2) FORMUL 6 HOH *22(H2 O) HELIX 1 AA1 ARG A 12 ARG A 14 5 3 HELIX 2 AA2 ALA A 15 ASP A 26 1 12 HELIX 3 AA3 GLU A 35 ASP A 38 5 4 HELIX 4 AA4 TRP A 39 SER A 44 1 6 HELIX 5 AA5 GLN A 63 LYS A 73 1 11 HELIX 6 AA6 THR A 75 GLY A 79 5 5 HELIX 7 AA7 THR A 81 PHE A 102 1 22 HELIX 8 AA8 LYS A 108 TYR A 122 1 15 HELIX 9 AA9 TYR A 122 GLY A 136 1 15 HELIX 10 AB1 THR A 147 LYS A 164 1 18 HELIX 11 AB2 HIS A 171 ALA A 183 1 13 HELIX 12 AB3 ILE A 184 ARG A 194 1 11 HELIX 13 AB4 ALA B 15 ASP B 26 1 12 HELIX 14 AB5 ASP B 38 LEU B 46 1 9 HELIX 15 AB6 GLN B 63 LYS B 73 1 11 HELIX 16 AB7 THR B 75 GLY B 79 5 5 HELIX 17 AB8 THR B 81 PHE B 102 1 22 HELIX 18 AB9 LYS B 108 TYR B 122 1 15 HELIX 19 AC1 TYR B 122 GLY B 136 1 15 HELIX 20 AC2 THR B 147 LYS B 164 1 18 HELIX 21 AC3 HIS B 171 ALA B 183 1 13 HELIX 22 AC4 ILE B 184 ARG B 194 1 11 SHEET 1 AA1 4 GLU A 30 ILE A 34 0 SHEET 2 AA1 4 TYR A 4 PHE A 9 1 N LEU A 6 O GLU A 30 SHEET 3 AA1 4 ILE A 53 VAL A 56 -1 O ILE A 53 N THR A 7 SHEET 4 AA1 4 LEU A 59 HIS A 62 -1 O LEU A 61 N LEU A 54 SHEET 1 AA2 4 GLU B 30 ILE B 34 0 SHEET 2 AA2 4 TYR B 4 PHE B 9 1 N TYR B 8 O ILE B 34 SHEET 3 AA2 4 ILE B 53 VAL B 56 -1 O GLU B 55 N LYS B 5 SHEET 4 AA2 4 THR B 60 HIS B 62 -1 O LEU B 61 N LEU B 54 CISPEP 1 ILE A 51 PRO A 52 0 5.20 CISPEP 2 ILE B 51 PRO B 52 0 2.92 SITE 1 AC1 9 TYR A 8 PHE A 9 ARG A 14 LYS A 50 SITE 2 AC1 9 ILE A 51 PRO A 52 GLN A 63 SER A 64 SITE 3 AC1 9 ASP B 97 SITE 1 AC2 9 GLY A 13 ARG A 14 GLN A 36 TRP A 39 SITE 2 AC2 9 MET A 99 TRP A 104 TYR A 152 LEU A 199 SITE 3 AC2 9 ASP B 57 SITE 1 AC3 7 GLY B 13 ARG B 14 TRP B 39 MET B 99 SITE 2 AC3 7 TRP B 104 ALA B 105 TYR B 152 CRYST1 47.863 67.281 67.204 90.00 96.83 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020893 0.000000 0.002502 0.00000 SCALE2 0.000000 0.014863 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014986 0.00000