HEADER METAL BINDING PROTEIN 17-MAR-20 6W6N TITLE K106L/A131E MUTANT OF CYTOCHROME P460 FROM NITROSOMONAS SP. AL212 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P460; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NITROSOMONAS SP. AL212; SOURCE 3 ORGANISM_TAXID: 153948; SOURCE 4 GENE: NAL212_0896; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B(+) KEYWDS CYTOCHROME C, NH2OH OXIDATION, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.E.COLEMAN,K.M.LANCASTER REVDAT 3 18-OCT-23 6W6N 1 LINK REVDAT 2 08-JUL-20 6W6N 1 JRNL REVDAT 1 24-JUN-20 6W6N 0 JRNL AUTH R.E.COLEMAN,A.C.VILBERT,K.M.LANCASTER JRNL TITL THE HEME-LYS CROSS-LINK IN CYTOCHROME P460 PROMOTES JRNL TITL 2 CATALYSIS BY ENFORCING SECONDARY COORDINATION SPHERE JRNL TITL 3 ARCHITECTURE. JRNL REF BIOCHEMISTRY V. 59 2289 2020 JRNL REFN ISSN 0006-2960 JRNL PMID 32525655 JRNL DOI 10.1021/ACS.BIOCHEM.0C00261 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 20292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.850 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.3830 - 5.4220 0.99 1435 157 0.2032 0.2311 REMARK 3 2 5.4220 - 4.3041 1.00 1355 148 0.1952 0.2354 REMARK 3 3 4.3041 - 3.7602 0.99 1346 146 0.2249 0.2261 REMARK 3 4 3.7602 - 3.4165 0.99 1321 145 0.2623 0.2648 REMARK 3 5 3.4165 - 3.1716 0.99 1315 145 0.2823 0.3003 REMARK 3 6 3.1716 - 2.9846 1.00 1318 143 0.3089 0.3431 REMARK 3 7 2.9846 - 2.8352 1.00 1327 145 0.2986 0.3479 REMARK 3 8 2.8352 - 2.7118 1.00 1316 143 0.3047 0.3471 REMARK 3 9 2.7118 - 2.6074 0.99 1292 141 0.3227 0.3572 REMARK 3 10 2.6074 - 2.5174 1.00 1296 142 0.3525 0.3077 REMARK 3 11 2.5174 - 2.4387 0.99 1315 144 0.3738 0.3973 REMARK 3 12 2.4387 - 2.3690 1.00 1288 140 0.4055 0.3771 REMARK 3 13 2.3690 - 2.3066 0.99 1314 144 0.4194 0.4545 REMARK 3 14 2.3066 - 2.2503 0.82 1055 116 0.4312 0.4533 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FE ATOMS WERE REFINED ANISOTROPICALLY REMARK 4 REMARK 4 6W6N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247621. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20467 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 110.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.15070 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 1.82400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.14_3260 REMARK 200 STARTING MODEL: 6AMG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN IN 50 MM MOPS PH 8.0 PEG 6000, REMARK 280 0.1 M SODIUM ACETATE PH 5.0, AND 0.2 M NACL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.68650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.38350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.08600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.38350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.68650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.08600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 35 REMARK 465 GLY A 36 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 131 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 171 CAC HEC B 201 2.00 REMARK 500 O HOH A 302 O HOH A 325 2.03 REMARK 500 O ALA A 115 O HOH A 301 2.03 REMARK 500 N CYS B 171 O HOH B 301 2.05 REMARK 500 SG CYS A 171 CAC HEC A 201 2.11 REMARK 500 N ALA A 115 O HOH A 301 2.13 REMARK 500 O1D HEC B 201 O HOH B 302 2.15 REMARK 500 N ASN A 67 OE1 GLU A 78 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ASP A 72 NZ LYS B 44 3644 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS B 44 CD LYS B 44 CE -0.175 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 72 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 PHE A 76 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 GLU A 78 C - N - CA ANGL. DEV. = 15.7 DEGREES REMARK 500 LEU B 37 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 LYS B 44 CB - CG - CD ANGL. DEV. = -20.4 DEGREES REMARK 500 LYS B 44 CD - CE - NZ ANGL. DEV. = -18.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 73 85.57 -154.51 REMARK 500 GLU A 78 55.93 -149.71 REMARK 500 PHE A 79 97.96 168.06 REMARK 500 ASP A 136 105.76 -162.49 REMARK 500 CYS A 168 -54.99 -143.69 REMARK 500 LYS B 73 85.56 -151.76 REMARK 500 ASP B 136 107.71 -160.09 REMARK 500 CYS B 168 -53.19 -140.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 77 GLU B 78 -76.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 172 NE2 REMARK 620 2 HEC A 201 NA 97.2 REMARK 620 3 HEC A 201 NB 88.1 88.9 REMARK 620 4 HEC A 201 NC 91.7 170.7 88.8 REMARK 620 5 HEC A 201 ND 95.8 90.3 176.0 91.3 REMARK 620 6 HOH A 302 O 166.6 73.2 82.3 97.6 93.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 172 NE2 REMARK 620 2 HEC B 201 NA 97.2 REMARK 620 3 HEC B 201 NB 91.2 88.3 REMARK 620 4 HEC B 201 NC 84.7 177.4 89.8 REMARK 620 5 HEC B 201 ND 85.8 91.5 176.9 90.4 REMARK 620 6 HOH B 312 O 171.2 75.9 83.3 102.0 99.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC B 201 and CYS B REMARK 800 168 DBREF 6W6N A 35 194 UNP F9ZFJ0 F9ZFJ0_9PROT 35 194 DBREF 6W6N B 35 194 UNP F9ZFJ0 F9ZFJ0_9PROT 35 194 SEQADV 6W6N LEU A 106 UNP F9ZFJ0 LYS 106 ENGINEERED MUTATION SEQADV 6W6N GLU A 131 UNP F9ZFJ0 ALA 131 ENGINEERED MUTATION SEQADV 6W6N LEU B 106 UNP F9ZFJ0 LYS 106 ENGINEERED MUTATION SEQADV 6W6N GLU B 131 UNP F9ZFJ0 ALA 131 ENGINEERED MUTATION SEQRES 1 A 160 LYS GLY LEU ASN TYR GLY SER PHE THR LYS GLU HIS VAL SEQRES 2 A 160 LEU LEU THR PRO LYS GLY TYR ARG GLU TRP VAL PHE ILE SEQRES 3 A 160 GLY ALA SER VAL THR PRO ASN GLU LEU ASN ASP ASP LYS SEQRES 4 A 160 ALA ALA PHE PRO GLU PHE HIS ASN VAL TYR ILE ASP PRO SEQRES 5 A 160 THR SER TRP GLY HIS TRP LYS LYS THR GLY GLU PHE ARG SEQRES 6 A 160 ASP GLY THR VAL ILE VAL LEU GLU LEU ALA GLY VAL GLY SEQRES 7 A 160 SER LYS ALA SER PRO SER GLY ASN GLY TYR PHE PRO GLY SEQRES 8 A 160 GLU PHE ASN GLY ILE GLU ALA MET VAL LYS ASP SER LYS SEQRES 9 A 160 ARG TYR PRO GLU ARG PRO GLY ASN TRP ALA PHE PHE GLY SEQRES 10 A 160 PHE GLU SER TYR GLU ALA LYS GLN GLY ILE ILE GLN THR SEQRES 11 A 160 ASP GLU THR CYS ALA ALA CYS HIS LYS GLU HIS ALA ALA SEQRES 12 A 160 HIS ASP MET VAL PHE THR GLN PHE TYR PRO VAL LEU ARG SEQRES 13 A 160 ALA GLY LYS PRO SEQRES 1 B 160 LYS GLY LEU ASN TYR GLY SER PHE THR LYS GLU HIS VAL SEQRES 2 B 160 LEU LEU THR PRO LYS GLY TYR ARG GLU TRP VAL PHE ILE SEQRES 3 B 160 GLY ALA SER VAL THR PRO ASN GLU LEU ASN ASP ASP LYS SEQRES 4 B 160 ALA ALA PHE PRO GLU PHE HIS ASN VAL TYR ILE ASP PRO SEQRES 5 B 160 THR SER TRP GLY HIS TRP LYS LYS THR GLY GLU PHE ARG SEQRES 6 B 160 ASP GLY THR VAL ILE VAL LEU GLU LEU ALA GLY VAL GLY SEQRES 7 B 160 SER LYS ALA SER PRO SER GLY ASN GLY TYR PHE PRO GLY SEQRES 8 B 160 GLU PHE ASN GLY ILE GLU ALA MET VAL LYS ASP SER LYS SEQRES 9 B 160 ARG TYR PRO GLU ARG PRO GLY ASN TRP ALA PHE PHE GLY SEQRES 10 B 160 PHE GLU SER TYR GLU ALA LYS GLN GLY ILE ILE GLN THR SEQRES 11 B 160 ASP GLU THR CYS ALA ALA CYS HIS LYS GLU HIS ALA ALA SEQRES 12 B 160 HIS ASP MET VAL PHE THR GLN PHE TYR PRO VAL LEU ARG SEQRES 13 B 160 ALA GLY LYS PRO HET HEC A 201 43 HET HEC B 201 43 HETNAM HEC HEME C FORMUL 3 HEC 2(C34 H34 FE N4 O4) FORMUL 5 HOH *43(H2 O) HELIX 1 AA1 GLY A 53 TRP A 57 5 5 HELIX 2 AA2 PRO A 66 ASN A 70 5 5 HELIX 3 AA3 ASP A 85 GLY A 96 1 12 HELIX 4 AA4 ARG A 143 GLY A 145 5 3 HELIX 5 AA5 THR A 164 THR A 167 5 4 HELIX 6 AA6 CYS A 168 ALA A 176 1 9 HELIX 7 AA7 PHE A 182 PHE A 185 5 4 HELIX 8 AA8 TYR A 186 LYS A 193 1 8 HELIX 9 AA9 GLY B 53 TRP B 57 5 5 HELIX 10 AB1 PRO B 66 ASN B 70 5 5 HELIX 11 AB2 ASP B 85 GLY B 96 1 12 HELIX 12 AB3 ARG B 143 GLY B 145 5 3 HELIX 13 AB4 CYS B 168 ALA B 176 1 9 HELIX 14 AB5 PHE B 182 PHE B 185 5 4 HELIX 15 AB6 TYR B 186 LYS B 193 1 8 SHEET 1 AA1 6 VAL A 58 SER A 63 0 SHEET 2 AA1 6 HIS A 80 ILE A 84 -1 O ILE A 84 N VAL A 58 SHEET 3 AA1 6 VAL A 103 SER A 116 -1 O GLU A 107 N ASN A 81 SHEET 4 AA1 6 GLY A 119 LYS A 135 -1 O GLY A 129 N LEU A 108 SHEET 5 AA1 6 TRP A 147 GLY A 151 -1 O PHE A 150 N ALA A 132 SHEET 6 AA1 6 ILE A 161 ILE A 162 -1 O ILE A 161 N GLY A 151 SHEET 1 AA2 6 VAL B 58 VAL B 64 0 SHEET 2 AA2 6 PHE B 79 ILE B 84 -1 O HIS B 80 N SER B 63 SHEET 3 AA2 6 THR B 102 SER B 116 -1 O GLU B 107 N ASN B 81 SHEET 4 AA2 6 GLY B 119 LYS B 135 -1 O GLU B 126 N GLY B 110 SHEET 5 AA2 6 TRP B 147 GLY B 151 -1 O PHE B 150 N ALA B 132 SHEET 6 AA2 6 ILE B 161 ILE B 162 -1 O ILE B 161 N GLY B 151 LINK SG CYS A 168 CAB HEC A 201 1555 1555 1.91 LINK SG CYS B 168 CAB HEC B 201 1555 1555 1.72 LINK NE2 HIS A 172 FE HEC A 201 1555 1555 2.11 LINK FE HEC A 201 O HOH A 302 1555 1555 2.59 LINK NE2 HIS B 172 FE HEC B 201 1555 1555 2.21 LINK FE HEC B 201 O HOH B 312 1555 1555 2.75 CISPEP 1 PRO A 77 GLU A 78 0 -7.89 SITE 1 AC1 21 PHE A 76 HIS A 80 ILE A 104 LEU A 106 SITE 2 AC1 21 GLU A 131 MET A 133 PHE A 150 THR A 167 SITE 3 AC1 21 CYS A 168 CYS A 171 HIS A 172 MET A 180 SITE 4 AC1 21 VAL A 181 PHE A 182 PHE A 185 TYR A 186 SITE 5 AC1 21 HOH A 302 HOH A 313 SER B 116 PRO B 117 SITE 6 AC1 21 SER B 118 SITE 1 AC2 27 SER A 116 PRO A 117 SER A 118 SER B 63 SITE 2 AC2 27 PHE B 76 HIS B 80 ILE B 104 LEU B 106 SITE 3 AC2 27 GLU B 131 MET B 133 PHE B 149 PHE B 150 SITE 4 AC2 27 ASP B 165 GLU B 166 THR B 167 ALA B 169 SITE 5 AC2 27 ALA B 170 CYS B 171 HIS B 172 MET B 180 SITE 6 AC2 27 VAL B 181 PHE B 182 PHE B 185 TYR B 186 SITE 7 AC2 27 HOH B 302 HOH B 311 HOH B 312 CRYST1 47.373 80.172 110.767 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021109 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012473 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009028 0.00000