HEADER TRANSPORT PROTEIN 13-MAR-20 6W5S TITLE NPC1 STRUCTURE IN GDN MICELLES AT PH 8.0 CAVEAT 6W5S NAG B 2 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NIEMANN-PICK C1 PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NPC1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS CHOLESTEROL LYSOSOME, TRANSPORT PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR N.YAN,H.W.QIAN,X.L.WU REVDAT 4 29-JUL-20 6W5S 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 22-JUL-20 6W5S 1 JRNL REVDAT 2 01-JUL-20 6W5S 1 JRNL REVDAT 1 17-JUN-20 6W5S 0 JRNL AUTH H.QIAN,X.WU,X.DU,X.YAO,X.ZHAO,J.LEE,H.YANG,N.YAN JRNL TITL STRUCTURAL BASIS OF LOW-PH-DEPENDENT LYSOSOMAL CHOLESTEROL JRNL TITL 2 EGRESS BY NPC1 AND NPC2. JRNL REF CELL V. 182 98 2020 JRNL REFN ISSN 1097-4172 JRNL PMID 32544384 JRNL DOI 10.1016/J.CELL.2020.05.020 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : GCTF, RELION, RELION, RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.000 REMARK 3 NUMBER OF PARTICLES : 813922 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6W5S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247682. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : NPC1 AT PH 8.0 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 15.00 REMARK 245 SAMPLE SUPPORT DETAILS : UNSPECIFIED REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 50.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 ARG A 4 REMARK 465 GLY A 5 REMARK 465 LEU A 6 REMARK 465 ALA A 7 REMARK 465 LEU A 8 REMARK 465 GLY A 9 REMARK 465 LEU A 10 REMARK 465 LEU A 11 REMARK 465 LEU A 12 REMARK 465 LEU A 13 REMARK 465 LEU A 14 REMARK 465 LEU A 15 REMARK 465 CYS A 16 REMARK 465 PRO A 17 REMARK 465 ALA A 18 REMARK 465 GLN A 19 REMARK 465 VAL A 20 REMARK 465 PHE A 21 REMARK 465 SER A 22 REMARK 465 ARG A 296 REMARK 465 TYR A 297 REMARK 465 PHE A 298 REMARK 465 VAL A 299 REMARK 465 SER A 300 REMARK 465 GLU A 301 REMARK 465 TYR A 302 REMARK 465 THR A 303 REMARK 465 PRO A 304 REMARK 465 ILE A 305 REMARK 465 ASP A 306 REMARK 465 SER A 307 REMARK 465 ASN A 308 REMARK 465 ILE A 309 REMARK 465 ALA A 310 REMARK 465 PHE A 311 REMARK 465 SER A 312 REMARK 465 VAL A 313 REMARK 465 ASN A 314 REMARK 465 ALA A 315 REMARK 465 SER A 316 REMARK 465 ASP A 317 REMARK 465 LYS A 318 REMARK 465 GLY A 319 REMARK 465 GLU A 320 REMARK 465 ALA A 321 REMARK 465 SER A 322 REMARK 465 CYS A 323 REMARK 465 CYS A 324 REMARK 465 ASP A 325 REMARK 465 GLY A 803 REMARK 465 ALA A 804 REMARK 465 GLU A 805 REMARK 465 ASP A 806 REMARK 465 GLY A 807 REMARK 465 THR A 808 REMARK 465 SER A 809 REMARK 465 VAL A 810 REMARK 465 GLN A 811 REMARK 465 ASN A 1256 REMARK 465 LYS A 1257 REMARK 465 ALA A 1258 REMARK 465 LYS A 1259 REMARK 465 SER A 1260 REMARK 465 CYS A 1261 REMARK 465 ALA A 1262 REMARK 465 THR A 1263 REMARK 465 GLU A 1264 REMARK 465 GLU A 1265 REMARK 465 ARG A 1266 REMARK 465 TYR A 1267 REMARK 465 LYS A 1268 REMARK 465 GLY A 1269 REMARK 465 THR A 1270 REMARK 465 GLU A 1271 REMARK 465 ARG A 1272 REMARK 465 GLU A 1273 REMARK 465 ARG A 1274 REMARK 465 LEU A 1275 REMARK 465 LEU A 1276 REMARK 465 ASN A 1277 REMARK 465 PHE A 1278 REMARK 465 LEU A 1279 REMARK 465 GLU A 1280 REMARK 465 GLY A 1281 REMARK 465 SER A 1282 REMARK 465 ASP A 1283 REMARK 465 GLU A 1284 REMARK 465 VAL A 1285 REMARK 465 ASP A 1286 REMARK 465 ALA A 1287 REMARK 465 GLY A 1288 REMARK 465 SER A 1289 REMARK 465 HIS A 1290 REMARK 465 HIS A 1291 REMARK 465 HIS A 1292 REMARK 465 HIS A 1293 REMARK 465 HIS A 1294 REMARK 465 HIS A 1295 REMARK 465 HIS A 1296 REMARK 465 HIS A 1297 REMARK 465 HIS A 1298 REMARK 465 HIS A 1299 REMARK 465 GLY A 1300 REMARK 465 SER A 1301 REMARK 465 VAL A 1302 REMARK 465 GLU A 1303 REMARK 465 ASP A 1304 REMARK 465 TYR A 1305 REMARK 465 LYS A 1306 REMARK 465 ASP A 1307 REMARK 465 ASP A 1308 REMARK 465 ASP A 1309 REMARK 465 ASP A 1310 REMARK 465 LYS A 1311 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 294 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 295 CG CD CE NZ REMARK 470 PRO A 326 CG CD REMARK 470 VAL A 327 CG1 CG2 REMARK 470 SER A 328 OG REMARK 470 ASP A 436 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 222 C1 NAG E 1 1.66 REMARK 500 OE2 GLU A 164 NE2 GLN A 241 1.95 REMARK 500 O PHE A 821 OG SER A 826 2.03 REMARK 500 O GLN A 119 SD MET A 217 2.03 REMARK 500 NH2 ARG A 78 OE1 GLN A 81 2.05 REMARK 500 O CYS A 909 OG SER A 918 2.07 REMARK 500 ND2 ASN A 931 O5 NAG D 1 2.12 REMARK 500 OD1 ASP A 1053 NZ LYS A 1057 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 70 N - CA - C ANGL. DEV. = -24.9 DEGREES REMARK 500 CYS A 240 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 CYS A 479 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 35 147.88 -170.64 REMARK 500 ASN A 70 69.67 156.91 REMARK 500 CYS A 74 5.67 -65.56 REMARK 500 THR A 112 -60.61 -99.84 REMARK 500 CYS A 113 35.49 -141.07 REMARK 500 LYS A 179 -176.71 -171.65 REMARK 500 PRO A 219 -178.20 -66.83 REMARK 500 GLU A 233 10.31 -68.13 REMARK 500 ALA A 267 -6.97 73.03 REMARK 500 ASN A 478 -85.86 -62.44 REMARK 500 CYS A 479 173.21 163.50 REMARK 500 GLN A 489 38.01 71.40 REMARK 500 PHE A 503 -8.01 78.71 REMARK 500 PHE A 504 149.61 -178.46 REMARK 500 THR A 526 16.65 52.78 REMARK 500 LEU A 528 -2.22 64.85 REMARK 500 ASP A 552 -22.16 76.03 REMARK 500 GLN A 553 -5.77 -152.44 REMARK 500 ASN A 596 71.95 35.92 REMARK 500 PRO A 597 -9.03 -53.79 REMARK 500 ASP A 618 -175.58 -171.99 REMARK 500 LYS A 643 -6.85 65.48 REMARK 500 THR A 777 -63.28 -96.33 REMARK 500 ASN A 793 8.64 59.41 REMARK 500 ASP A 796 -154.86 -80.36 REMARK 500 PHE A 798 -76.75 -55.94 REMARK 500 CYS A 799 154.00 171.78 REMARK 500 CYS A 800 41.59 33.94 REMARK 500 SER A 815 152.29 -49.16 REMARK 500 GLN A 862 -3.31 83.05 REMARK 500 PRO A 867 170.49 -57.89 REMARK 500 TYR A 899 -6.84 74.61 REMARK 500 ASP A 930 -6.58 71.02 REMARK 500 SER A 940 62.72 63.48 REMARK 500 VAL A 972 -8.34 -59.99 REMARK 500 ALA A 975 22.44 -142.60 REMARK 500 GLN A 988 171.44 -56.97 REMARK 500 ARG A1032 -179.90 -68.07 REMARK 500 CYS A1119 14.98 -141.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 478 CYS A 479 142.01 REMARK 500 CYS A 909 GLY A 910 143.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 69 -12.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG E 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-21546 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-21545 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-21547 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-21548 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-21549 RELATED DB: EMDB DBREF 6W5S A 1 1278 UNP O15118 NPC1_HUMAN 1 1278 SEQADV 6W5S LEU A 1279 UNP O15118 EXPRESSION TAG SEQADV 6W5S GLU A 1280 UNP O15118 EXPRESSION TAG SEQADV 6W5S GLY A 1281 UNP O15118 EXPRESSION TAG SEQADV 6W5S SER A 1282 UNP O15118 EXPRESSION TAG SEQADV 6W5S ASP A 1283 UNP O15118 EXPRESSION TAG SEQADV 6W5S GLU A 1284 UNP O15118 EXPRESSION TAG SEQADV 6W5S VAL A 1285 UNP O15118 EXPRESSION TAG SEQADV 6W5S ASP A 1286 UNP O15118 EXPRESSION TAG SEQADV 6W5S ALA A 1287 UNP O15118 EXPRESSION TAG SEQADV 6W5S GLY A 1288 UNP O15118 EXPRESSION TAG SEQADV 6W5S SER A 1289 UNP O15118 EXPRESSION TAG SEQADV 6W5S HIS A 1290 UNP O15118 EXPRESSION TAG SEQADV 6W5S HIS A 1291 UNP O15118 EXPRESSION TAG SEQADV 6W5S HIS A 1292 UNP O15118 EXPRESSION TAG SEQADV 6W5S HIS A 1293 UNP O15118 EXPRESSION TAG SEQADV 6W5S HIS A 1294 UNP O15118 EXPRESSION TAG SEQADV 6W5S HIS A 1295 UNP O15118 EXPRESSION TAG SEQADV 6W5S HIS A 1296 UNP O15118 EXPRESSION TAG SEQADV 6W5S HIS A 1297 UNP O15118 EXPRESSION TAG SEQADV 6W5S HIS A 1298 UNP O15118 EXPRESSION TAG SEQADV 6W5S HIS A 1299 UNP O15118 EXPRESSION TAG SEQADV 6W5S GLY A 1300 UNP O15118 EXPRESSION TAG SEQADV 6W5S SER A 1301 UNP O15118 EXPRESSION TAG SEQADV 6W5S VAL A 1302 UNP O15118 EXPRESSION TAG SEQADV 6W5S GLU A 1303 UNP O15118 EXPRESSION TAG SEQADV 6W5S ASP A 1304 UNP O15118 EXPRESSION TAG SEQADV 6W5S TYR A 1305 UNP O15118 EXPRESSION TAG SEQADV 6W5S LYS A 1306 UNP O15118 EXPRESSION TAG SEQADV 6W5S ASP A 1307 UNP O15118 EXPRESSION TAG SEQADV 6W5S ASP A 1308 UNP O15118 EXPRESSION TAG SEQADV 6W5S ASP A 1309 UNP O15118 EXPRESSION TAG SEQADV 6W5S ASP A 1310 UNP O15118 EXPRESSION TAG SEQADV 6W5S LYS A 1311 UNP O15118 EXPRESSION TAG SEQRES 1 A 1311 MET THR ALA ARG GLY LEU ALA LEU GLY LEU LEU LEU LEU SEQRES 2 A 1311 LEU LEU CYS PRO ALA GLN VAL PHE SER GLN SER CYS VAL SEQRES 3 A 1311 TRP TYR GLY GLU CYS GLY ILE ALA TYR GLY ASP LYS ARG SEQRES 4 A 1311 TYR ASN CYS GLU TYR SER GLY PRO PRO LYS PRO LEU PRO SEQRES 5 A 1311 LYS ASP GLY TYR ASP LEU VAL GLN GLU LEU CYS PRO GLY SEQRES 6 A 1311 PHE PHE PHE GLY ASN VAL SER LEU CYS CYS ASP VAL ARG SEQRES 7 A 1311 GLN LEU GLN THR LEU LYS ASP ASN LEU GLN LEU PRO LEU SEQRES 8 A 1311 GLN PHE LEU SER ARG CYS PRO SER CYS PHE TYR ASN LEU SEQRES 9 A 1311 LEU ASN LEU PHE CYS GLU LEU THR CYS SER PRO ARG GLN SEQRES 10 A 1311 SER GLN PHE LEU ASN VAL THR ALA THR GLU ASP TYR VAL SEQRES 11 A 1311 ASP PRO VAL THR ASN GLN THR LYS THR ASN VAL LYS GLU SEQRES 12 A 1311 LEU GLN TYR TYR VAL GLY GLN SER PHE ALA ASN ALA MET SEQRES 13 A 1311 TYR ASN ALA CYS ARG ASP VAL GLU ALA PRO SER SER ASN SEQRES 14 A 1311 ASP LYS ALA LEU GLY LEU LEU CYS GLY LYS ASP ALA ASP SEQRES 15 A 1311 ALA CYS ASN ALA THR ASN TRP ILE GLU TYR MET PHE ASN SEQRES 16 A 1311 LYS ASP ASN GLY GLN ALA PRO PHE THR ILE THR PRO VAL SEQRES 17 A 1311 PHE SER ASP PHE PRO VAL HIS GLY MET GLU PRO MET ASN SEQRES 18 A 1311 ASN ALA THR LYS GLY CYS ASP GLU SER VAL ASP GLU VAL SEQRES 19 A 1311 THR ALA PRO CYS SER CYS GLN ASP CYS SER ILE VAL CYS SEQRES 20 A 1311 GLY PRO LYS PRO GLN PRO PRO PRO PRO PRO ALA PRO TRP SEQRES 21 A 1311 THR ILE LEU GLY LEU ASP ALA MET TYR VAL ILE MET TRP SEQRES 22 A 1311 ILE THR TYR MET ALA PHE LEU LEU VAL PHE PHE GLY ALA SEQRES 23 A 1311 PHE PHE ALA VAL TRP CYS TYR ARG LYS ARG TYR PHE VAL SEQRES 24 A 1311 SER GLU TYR THR PRO ILE ASP SER ASN ILE ALA PHE SER SEQRES 25 A 1311 VAL ASN ALA SER ASP LYS GLY GLU ALA SER CYS CYS ASP SEQRES 26 A 1311 PRO VAL SER ALA ALA PHE GLU GLY CYS LEU ARG ARG LEU SEQRES 27 A 1311 PHE THR ARG TRP GLY SER PHE CYS VAL ARG ASN PRO GLY SEQRES 28 A 1311 CYS VAL ILE PHE PHE SER LEU VAL PHE ILE THR ALA CYS SEQRES 29 A 1311 SER SER GLY LEU VAL PHE VAL ARG VAL THR THR ASN PRO SEQRES 30 A 1311 VAL ASP LEU TRP SER ALA PRO SER SER GLN ALA ARG LEU SEQRES 31 A 1311 GLU LYS GLU TYR PHE ASP GLN HIS PHE GLY PRO PHE PHE SEQRES 32 A 1311 ARG THR GLU GLN LEU ILE ILE ARG ALA PRO LEU THR ASP SEQRES 33 A 1311 LYS HIS ILE TYR GLN PRO TYR PRO SER GLY ALA ASP VAL SEQRES 34 A 1311 PRO PHE GLY PRO PRO LEU ASP ILE GLN ILE LEU HIS GLN SEQRES 35 A 1311 VAL LEU ASP LEU GLN ILE ALA ILE GLU ASN ILE THR ALA SEQRES 36 A 1311 SER TYR ASP ASN GLU THR VAL THR LEU GLN ASP ILE CYS SEQRES 37 A 1311 LEU ALA PRO LEU SER PRO TYR ASN THR ASN CYS THR ILE SEQRES 38 A 1311 LEU SER VAL LEU ASN TYR PHE GLN ASN SER HIS SER VAL SEQRES 39 A 1311 LEU ASP HIS LYS LYS GLY ASP ASP PHE PHE VAL TYR ALA SEQRES 40 A 1311 ASP TYR HIS THR HIS PHE LEU TYR CYS VAL ARG ALA PRO SEQRES 41 A 1311 ALA SER LEU ASN ASP THR SER LEU LEU HIS ASP PRO CYS SEQRES 42 A 1311 LEU GLY THR PHE GLY GLY PRO VAL PHE PRO TRP LEU VAL SEQRES 43 A 1311 LEU GLY GLY TYR ASP ASP GLN ASN TYR ASN ASN ALA THR SEQRES 44 A 1311 ALA LEU VAL ILE THR PHE PRO VAL ASN ASN TYR TYR ASN SEQRES 45 A 1311 ASP THR GLU LYS LEU GLN ARG ALA GLN ALA TRP GLU LYS SEQRES 46 A 1311 GLU PHE ILE ASN PHE VAL LYS ASN TYR LYS ASN PRO ASN SEQRES 47 A 1311 LEU THR ILE SER PHE THR ALA GLU ARG SER ILE GLU ASP SEQRES 48 A 1311 GLU LEU ASN ARG GLU SER ASP SER ASP VAL PHE THR VAL SEQRES 49 A 1311 VAL ILE SER TYR ALA ILE MET PHE LEU TYR ILE SER LEU SEQRES 50 A 1311 ALA LEU GLY HIS MET LYS SER CYS ARG ARG LEU LEU VAL SEQRES 51 A 1311 ASP SER LYS VAL SER LEU GLY ILE ALA GLY ILE LEU ILE SEQRES 52 A 1311 VAL LEU SER SER VAL ALA CYS SER LEU GLY VAL PHE SER SEQRES 53 A 1311 TYR ILE GLY LEU PRO LEU THR LEU ILE VAL ILE GLU VAL SEQRES 54 A 1311 ILE PRO PHE LEU VAL LEU ALA VAL GLY VAL ASP ASN ILE SEQRES 55 A 1311 PHE ILE LEU VAL GLN ALA TYR GLN ARG ASP GLU ARG LEU SEQRES 56 A 1311 GLN GLY GLU THR LEU ASP GLN GLN LEU GLY ARG VAL LEU SEQRES 57 A 1311 GLY GLU VAL ALA PRO SER MET PHE LEU SER SER PHE SER SEQRES 58 A 1311 GLU THR VAL ALA PHE PHE LEU GLY ALA LEU SER VAL MET SEQRES 59 A 1311 PRO ALA VAL HIS THR PHE SER LEU PHE ALA GLY LEU ALA SEQRES 60 A 1311 VAL PHE ILE ASP PHE LEU LEU GLN ILE THR CYS PHE VAL SEQRES 61 A 1311 SER LEU LEU GLY LEU ASP ILE LYS ARG GLN GLU LYS ASN SEQRES 62 A 1311 ARG LEU ASP ILE PHE CYS CYS VAL ARG GLY ALA GLU ASP SEQRES 63 A 1311 GLY THR SER VAL GLN ALA SER GLU SER CYS LEU PHE ARG SEQRES 64 A 1311 PHE PHE LYS ASN SER TYR SER PRO LEU LEU LEU LYS ASP SEQRES 65 A 1311 TRP MET ARG PRO ILE VAL ILE ALA ILE PHE VAL GLY VAL SEQRES 66 A 1311 LEU SER PHE SER ILE ALA VAL LEU ASN LYS VAL ASP ILE SEQRES 67 A 1311 GLY LEU ASP GLN SER LEU SER MET PRO ASP ASP SER TYR SEQRES 68 A 1311 MET VAL ASP TYR PHE LYS SER ILE SER GLN TYR LEU HIS SEQRES 69 A 1311 ALA GLY PRO PRO VAL TYR PHE VAL LEU GLU GLU GLY HIS SEQRES 70 A 1311 ASP TYR THR SER SER LYS GLY GLN ASN MET VAL CYS GLY SEQRES 71 A 1311 GLY MET GLY CYS ASN ASN ASP SER LEU VAL GLN GLN ILE SEQRES 72 A 1311 PHE ASN ALA ALA GLN LEU ASP ASN TYR THR ARG ILE GLY SEQRES 73 A 1311 PHE ALA PRO SER SER TRP ILE ASP ASP TYR PHE ASP TRP SEQRES 74 A 1311 VAL LYS PRO GLN SER SER CYS CYS ARG VAL ASP ASN ILE SEQRES 75 A 1311 THR ASP GLN PHE CYS ASN ALA SER VAL VAL ASP PRO ALA SEQRES 76 A 1311 CYS VAL ARG CYS ARG PRO LEU THR PRO GLU GLY LYS GLN SEQRES 77 A 1311 ARG PRO GLN GLY GLY ASP PHE MET ARG PHE LEU PRO MET SEQRES 78 A 1311 PHE LEU SER ASP ASN PRO ASN PRO LYS CYS GLY LYS GLY SEQRES 79 A 1311 GLY HIS ALA ALA TYR SER SER ALA VAL ASN ILE LEU LEU SEQRES 80 A 1311 GLY HIS GLY THR ARG VAL GLY ALA THR TYR PHE MET THR SEQRES 81 A 1311 TYR HIS THR VAL LEU GLN THR SER ALA ASP PHE ILE ASP SEQRES 82 A 1311 ALA LEU LYS LYS ALA ARG LEU ILE ALA SER ASN VAL THR SEQRES 83 A 1311 GLU THR MET GLY ILE ASN GLY SER ALA TYR ARG VAL PHE SEQRES 84 A 1311 PRO TYR SER VAL PHE TYR VAL PHE TYR GLU GLN TYR LEU SEQRES 85 A 1311 THR ILE ILE ASP ASP THR ILE PHE ASN LEU GLY VAL SER SEQRES 86 A 1311 LEU GLY ALA ILE PHE LEU VAL THR MET VAL LEU LEU GLY SEQRES 87 A 1311 CYS GLU LEU TRP SER ALA VAL ILE MET CYS ALA THR ILE SEQRES 88 A 1311 ALA MET VAL LEU VAL ASN MET PHE GLY VAL MET TRP LEU SEQRES 89 A 1311 TRP GLY ILE SER LEU ASN ALA VAL SER LEU VAL ASN LEU SEQRES 90 A 1311 VAL MET SER CYS GLY ILE SER VAL GLU PHE CYS SER HIS SEQRES 91 A 1311 ILE THR ARG ALA PHE THR VAL SER MET LYS GLY SER ARG SEQRES 92 A 1311 VAL GLU ARG ALA GLU GLU ALA LEU ALA HIS MET GLY SER SEQRES 93 A 1311 SER VAL PHE SER GLY ILE THR LEU THR LYS PHE GLY GLY SEQRES 94 A 1311 ILE VAL VAL LEU ALA PHE ALA LYS SER GLN ILE PHE GLN SEQRES 95 A 1311 ILE PHE TYR PHE ARG MET TYR LEU ALA MET VAL LEU LEU SEQRES 96 A 1311 GLY ALA THR HIS GLY LEU ILE PHE LEU PRO VAL LEU LEU SEQRES 97 A 1311 SER TYR ILE GLY PRO SER VAL ASN LYS ALA LYS SER CYS SEQRES 98 A 1311 ALA THR GLU GLU ARG TYR LYS GLY THR GLU ARG GLU ARG SEQRES 99 A 1311 LEU LEU ASN PHE LEU GLU GLY SER ASP GLU VAL ASP ALA SEQRES 100 A 1311 GLY SER HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS GLY SEQRES 101 A 1311 SER VAL GLU ASP TYR LYS ASP ASP ASP ASP LYS HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET MAN C 3 11 HET NAG D 1 14 HET NAG D 2 14 HET MAN D 3 11 HET NAG E 1 14 HET NAG E 2 14 HET NAG A1401 14 HET NAG A1402 14 HET NAG A1405 14 HET NAG A1409 14 HET NAG A1410 14 HET NAG A1414 14 HET NAG A1415 14 HET NAG A1416 14 HET NAG A1419 14 HET CLR A1420 28 HET POV A1421 52 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CLR CHOLESTEROL HETNAM POV (2S)-3-(HEXADECANOYLOXY)-2-[(9Z)-OCTADEC-9- HETNAM 2 POV ENOYLOXY]PROPYL 2-(TRIMETHYLAMMONIO)ETHYL PHOSPHATE HETSYN POV POPC FORMUL 2 NAG 17(C8 H15 N O6) FORMUL 3 MAN 2(C6 H12 O6) FORMUL 15 CLR C27 H46 O FORMUL 16 POV C42 H82 N O8 P HELIX 1 AA1 GLY A 55 CYS A 63 1 9 HELIX 2 AA2 PRO A 64 PHE A 67 5 4 HELIX 3 AA3 ASP A 76 LEU A 87 1 12 HELIX 4 AA4 LEU A 87 SER A 95 1 9 HELIX 5 AA5 CYS A 97 SER A 114 1 18 HELIX 6 AA6 ARG A 116 GLN A 119 5 4 HELIX 7 AA7 GLY A 149 ARG A 161 1 13 HELIX 8 AA8 LYS A 171 LEU A 176 5 6 HELIX 9 AA9 ASN A 185 ASN A 195 1 11 HELIX 10 AB1 LYS A 196 GLY A 199 5 4 HELIX 11 AB2 MET A 268 TRP A 291 1 24 HELIX 12 AB3 VAL A 327 ASN A 349 1 23 HELIX 13 AB4 ASN A 349 SER A 366 1 18 HELIX 14 AB5 GLY A 367 VAL A 371 5 5 HELIX 15 AB6 ASN A 376 SER A 382 1 7 HELIX 16 AB7 SER A 386 PHE A 399 1 14 HELIX 17 AB8 ASP A 436 ILE A 453 1 18 HELIX 18 AB9 THR A 463 CYS A 468 1 6 HELIX 19 AC1 SER A 483 PHE A 488 5 6 HELIX 20 AC2 SER A 491 HIS A 497 1 7 HELIX 21 AC3 ASP A 508 ALA A 519 1 12 HELIX 22 AC4 PHE A 542 VAL A 546 1 5 HELIX 23 AC5 ASN A 554 ALA A 558 5 5 HELIX 24 AC6 THR A 574 ASN A 593 1 20 HELIX 25 AC7 ARG A 607 SER A 617 1 11 HELIX 26 AC8 ASP A 620 LEU A 639 1 20 HELIX 27 AC9 LYS A 653 GLY A 679 1 27 HELIX 28 AD1 ILE A 685 ARG A 711 1 27 HELIX 29 AD2 THR A 719 ALA A 750 1 32 HELIX 30 AD3 MET A 754 LYS A 792 1 39 HELIX 31 AD4 LEU A 817 SER A 824 1 8 HELIX 32 AD5 SER A 824 LEU A 830 1 7 HELIX 33 AD6 MET A 834 VAL A 852 1 19 HELIX 34 AD7 LEU A 853 VAL A 856 5 4 HELIX 35 AD8 SER A 870 LEU A 883 1 14 HELIX 36 AD9 SER A 901 MET A 907 1 7 HELIX 37 AE1 SER A 918 ASP A 930 1 13 HELIX 38 AE2 TRP A 942 LYS A 951 1 10 HELIX 39 AE3 THR A 983 GLN A 988 1 6 HELIX 40 AE4 GLY A 992 ASP A 1005 1 14 HELIX 41 AE5 GLY A 1028 THR A 1031 5 4 HELIX 42 AE6 THR A 1047 GLY A 1070 1 24 HELIX 43 AE7 PHE A 1084 GLU A 1089 1 6 HELIX 44 AE8 GLN A 1090 LEU A 1092 5 3 HELIX 45 AE9 THR A 1093 LEU A 1117 1 25 HELIX 46 AF1 GLU A 1120 GLY A 1146 1 27 HELIX 47 AF2 VAL A 1152 VAL A 1177 1 26 HELIX 48 AF3 SER A 1182 ILE A 1202 1 21 HELIX 49 AF4 ILE A 1202 ALA A 1214 1 13 HELIX 50 AF5 SER A 1218 TYR A 1225 1 8 HELIX 51 AF6 TYR A 1225 GLY A 1252 1 28 SHEET 1 AA1 2 TRP A 27 GLU A 30 0 SHEET 2 AA1 2 ASN A 41 GLU A 43 -1 O CYS A 42 N TYR A 28 SHEET 1 AA2 3 LEU A 121 ALA A 125 0 SHEET 2 AA2 3 GLU A 143 VAL A 148 -1 O GLU A 143 N ALA A 125 SHEET 3 AA2 3 THR A 206 PHE A 209 1 O VAL A 208 N TYR A 146 SHEET 1 AA3 2 ASP A 128 TYR A 129 0 SHEET 2 AA3 2 LYS A 138 THR A 139 -1 O LYS A 138 N TYR A 129 SHEET 1 AA4 4 LEU A 547 GLY A 548 0 SHEET 2 AA4 4 ALA A 560 VAL A 562 -1 O ALA A 560 N GLY A 548 SHEET 3 AA4 4 LEU A 408 ARG A 411 -1 N ILE A 410 O LEU A 561 SHEET 4 AA4 4 SER A 602 PHE A 603 -1 O SER A 602 N ILE A 409 SHEET 1 AA5 2 HIS A 418 TYR A 420 0 SHEET 2 AA5 2 VAL A 429 PHE A 431 -1 O PHE A 431 N HIS A 418 SHEET 1 AA6 4 VAL A1023 ILE A1025 0 SHEET 2 AA6 4 VAL A1033 TYR A1041 -1 O GLY A1034 N ASN A1024 SHEET 3 AA6 4 PRO A 888 LEU A 893 -1 N VAL A 889 O THR A1040 SHEET 4 AA6 4 VAL A1078 TYR A1081 -1 O TYR A1081 N TYR A 890 SHEET 1 AA7 2 ARG A 958 VAL A 959 0 SHEET 2 AA7 2 VAL A 977 ARG A 978 -1 O VAL A 977 N VAL A 959 SSBOND 1 CYS A 25 CYS A 74 1555 1555 2.03 SSBOND 2 CYS A 31 CYS A 42 1555 1555 2.03 SSBOND 3 CYS A 63 CYS A 109 1555 1555 2.03 SSBOND 4 CYS A 75 CYS A 113 1555 1555 2.03 SSBOND 5 CYS A 97 CYS A 238 1555 1555 2.03 SSBOND 6 CYS A 100 CYS A 160 1555 1555 2.03 SSBOND 7 CYS A 177 CYS A 184 1555 1555 2.03 SSBOND 8 CYS A 227 CYS A 243 1555 1555 2.03 SSBOND 9 CYS A 240 CYS A 247 1555 1555 2.03 SSBOND 10 CYS A 468 CYS A 479 1555 1555 2.03 SSBOND 11 CYS A 516 CYS A 533 1555 1555 2.03 SSBOND 12 CYS A 909 CYS A 914 1555 1555 2.02 SSBOND 13 CYS A 956 CYS A 1011 1555 1555 2.03 SSBOND 14 CYS A 957 CYS A 979 1555 1555 2.03 SSBOND 15 CYS A 967 CYS A 976 1555 1555 2.03 LINK ND2 ASN A 158 C1 NAG A1419 1555 1555 1.44 LINK ND2 ASN A 452 C1 NAG A1401 1555 1555 1.44 LINK ND2 ASN A 459 C1 NAG A1402 1555 1555 1.44 LINK ND2 ASN A 478 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 524 C1 NAG A1405 1555 1555 1.44 LINK ND2 ASN A 557 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 598 C1 NAG A1409 1555 1555 1.44 LINK ND2 ASN A 916 C1 NAG A1410 1555 1555 1.44 LINK ND2 ASN A 931 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 961 C1 NAG A1414 1555 1555 1.44 LINK ND2 ASN A 968 C1 NAG A1415 1555 1555 1.44 LINK ND2 ASN A1064 C1 NAG A1416 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O3 NAG C 2 C1 MAN C 3 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 MAN D 3 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 CISPEP 1 SER A 473 PRO A 474 0 2.61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000