data_6W9P # _entry.id 6W9P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6W9P pdb_00006w9p 10.2210/pdb6w9p/pdb WWPDB D_1000247768 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6W9P _pdbx_database_status.recvd_initial_deposition_date 2020-03-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'McCarthy, S.E.' 1 0000-0002-1063-1784 'Yatsunyk, L.A.' 2 0000-0003-3946-0939 'Beseiso, D.' 3 0000-0003-3743-9175 'Miao, J.' 4 0000-0001-6488-7470 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 50 _citation.language ? _citation.page_first 2959 _citation.page_last 2972 _citation.title 'The first crystal structures of hybrid and parallel four-tetrad intramolecular G-quadruplexes.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkac091 _citation.pdbx_database_id_PubMed 35212369 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Beseiso, D.' 1 ? primary 'Chen, E.V.' 2 ? primary 'McCarthy, S.E.' 3 ? primary 'Martin, K.N.' 4 ? primary 'Gallagher, E.P.' 5 ? primary 'Miao, J.' 6 ? primary 'Yatsunyk, L.A.' 7 0000-0003-3946-0939 # _cell.entry_id 6W9P _cell.length_a 38.681 _cell.length_b 38.681 _cell.length_c 64.921 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W9P _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*GP*TP*TP*GP*GP*GP*GP*TP*TP*GP*GP*GP*GP*TP*TP*GP*GP*GP*GP*TP*TP*GP*GP*GP*GP*T)-3') ; 8289.277 1 ? ? ? 'DT26 has no base and only the phosphate is modeled.' 2 non-polymer syn 'POTASSIUM ION' 39.098 3 ? ? ? ? 3 non-polymer nat 'SODIUM ION' 22.990 1 ? ? ? ? 4 water nat water 18.015 30 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DG)(DT)(DT)(DG)(DG)(DG)(DG)(DT)(DT)(DG)(DG)(DG)(DG)(DT)(DT)(DG)(DG)(DG)(DG)(DT) (DT)(DG)(DG)(DG)(DG)(DT) ; _entity_poly.pdbx_seq_one_letter_code_can GTTGGGGTTGGGGTTGGGGTTGGGGT _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DT n 1 3 DT n 1 4 DG n 1 5 DG n 1 6 DG n 1 7 DG n 1 8 DT n 1 9 DT n 1 10 DG n 1 11 DG n 1 12 DG n 1 13 DG n 1 14 DT n 1 15 DT n 1 16 DG n 1 17 DG n 1 18 DG n 1 19 DG n 1 20 DT n 1 21 DT n 1 22 DG n 1 23 DG n 1 24 DG n 1 25 DG n 1 26 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 26 _pdbx_entity_src_syn.organism_scientific 'Tetrahymena thermophila' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 5911 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6W9P _struct_ref.pdbx_db_accession 6W9P _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6W9P _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 26 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6W9P _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 26 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 26 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6W9P _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.73 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 29.1 _exptl_crystal.description 'relatively think sheets, look clam-shell shaped.' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details 'Crystals grown at room temperature.' _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '32% PEG 2000, 0.3M sodium chloride, 0.05M sodium cacodylate pH 6.5' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 196 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-02-13 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Cryogenically-cooled single crystal' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9791 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9791 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_synchrotron_site APS # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 6W9P _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 64.900 _reflns.d_resolution_high 1.990 _reflns.number_obs 4116 _reflns.number_all ? _reflns.percent_possible_obs 99.1 _reflns.pdbx_Rmerge_I_obs 0.09900 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.1000 _reflns.B_iso_Wilson_estimate 45.95 _reflns.pdbx_redundancy 5.800 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.99 _reflns_shell.d_res_low 2.10 _reflns_shell.percent_possible_all 94.6 _reflns_shell.Rmerge_I_obs 0.87500 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.600 _reflns_shell.pdbx_redundancy 4.60 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 6W9P _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 4078 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.370 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.50 _refine.ls_d_res_high 1.99 _refine.ls_percent_reflns_obs 98.5 _refine.ls_R_factor_obs 0.199 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.197 _refine.ls_R_factor_R_free 0.209 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.830 _refine.ls_number_reflns_R_free 401 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 51.94 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model 1O0K _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'GEOSTD + MONOMER LIBRARY + CDL V1.2' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 'random selection' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.234 _refine.pdbx_overall_phase_error 33.504 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 551 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 30 _refine_hist.number_atoms_total 585 _refine_hist.d_res_high 1.99 _refine_hist.d_res_low 33.50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.005 ? ? 619 'X-RAY DIFFRACTION' ? f_angle_d 0.722 ? ? 961 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 34.657 ? ? 256 'X-RAY DIFFRACTION' ? f_chiral_restr 0.036 ? ? 103 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 26 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.9900 2.2800 1175 0.2712 97.00 0.3365 . . 134 . . 'X-RAY DIFFRACTION' . 2.2800 2.8700 1213 0.2614 100.00 0.3029 . . 125 . . 'X-RAY DIFFRACTION' . 2.8700 33.5000 1289 0.1694 99.00 0.1748 . . 142 . . # _struct.entry_id 6W9P _struct.title 'Tel26 Parallel Four-quartet G-quadruplex with K+' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6W9P _struct_keywords.text 'G-quadruplex, Parallel, Four-quartets, propeller loops, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DT 3 O2 ? ? ? 1_555 E NA . NA ? ? A DT 3 A NA 104 6_555 ? ? ? ? ? ? ? 2.644 ? ? metalc2 metalc ? ? A DG 4 O6 ? ? ? 1_555 B K . K ? ? A DG 4 A K 101 1_555 ? ? ? ? ? ? ? 2.666 ? ? metalc3 metalc ? ? A DG 5 O6 ? ? ? 1_555 B K . K ? ? A DG 5 A K 101 1_555 ? ? ? ? ? ? ? 2.918 ? ? metalc4 metalc ? ? A DG 5 O6 ? ? ? 1_555 C K . K ? ? A DG 5 A K 102 1_555 ? ? ? ? ? ? ? 2.660 ? ? metalc5 metalc ? ? A DG 6 O6 ? ? ? 1_555 C K . K ? ? A DG 6 A K 102 1_555 ? ? ? ? ? ? ? 2.690 ? ? metalc6 metalc ? ? A DG 6 O6 ? ? ? 1_555 D K . K ? ? A DG 6 A K 103 1_555 ? ? ? ? ? ? ? 3.023 ? ? metalc7 metalc ? ? A DG 7 O6 ? ? ? 1_555 D K . K ? ? A DG 7 A K 103 1_555 ? ? ? ? ? ? ? 2.640 ? ? metalc8 metalc ? ? A DG 10 O6 ? ? ? 1_555 B K . K ? ? A DG 10 A K 101 1_555 ? ? ? ? ? ? ? 2.623 ? ? metalc9 metalc ? ? A DG 11 O6 ? ? ? 1_555 B K . K ? ? A DG 11 A K 101 1_555 ? ? ? ? ? ? ? 2.738 ? ? metalc10 metalc ? ? A DG 11 O6 ? ? ? 1_555 C K . K ? ? A DG 11 A K 102 1_555 ? ? ? ? ? ? ? 2.757 ? ? metalc11 metalc ? ? A DG 12 O6 ? ? ? 1_555 C K . K ? ? A DG 12 A K 102 1_555 ? ? ? ? ? ? ? 2.806 ? ? metalc12 metalc ? ? A DG 12 O6 ? ? ? 1_555 D K . K ? ? A DG 12 A K 103 1_555 ? ? ? ? ? ? ? 2.858 ? ? metalc13 metalc ? ? A DG 13 O6 ? ? ? 1_555 D K . K ? ? A DG 13 A K 103 1_555 ? ? ? ? ? ? ? 2.776 ? ? metalc14 metalc ? ? A DG 16 O6 ? ? ? 1_555 B K . K ? ? A DG 16 A K 101 1_555 ? ? ? ? ? ? ? 2.484 ? ? metalc15 metalc ? ? A DG 17 O6 ? ? ? 1_555 B K . K ? ? A DG 17 A K 101 1_555 ? ? ? ? ? ? ? 3.171 ? ? metalc16 metalc ? ? A DG 17 O6 ? ? ? 1_555 C K . K ? ? A DG 17 A K 102 1_555 ? ? ? ? ? ? ? 2.782 ? ? metalc17 metalc ? ? A DG 17 OP1 ? ? ? 1_555 E NA . NA ? ? A DG 17 A NA 104 1_555 ? ? ? ? ? ? ? 2.560 ? ? metalc18 metalc ? ? A DG 18 O6 ? ? ? 1_555 C K . K ? ? A DG 18 A K 102 1_555 ? ? ? ? ? ? ? 2.876 ? ? metalc19 metalc ? ? A DG 18 O6 ? ? ? 1_555 D K . K ? ? A DG 18 A K 103 1_555 ? ? ? ? ? ? ? 2.746 ? ? metalc20 metalc ? ? A DG 19 O6 ? ? ? 1_555 D K . K ? ? A DG 19 A K 103 1_555 ? ? ? ? ? ? ? 2.728 ? ? metalc21 metalc ? ? A DG 22 O6 ? ? ? 1_555 B K . K ? ? A DG 22 A K 101 1_555 ? ? ? ? ? ? ? 2.467 ? ? metalc22 metalc ? ? A DG 23 O6 ? ? ? 1_555 B K . K ? ? A DG 23 A K 101 1_555 ? ? ? ? ? ? ? 3.414 ? ? metalc23 metalc ? ? A DG 23 O6 ? ? ? 1_555 C K . K ? ? A DG 23 A K 102 1_555 ? ? ? ? ? ? ? 2.723 ? ? metalc24 metalc ? ? A DG 24 O6 ? ? ? 1_555 C K . K ? ? A DG 24 A K 102 1_555 ? ? ? ? ? ? ? 2.895 ? ? metalc25 metalc ? ? A DG 24 O6 ? ? ? 1_555 D K . K ? ? A DG 24 A K 103 1_555 ? ? ? ? ? ? ? 2.801 ? ? metalc26 metalc ? ? A DG 25 O6 ? ? ? 1_555 D K . K ? ? A DG 25 A K 103 1_555 ? ? ? ? ? ? ? 2.632 ? ? metalc27 metalc ? ? E NA . NA ? ? ? 1_555 F HOH . O ? ? A NA 104 A HOH 213 1_555 ? ? ? ? ? ? ? 2.355 ? ? metalc28 metalc ? ? E NA . NA ? ? ? 1_555 F HOH . O ? ? A NA 104 A HOH 221 1_555 ? ? ? ? ? ? ? 2.358 ? ? metalc29 metalc ? ? E NA . NA ? ? ? 1_555 F HOH . O ? ? A NA 104 A HOH 224 1_555 ? ? ? ? ? ? ? 2.738 ? ? metalc30 metalc ? ? E NA . NA ? ? ? 1_555 F HOH . O ? ? A NA 104 A HOH 229 1_555 ? ? ? ? ? ? ? 2.507 ? ? hydrog1 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 4 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 4 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 4 N7 ? ? ? 1_555 A DG 22 N2 ? ? A DG 4 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DG 22 N1 ? ? A DG 4 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DG 11 O6 ? ? A DG 5 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DG 11 N7 ? ? A DG 5 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 5 N7 ? ? ? 1_555 A DG 23 N2 ? ? A DG 5 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DG 23 N1 ? ? A DG 5 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 6 N3 ? ? ? 1_555 A DT 9 N3 ? ? A DG 6 A DT 9 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog10 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DG 12 O6 ? ? A DG 6 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DG 12 N7 ? ? A DG 6 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 6 N7 ? ? ? 1_555 A DG 24 N2 ? ? A DG 6 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DG 24 N1 ? ? A DG 6 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DG 13 O6 ? ? A DG 7 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DG 13 N7 ? ? A DG 7 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 7 N7 ? ? ? 1_555 A DG 25 N2 ? ? A DG 7 A DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DG 25 N1 ? ? A DG 7 A DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 16 O6 ? ? A DG 10 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 16 N7 ? ? A DG 10 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 11 N2 ? ? ? 1_555 A DT 15 O2 ? ? A DG 11 A DT 15 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog21 hydrog ? ? A DG 11 N1 ? ? ? 1_555 A DG 17 O6 ? ? A DG 11 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 11 N2 ? ? ? 1_555 A DG 17 N7 ? ? A DG 11 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 12 N3 ? ? ? 1_555 A DT 15 N3 ? ? A DG 12 A DT 15 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog24 hydrog ? ? A DG 12 N1 ? ? ? 1_555 A DG 18 O6 ? ? A DG 12 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 12 N2 ? ? ? 1_555 A DG 18 N7 ? ? A DG 12 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A DG 13 N1 ? ? ? 1_555 A DG 19 O6 ? ? A DG 13 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A DG 13 N2 ? ? ? 1_555 A DG 19 N7 ? ? A DG 13 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A DG 16 N1 ? ? ? 1_555 A DG 22 O6 ? ? A DG 16 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? A DG 16 N2 ? ? ? 1_555 A DG 22 N7 ? ? A DG 16 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? A DG 17 N1 ? ? ? 1_555 A DG 23 O6 ? ? A DG 17 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? A DG 17 N2 ? ? ? 1_555 A DG 23 N7 ? ? A DG 17 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? A DG 18 N2 ? ? ? 1_555 A DT 21 O2 ? ? A DG 18 A DT 21 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog33 hydrog ? ? A DG 18 N1 ? ? ? 1_555 A DG 24 O6 ? ? A DG 18 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog34 hydrog ? ? A DG 18 N2 ? ? ? 1_555 A DG 24 N7 ? ? A DG 18 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog35 hydrog ? ? A DG 19 N1 ? ? ? 1_555 A DG 25 O6 ? ? A DG 19 A DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog36 hydrog ? ? A DG 19 N2 ? ? ? 1_555 A DG 25 N7 ? ? A DG 19 A DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _atom_sites.entry_id 6W9P _atom_sites.fract_transf_matrix[1][1] 0.025852 _atom_sites.fract_transf_matrix[1][2] 0.014926 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029852 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015403 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? K ? ? 16.37977 2.54835 ? ? 4.54127 84.28225 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? ? ? ? ? ? ? ? ? ? ? ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DG 11 11 11 DG DG A . n A 1 12 DG 12 12 12 DG DG A . n A 1 13 DG 13 13 13 DG DG A . n A 1 14 DT 14 14 14 DT DT A . n A 1 15 DT 15 15 15 DT DT A . n A 1 16 DG 16 16 16 DG DG A . n A 1 17 DG 17 17 17 DG DG A . n A 1 18 DG 18 18 18 DG DG A . n A 1 19 DG 19 19 19 DG DG A . n A 1 20 DT 20 20 20 DT DT A . n A 1 21 DT 21 21 21 DT DT A . n A 1 22 DG 22 22 22 DG DG A . n A 1 23 DG 23 23 23 DG DG A . n A 1 24 DG 24 24 24 DG DG A . n A 1 25 DG 25 25 25 DG DG A . n A 1 26 DT 26 26 26 DT DT A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K 1 101 101 K K A . C 2 K 1 102 102 K K A . D 2 K 1 103 103 K K A . E 3 NA 1 104 104 NA NA A . F 4 HOH 1 201 201 HOH HOH A . F 4 HOH 2 202 202 HOH HOH A . F 4 HOH 3 203 203 HOH HOH A . F 4 HOH 4 204 204 HOH HOH A . F 4 HOH 5 205 205 HOH HOH A . F 4 HOH 6 206 206 HOH HOH A . F 4 HOH 7 207 207 HOH HOH A . F 4 HOH 8 208 208 HOH HOH A . F 4 HOH 9 209 209 HOH HOH A . F 4 HOH 10 210 210 HOH HOH A . F 4 HOH 11 211 211 HOH HOH A . F 4 HOH 12 212 212 HOH HOH A . F 4 HOH 13 213 213 HOH HOH A . F 4 HOH 14 214 214 HOH HOH A . F 4 HOH 15 215 215 HOH HOH A . F 4 HOH 16 216 216 HOH HOH A . F 4 HOH 17 217 217 HOH HOH A . F 4 HOH 18 218 218 HOH HOH A . F 4 HOH 19 219 219 HOH HOH A . F 4 HOH 20 220 220 HOH HOH A . F 4 HOH 21 221 221 HOH HOH A . F 4 HOH 22 222 222 HOH HOH A . F 4 HOH 23 223 223 HOH HOH A . F 4 HOH 24 224 224 HOH HOH A . F 4 HOH 25 225 225 HOH HOH A . F 4 HOH 26 226 226 HOH HOH A . F 4 HOH 27 227 227 HOH HOH A . F 4 HOH 28 228 228 HOH HOH A . F 4 HOH 29 229 229 HOH HOH A . F 4 HOH 30 230 230 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O2 ? A DT 3 ? A DT 3 ? 1_555 NA ? E NA . ? A NA 104 ? 6_555 OP1 ? A DG 17 ? A DG 17 ? 1_555 117.8 ? 2 O2 ? A DT 3 ? A DT 3 ? 1_555 NA ? E NA . ? A NA 104 ? 6_555 O ? F HOH . ? A HOH 213 ? 1_555 121.4 ? 3 OP1 ? A DG 17 ? A DG 17 ? 1_555 NA ? E NA . ? A NA 104 ? 6_555 O ? F HOH . ? A HOH 213 ? 1_555 3.9 ? 4 O2 ? A DT 3 ? A DT 3 ? 1_555 NA ? E NA . ? A NA 104 ? 6_555 O ? F HOH . ? A HOH 221 ? 1_555 126.7 ? 5 OP1 ? A DG 17 ? A DG 17 ? 1_555 NA ? E NA . ? A NA 104 ? 6_555 O ? F HOH . ? A HOH 221 ? 1_555 11.3 ? 6 O ? F HOH . ? A HOH 213 ? 1_555 NA ? E NA . ? A NA 104 ? 6_555 O ? F HOH . ? A HOH 221 ? 1_555 10.0 ? 7 O2 ? A DT 3 ? A DT 3 ? 1_555 NA ? E NA . ? A NA 104 ? 6_555 O ? F HOH . ? A HOH 224 ? 1_555 108.5 ? 8 OP1 ? A DG 17 ? A DG 17 ? 1_555 NA ? E NA . ? A NA 104 ? 6_555 O ? F HOH . ? A HOH 224 ? 1_555 10.8 ? 9 O ? F HOH . ? A HOH 213 ? 1_555 NA ? E NA . ? A NA 104 ? 6_555 O ? F HOH . ? A HOH 224 ? 1_555 14.7 ? 10 O ? F HOH . ? A HOH 221 ? 1_555 NA ? E NA . ? A NA 104 ? 6_555 O ? F HOH . ? A HOH 224 ? 1_555 18.3 ? 11 O2 ? A DT 3 ? A DT 3 ? 1_555 NA ? E NA . ? A NA 104 ? 6_555 O ? F HOH . ? A HOH 229 ? 1_555 118.2 ? 12 OP1 ? A DG 17 ? A DG 17 ? 1_555 NA ? E NA . ? A NA 104 ? 6_555 O ? F HOH . ? A HOH 229 ? 1_555 13.3 ? 13 O ? F HOH . ? A HOH 213 ? 1_555 NA ? E NA . ? A NA 104 ? 6_555 O ? F HOH . ? A HOH 229 ? 1_555 15.0 ? 14 O ? F HOH . ? A HOH 221 ? 1_555 NA ? E NA . ? A NA 104 ? 6_555 O ? F HOH . ? A HOH 229 ? 1_555 10.2 ? 15 O ? F HOH . ? A HOH 224 ? 1_555 NA ? E NA . ? A NA 104 ? 6_555 O ? F HOH . ? A HOH 229 ? 1_555 12.7 ? 16 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 5 ? A DG 5 ? 1_555 73.0 ? 17 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 79.5 ? 18 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 89.2 ? 19 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 136.7 ? 20 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 68.6 ? 21 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 80.6 ? 22 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 128.1 ? 23 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 151.2 ? 24 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 77.8 ? 25 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 83.8 ? 26 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 140.0 ? 27 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 94.6 ? 28 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 139.4 ? 29 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 63.6 ? 30 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 79.8 ? 31 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 81.7 ? 32 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 123.7 ? 33 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 134.6 ? 34 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 137.1 ? 35 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 82.2 ? 36 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 74.1 ? 37 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 82.5 ? 38 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 60.0 ? 39 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 147.8 ? 40 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 94.9 ? 41 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 133.7 ? 42 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 59.1 ? 43 O6 ? A DG 22 ? A DG 22 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 67.6 ? 44 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 74.4 ? 45 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 72.2 ? 46 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 95.1 ? 47 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 133.3 ? 48 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 73.0 ? 49 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 78.4 ? 50 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 110.8 ? 51 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 159.4 ? 52 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 69.0 ? 53 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 90.6 ? 54 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 154.3 ? 55 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 107.0 ? 56 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 131.9 ? 57 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 68.7 ? 58 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 77.2 ? 59 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 72.7 ? 60 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 127.2 ? 61 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 112.4 ? 62 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 153.6 ? 63 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 72.5 ? 64 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 87.4 ? 65 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 94.3 ? 66 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 68.9 ? 67 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 161.7 ? 68 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 104.0 ? 69 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 128.6 ? 70 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 63.9 ? 71 O6 ? A DG 23 ? A DG 23 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 73.6 ? 72 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 74.5 ? 73 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 67.5 ? 74 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 86.7 ? 75 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 129.9 ? 76 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 74.3 ? 77 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 72.5 ? 78 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 101.7 ? 79 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 155.4 ? 80 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 69.8 ? 81 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 91.2 ? 82 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 155.8 ? 83 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 122.0 ? 84 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 126.5 ? 85 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 74.0 ? 86 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 70.6 ? 87 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 65.7 ? 88 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 129.0 ? 89 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 105.1 ? 90 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 156.7 ? 91 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 66.8 ? 92 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 90.5 ? 93 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 93.1 ? 94 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 78.6 ? 95 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 158.3 ? 96 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 117.7 ? 97 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 126.0 ? 98 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 75.1 ? 99 O6 ? A DG 24 ? A DG 24 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 73.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-03-31 2 'Structure model' 1 1 2022-04-13 3 'Structure model' 1 2 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' database_2 4 3 'Structure model' chem_comp_atom 5 3 'Structure model' chem_comp_bond 6 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' 13 2 'Structure model' '_database_2.pdbx_DOI' 14 2 'Structure model' '_database_2.pdbx_database_accession' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z+1/3 3 -x+y,-x,z+2/3 4 x-y,-y,-z+2/3 5 -x,-x+y,-z+1/3 6 y,x,-z # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -10.6721 _pdbx_refine_tls.origin_y 6.7064 _pdbx_refine_tls.origin_z 6.0994 _pdbx_refine_tls.T[1][1] 0.2773 _pdbx_refine_tls.T[2][2] 0.2304 _pdbx_refine_tls.T[3][3] 0.3496 _pdbx_refine_tls.T[1][2] -0.0386 _pdbx_refine_tls.T[1][3] -0.0290 _pdbx_refine_tls.T[2][3] 0.0086 _pdbx_refine_tls.L[1][1] 4.7352 _pdbx_refine_tls.L[2][2] 3.9951 _pdbx_refine_tls.L[3][3] 4.2361 _pdbx_refine_tls.L[1][2] -0.1951 _pdbx_refine_tls.L[1][3] -1.0946 _pdbx_refine_tls.L[2][3] 0.9459 _pdbx_refine_tls.S[1][1] -0.1037 _pdbx_refine_tls.S[1][2] 0.0531 _pdbx_refine_tls.S[1][3] 0.0650 _pdbx_refine_tls.S[2][1] -0.2871 _pdbx_refine_tls.S[2][2] -0.0400 _pdbx_refine_tls.S[2][3] -0.0467 _pdbx_refine_tls.S[3][1] -0.4820 _pdbx_refine_tls.S[3][2] -0.0937 _pdbx_refine_tls.S[3][3] 0.1731 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ALL # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.17.1_3660 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 5 # _pdbx_entry_details.entry_id 6W9P _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DG OP3 O N N 1 DG P P N N 2 DG OP1 O N N 3 DG OP2 O N N 4 DG "O5'" O N N 5 DG "C5'" C N N 6 DG "C4'" C N R 7 DG "O4'" O N N 8 DG "C3'" C N S 9 DG "O3'" O N N 10 DG "C2'" C N N 11 DG "C1'" C N R 12 DG N9 N Y N 13 DG C8 C Y N 14 DG N7 N Y N 15 DG C5 C Y N 16 DG C6 C N N 17 DG O6 O N N 18 DG N1 N N N 19 DG C2 C N N 20 DG N2 N N N 21 DG N3 N N N 22 DG C4 C Y N 23 DG HOP3 H N N 24 DG HOP2 H N N 25 DG "H5'" H N N 26 DG "H5''" H N N 27 DG "H4'" H N N 28 DG "H3'" H N N 29 DG "HO3'" H N N 30 DG "H2'" H N N 31 DG "H2''" H N N 32 DG "H1'" H N N 33 DG H8 H N N 34 DG H1 H N N 35 DG H21 H N N 36 DG H22 H N N 37 DT OP3 O N N 38 DT P P N N 39 DT OP1 O N N 40 DT OP2 O N N 41 DT "O5'" O N N 42 DT "C5'" C N N 43 DT "C4'" C N R 44 DT "O4'" O N N 45 DT "C3'" C N S 46 DT "O3'" O N N 47 DT "C2'" C N N 48 DT "C1'" C N R 49 DT N1 N N N 50 DT C2 C N N 51 DT O2 O N N 52 DT N3 N N N 53 DT C4 C N N 54 DT O4 O N N 55 DT C5 C N N 56 DT C7 C N N 57 DT C6 C N N 58 DT HOP3 H N N 59 DT HOP2 H N N 60 DT "H5'" H N N 61 DT "H5''" H N N 62 DT "H4'" H N N 63 DT "H3'" H N N 64 DT "HO3'" H N N 65 DT "H2'" H N N 66 DT "H2''" H N N 67 DT "H1'" H N N 68 DT H3 H N N 69 DT H71 H N N 70 DT H72 H N N 71 DT H73 H N N 72 DT H6 H N N 73 HOH O O N N 74 HOH H1 H N N 75 HOH H2 H N N 76 K K K N N 77 NA NA NA N N 78 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DG OP3 P sing N N 1 DG OP3 HOP3 sing N N 2 DG P OP1 doub N N 3 DG P OP2 sing N N 4 DG P "O5'" sing N N 5 DG OP2 HOP2 sing N N 6 DG "O5'" "C5'" sing N N 7 DG "C5'" "C4'" sing N N 8 DG "C5'" "H5'" sing N N 9 DG "C5'" "H5''" sing N N 10 DG "C4'" "O4'" sing N N 11 DG "C4'" "C3'" sing N N 12 DG "C4'" "H4'" sing N N 13 DG "O4'" "C1'" sing N N 14 DG "C3'" "O3'" sing N N 15 DG "C3'" "C2'" sing N N 16 DG "C3'" "H3'" sing N N 17 DG "O3'" "HO3'" sing N N 18 DG "C2'" "C1'" sing N N 19 DG "C2'" "H2'" sing N N 20 DG "C2'" "H2''" sing N N 21 DG "C1'" N9 sing N N 22 DG "C1'" "H1'" sing N N 23 DG N9 C8 sing Y N 24 DG N9 C4 sing Y N 25 DG C8 N7 doub Y N 26 DG C8 H8 sing N N 27 DG N7 C5 sing Y N 28 DG C5 C6 sing N N 29 DG C5 C4 doub Y N 30 DG C6 O6 doub N N 31 DG C6 N1 sing N N 32 DG N1 C2 sing N N 33 DG N1 H1 sing N N 34 DG C2 N2 sing N N 35 DG C2 N3 doub N N 36 DG N2 H21 sing N N 37 DG N2 H22 sing N N 38 DG N3 C4 sing N N 39 DT OP3 P sing N N 40 DT OP3 HOP3 sing N N 41 DT P OP1 doub N N 42 DT P OP2 sing N N 43 DT P "O5'" sing N N 44 DT OP2 HOP2 sing N N 45 DT "O5'" "C5'" sing N N 46 DT "C5'" "C4'" sing N N 47 DT "C5'" "H5'" sing N N 48 DT "C5'" "H5''" sing N N 49 DT "C4'" "O4'" sing N N 50 DT "C4'" "C3'" sing N N 51 DT "C4'" "H4'" sing N N 52 DT "O4'" "C1'" sing N N 53 DT "C3'" "O3'" sing N N 54 DT "C3'" "C2'" sing N N 55 DT "C3'" "H3'" sing N N 56 DT "O3'" "HO3'" sing N N 57 DT "C2'" "C1'" sing N N 58 DT "C2'" "H2'" sing N N 59 DT "C2'" "H2''" sing N N 60 DT "C1'" N1 sing N N 61 DT "C1'" "H1'" sing N N 62 DT N1 C2 sing N N 63 DT N1 C6 sing N N 64 DT C2 O2 doub N N 65 DT C2 N3 sing N N 66 DT N3 C4 sing N N 67 DT N3 H3 sing N N 68 DT C4 O4 doub N N 69 DT C4 C5 sing N N 70 DT C5 C7 sing N N 71 DT C5 C6 doub N N 72 DT C7 H71 sing N N 73 DT C7 H72 sing N N 74 DT C7 H73 sing N N 75 DT C6 H6 sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6W9P 'double helix' 6W9P 'quadruple helix' # _ndb_struct_na_base_pair.model_number 1 _ndb_struct_na_base_pair.i_label_asym_id A _ndb_struct_na_base_pair.i_label_comp_id DG _ndb_struct_na_base_pair.i_label_seq_id 5 _ndb_struct_na_base_pair.i_symmetry 1_555 _ndb_struct_na_base_pair.j_label_asym_id A _ndb_struct_na_base_pair.j_label_comp_id DG _ndb_struct_na_base_pair.j_label_seq_id 11 _ndb_struct_na_base_pair.j_symmetry 1_555 _ndb_struct_na_base_pair.shear 1.487 _ndb_struct_na_base_pair.stretch 3.599 _ndb_struct_na_base_pair.stagger -0.046 _ndb_struct_na_base_pair.buckle 2.924 _ndb_struct_na_base_pair.propeller -3.694 _ndb_struct_na_base_pair.opening -90.501 _ndb_struct_na_base_pair.pair_number 1 _ndb_struct_na_base_pair.pair_name A_DG5:DG11_A _ndb_struct_na_base_pair.i_auth_asym_id A _ndb_struct_na_base_pair.i_auth_seq_id 5 _ndb_struct_na_base_pair.i_PDB_ins_code ? _ndb_struct_na_base_pair.j_auth_asym_id A _ndb_struct_na_base_pair.j_auth_seq_id 11 _ndb_struct_na_base_pair.j_PDB_ins_code ? _ndb_struct_na_base_pair.hbond_type_28 6 _ndb_struct_na_base_pair.hbond_type_12 3 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Cancer Institute (NIH/NCI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 1R15CA208676-01A1 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 'SODIUM ION' NA 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1O0K _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ;determined purity and homogeneity of the samples; the sample exist as a monomer, but on the gel three bands were obvious and the crystallized samples clearly represents only one of those bands. We have also conducted Circular Dichroism spectroscopy to obtaine conformation information - parallel vs antiparallel as well as CD thermal melting studies to obtain stability information. ; # _space_group.name_H-M_alt 'P 31 2 1' _space_group.name_Hall ;P 31 2" ; _space_group.IT_number 152 _space_group.crystal_system trigonal _space_group.id 1 #