HEADER TOXIN 24-MAR-20 6WA1 TITLE DIMERIC FORM OF THE TRANS-STABILIZED HEMOLYSIN II C-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOLYSIN II; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN (UNP RESIDUES 319-412); COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS (STRAIN ATCC 14579 / DSM 31 / SOURCE 3 JCM 2152 / NBRC 15305 / NCIMB 9373 / NRRL B-3711); SOURCE 4 ORGANISM_TAXID: 226900; SOURCE 5 STRAIN: ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / SOURCE 6 NRRL B-3711; SOURCE 7 ATCC: 14579; SOURCE 8 GENE: BC_3523; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS DOMAIN SWAPPED DIMER, TOXIN EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR A.R.KAPLAN,A.T.ALEXANDRESCU REVDAT 4 14-JUN-23 6WA1 1 REMARK REVDAT 3 28-APR-21 6WA1 1 JRNL REVDAT 2 31-MAR-21 6WA1 1 JRNL REVDAT 1 24-MAR-21 6WA1 0 JRNL AUTH A.R.KAPLAN,R.OLSON,A.T.ALEXANDRESCU JRNL TITL PROTEIN YOGA: CONFORMATIONAL VERSATILITY OF THE HEMOLYSIN II JRNL TITL 2 C-TERMINAL DOMAIN DETAILED BY NMR STRUCTURES FOR MULTIPLE JRNL TITL 3 STATES. JRNL REF PROTEIN SCI. V. 30 990 2021 JRNL REFN ESSN 1469-896X JRNL PMID 33733504 JRNL DOI 10.1002/PRO.4066 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.R.KAPLAN,K.KAUS,S.DE,R.OLSON,A.T.ALEXANDRESCU REMARK 1 TITL NMR STRUCTURE OF THE BACILLUS CEREUS HEMOLYSIN II C-TERMINAL REMARK 1 TITL 2 DOMAIN REVEALS A NOVEL FOLD. REMARK 1 REF SCI REP V. 7 3277 2017 REMARK 1 REFN ESSN 2045-2322 REMARK 1 PMID 28607368 REMARK 1 DOI 10.1038/S41598-017-02917-4 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.R.KAPLAN,M.W.MACIEJEWSKI,R.OLSON,A.T.ALEXANDRESCU REMARK 1 TITL NMR ASSIGNMENTS FOR THE CIS AND TRANS FORMS OF THE HEMOLYSIN REMARK 1 TITL 2 II C-TERMINAL DOMAIN. REMARK 1 REF BIOMOL.NMR ASSIGN. V. 8 419 2014 REMARK 1 REFN ESSN 1874-270X REMARK 1 PMID 24234348 REMARK 1 DOI 10.1007/S12104-013-9530-2 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WA1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000246632. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303.15 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-99% 13C; U-99% 15N] REMARK 210 HLYIIC, 20 MM SODIUM PHOSPHATE, REMARK 210 1 MM EDTA, 0.05 % W/V SODIUM REMARK 210 AZIDE, 1 MM AEBSF PROTEASE REMARK 210 INHIBITOR, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 HNCO; 3D 1H-15N NOESY; 3D 1H-15N REMARK 210 TOCSY; 3D 1H-13C NOESY (EDITED); REMARK 210 3D 1H-13C NOESY (FILTERED) REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS 2.4, TALOS TALOS REMARK 210 -N, NMRPIPE, NMRDRAW, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ILE B 56 HZ3 LYS B 62 1.20 REMARK 500 H ILE A 56 HZ3 LYS A 62 1.20 REMARK 500 HE21 GLN B 9 HD22 ASN B 14 1.30 REMARK 500 HE21 GLN A 9 HD22 ASN A 14 1.30 REMARK 500 H VAL A 58 O GLU A 61 1.50 REMARK 500 H VAL B 58 O GLU B 61 1.50 REMARK 500 O MET B 10 H ILE B 13 1.52 REMARK 500 O MET A 10 H ILE A 13 1.52 REMARK 500 O VAL B 58 H GLU B 61 1.52 REMARK 500 O VAL A 58 H GLU A 61 1.53 REMARK 500 O ILE B 79 H LEU B 82 1.54 REMARK 500 O ILE A 79 H LEU A 82 1.54 REMARK 500 O LEU B 6 H GLN B 9 1.59 REMARK 500 O LEU A 6 H GLN A 9 1.59 REMARK 500 O MET A 10 N SER A 12 2.11 REMARK 500 O MET B 10 N SER B 12 2.11 REMARK 500 O LYS B 26 OG SER B 40 2.18 REMARK 500 O LYS A 26 OG SER A 40 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 4 -8.92 -47.39 REMARK 500 1 ASN A 11 -21.88 -27.37 REMARK 500 1 LEU A 20 -2.09 -48.81 REMARK 500 1 LYS A 24 -126.40 -59.01 REMARK 500 1 ASN A 42 41.48 -108.27 REMARK 500 1 ILE A 47 -76.77 -88.41 REMARK 500 1 GLU A 50 -144.33 -56.55 REMARK 500 1 ASN A 59 11.68 47.96 REMARK 500 1 LYS A 62 166.22 -39.19 REMARK 500 1 VAL A 63 -14.76 -159.78 REMARK 500 1 TYR A 64 134.27 177.29 REMARK 500 1 SER A 70 0.14 -53.62 REMARK 500 1 THR A 71 81.65 40.22 REMARK 500 1 ILE A 75 -73.72 -69.48 REMARK 500 1 SER A 76 -32.38 -28.93 REMARK 500 1 ASN A 77 -70.53 -54.70 REMARK 500 1 ASN A 80 -28.33 -31.31 REMARK 500 1 ASN A 83 77.81 27.12 REMARK 500 1 ILE A 84 -173.32 -46.06 REMARK 500 1 GLU A 90 -170.58 -177.28 REMARK 500 1 LYS B 4 -8.95 -47.43 REMARK 500 1 ASN B 11 -21.82 -27.48 REMARK 500 1 LEU B 20 -2.13 -48.80 REMARK 500 1 LYS B 24 -126.40 -59.06 REMARK 500 1 ASN B 42 41.44 -108.24 REMARK 500 1 ILE B 47 -76.80 -88.32 REMARK 500 1 GLU B 50 -144.33 -56.47 REMARK 500 1 ASN B 59 11.61 48.05 REMARK 500 1 LYS B 62 166.14 -39.16 REMARK 500 1 VAL B 63 -14.78 -159.72 REMARK 500 1 TYR B 64 134.32 177.31 REMARK 500 1 SER B 70 0.14 -53.70 REMARK 500 1 THR B 71 81.68 40.26 REMARK 500 1 ILE B 75 -73.66 -69.45 REMARK 500 1 SER B 76 -32.37 -29.02 REMARK 500 1 ASN B 77 -70.52 -54.70 REMARK 500 1 ASN B 80 -28.28 -31.39 REMARK 500 1 ASN B 83 77.85 27.17 REMARK 500 1 ILE B 84 -173.29 -46.13 REMARK 500 1 GLU B 90 -170.58 -177.31 REMARK 500 2 ASN A 11 -20.97 -35.34 REMARK 500 2 ILE A 13 -10.56 -47.90 REMARK 500 2 ASN A 14 -69.02 -91.67 REMARK 500 2 LEU A 20 -2.93 -49.45 REMARK 500 2 LYS A 24 -126.89 15.83 REMARK 500 2 TYR A 45 172.32 -55.33 REMARK 500 2 ILE A 47 -75.97 -89.17 REMARK 500 2 GLU A 50 -84.30 -39.15 REMARK 500 2 ASP A 51 85.97 -154.59 REMARK 500 2 ASN A 59 21.26 48.94 REMARK 500 REMARK 500 THIS ENTRY HAS 1148 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6D53 RELATED DB: PDB REMARK 900 TRANS WT-HLYIIC REMARK 900 RELATED ID: 6D5Z RELATED DB: PDB REMARK 900 CIS WT-HLYIIC REMARK 900 RELATED ID: 30737 RELATED DB: BMRB REMARK 900 DIMERIC FORM OF THE TRANS-STABILIZED HEMOLYSIN II C-TERMINAL DOMAIN DBREF 6WA1 A 1 94 UNP Q81AN8 Q81AN8_BACCR 319 412 DBREF 6WA1 B 1 94 UNP Q81AN8 Q81AN8_BACCR 319 412 SEQADV 6WA1 MET A 87 UNP Q81AN8 PRO 405 ENGINEERED MUTATION SEQADV 6WA1 MET B 87 UNP Q81AN8 PRO 405 ENGINEERED MUTATION SEQRES 1 A 94 ASP ASN GLN LYS ALA LEU GLU GLU GLN MET ASN SER ILE SEQRES 2 A 94 ASN SER VAL ASN ASP LYS LEU ASN LYS GLY LYS GLY LYS SEQRES 3 A 94 LEU SER LEU SER MET ASN GLY ASN GLN LEU LYS ALA THR SEQRES 4 A 94 SER SER ASN ALA GLY TYR GLY ILE SER TYR GLU ASP LYS SEQRES 5 A 94 ASN TRP GLY ILE PHE VAL ASN GLY GLU LYS VAL TYR THR SEQRES 6 A 94 PHE ASN GLU LYS SER THR VAL GLY ASN ILE SER ASN ASP SEQRES 7 A 94 ILE ASN LYS LEU ASN ILE LYS GLY MET TYR ILE GLU ILE SEQRES 8 A 94 LYS GLN ILE SEQRES 1 B 94 ASP ASN GLN LYS ALA LEU GLU GLU GLN MET ASN SER ILE SEQRES 2 B 94 ASN SER VAL ASN ASP LYS LEU ASN LYS GLY LYS GLY LYS SEQRES 3 B 94 LEU SER LEU SER MET ASN GLY ASN GLN LEU LYS ALA THR SEQRES 4 B 94 SER SER ASN ALA GLY TYR GLY ILE SER TYR GLU ASP LYS SEQRES 5 B 94 ASN TRP GLY ILE PHE VAL ASN GLY GLU LYS VAL TYR THR SEQRES 6 B 94 PHE ASN GLU LYS SER THR VAL GLY ASN ILE SER ASN ASP SEQRES 7 B 94 ILE ASN LYS LEU ASN ILE LYS GLY MET TYR ILE GLU ILE SEQRES 8 B 94 LYS GLN ILE HELIX 1 AA1 ASP A 1 GLN A 3 5 3 HELIX 2 AA2 LYS A 4 GLN A 9 1 6 HELIX 3 AA3 MET A 10 LEU A 20 1 11 HELIX 4 AA4 THR A 71 LYS A 81 1 11 HELIX 5 AA5 ASP B 1 GLN B 3 5 3 HELIX 6 AA6 LYS B 4 GLN B 9 1 6 HELIX 7 AA7 MET B 10 LEU B 20 1 11 HELIX 8 AA8 THR B 71 LYS B 81 1 11 SHEET 1 AA1 2 LYS A 26 ASN A 32 0 SHEET 2 AA1 2 GLN A 35 SER A 41 -1 O GLN A 35 N ASN A 32 SHEET 1 AA2 3 GLU A 61 ASN A 67 0 SHEET 2 AA2 3 ASN A 53 VAL A 58 -1 N VAL A 58 O GLU A 61 SHEET 3 AA2 3 GLU B 90 GLN B 93 -1 O LYS B 92 N GLY A 55 SHEET 1 AA3 3 GLU A 90 GLN A 93 0 SHEET 2 AA3 3 ASN B 53 VAL B 58 -1 O GLY B 55 N LYS A 92 SHEET 3 AA3 3 GLU B 61 ASN B 67 -1 O GLU B 61 N VAL B 58 SHEET 1 AA4 2 LYS B 26 ASN B 32 0 SHEET 2 AA4 2 GLN B 35 SER B 41 -1 O GLN B 35 N ASN B 32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1