HEADER VIRAL PROTEIN 24-MAR-20 6WA3 TITLE SOLUTION NMR STRUCTURE OF THE MYRISTOYLATED FELINE IMMUNODEFICIENCY TITLE 2 VIRUS MATRIX PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATRIX PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FELINE IMMUNODEFICIENCY VIRUS; SOURCE 3 ORGANISM_TAXID: 11673; SOURCE 4 GENE: GAG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FIV, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.B.BROWN,H.R.SUMMERS,L.A.BROWN,J.MARCHANT,P.N.CANOVA,C.T.O'HERN, AUTHOR 2 S.ABBOTT,C.NYAUNU,S.MAXWELL,T.JOHNSON,M.MOSER,S.D.ABLAN,H.CARTER, AUTHOR 3 E.O.FREED,M.F.SUMMERS REVDAT 4 14-JUN-23 6WA3 1 REMARK REVDAT 3 17-MAY-23 6WA3 1 COMPND SOURCE REMARK DBREF REVDAT 3 2 1 SEQADV SEQRES HELIX LINK REVDAT 3 3 1 SITE ATOM REVDAT 2 21-DEC-22 6WA3 1 SEQADV REVDAT 1 22-JUL-20 6WA3 0 JRNL AUTH J.B.BROWN,H.R.SUMMERS,L.A.BROWN,J.MARCHANT,P.N.CANOVA, JRNL AUTH 2 C.T.O'HERN,S.T.ABBOTT,C.NYAUNU,S.MAXWELL,T.JOHNSON, JRNL AUTH 3 M.B.MOSER,S.D.ABLAN,H.CARTER,E.O.FREED,M.F.SUMMERS JRNL TITL STRUCTURAL AND MECHANISTIC STUDIES OF THE RARE JRNL TITL 2 MYRISTOYLATION SIGNAL OF THE FELINE IMMUNODEFICIENCY VIRUS. JRNL REF J.MOL.BIOL. V. 432 4076 2020 JRNL REFN ESSN 1089-8638 JRNL PMID 32442659 JRNL DOI 10.1016/J.JMB.2020.05.008 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WA3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247288. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 8; 8 REMARK 210 IONIC STRENGTH : 5; 5 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 50 MM SODIUM PHOSPHATE, 10 MM REMARK 210 DTT, 5 MM SODIUM CHLORIDE, 4 G/L REMARK 210 GLUCOSE, 1 G/L [U-99% 15N] REMARK 210 AMMONIUM CHLORIDE, 300 UM [U-15N] REMARK 210 FELINE IMMUNODEFICIENCY VIRUS REMARK 210 MYRISTOYLATED MATRIX PROTEIN, 90% REMARK 210 H2O/10% D2O; 50 MM SODIUM REMARK 210 PHOSPHATE, 10 MM [U-98% 2H] DTT, REMARK 210 5 MM SODIUM CHLORIDE, 4 G/L [U- REMARK 210 99% 13C] GLUCOSE, 1 G/L AMMONIUM REMARK 210 CHLORIDE, 300 UM [U-13C] FELINE REMARK 210 IMMUNODEFICIENCY VIRUS REMARK 210 MYRISTOYLATED MATRIX PROTEIN, REMARK 210 100% D2O; 50 MM SODIUM PHOSPHATE, REMARK 210 10 MM [U-98% 2H] DTT, 5 MM REMARK 210 SODIUM CHLORIDE, 4 G/L [U-99% REMARK 210 13C] GLUCOSE, 1 G/L AMMONIUM REMARK 210 CHLORIDE, 50 MG/L MYRISTOYL REMARK 210 COENZYME A, 300 UM [U-13C] REMARK 210 FELINE IMMUNODEFICIENCY VIRUS REMARK 210 MYRISTOYLATED MATRIX PROTEIN, REMARK 210 100% D2O; 50 MM SODIUM PHOSPHATE, REMARK 210 10 MM DTT, 5 MM SODIUM CHLORIDE, REMARK 210 4 G/L [U-99% 13C] GLUCOSE, 1 G/ REMARK 210 L [U-99% 15N] AMMONIUM CHLORIDE, REMARK 210 300 UM [U-13C; U-15N] FELINE REMARK 210 IMMUNODEFICIENCY VIRUS REMARK 210 MYRISTOYLATED MATRIX PROTEIN, 90% REMARK 210 H2O/10% D2O; 50 MM SODIUM REMARK 210 PHOSPHATE, 10 MM [U-98% 2H] DTT, REMARK 210 5 MM SODIUM CHLORIDE, 4 G/L REMARK 210 GLUCOSE, 1 G/L AMMONIUM CHLORIDE, REMARK 210 300 UM FELINE IMMUNODEFICIENCY REMARK 210 VIRUS MYRISTOYLATED MATRIX REMARK 210 PROTEIN, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-15N HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D HN(CA)CO; 3D 1H-15N REMARK 210 NOESY; 4D HSQC-NOESY-HMQC; 4D REMARK 210 HMQC-NOESY-HMQC; 2D 1H-13C HMQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, NMRFX, TOPSPIN, REMARK 210 NMRDRAW, NMRPIPE, CYANA REMARK 210 METHOD USED : NA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 120 REMARK 465 HIS A 121 REMARK 465 HIS A 122 REMARK 465 HIS A 123 REMARK 465 HIS A 124 REMARK 465 HIS A 125 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 3 -64.59 -126.19 REMARK 500 1 VAL A 23 97.57 63.93 REMARK 500 1 LYS A 26 100.18 -171.07 REMARK 500 1 SER A 27 -174.89 60.26 REMARK 500 1 PRO A 54 -171.66 -69.79 REMARK 500 1 GLU A 55 43.30 -156.60 REMARK 500 1 GLU A 79 -71.06 -52.91 REMARK 500 1 THR A 99 60.83 -107.71 REMARK 500 1 ARG A 118 160.61 62.99 REMARK 500 2 VAL A 23 88.77 51.66 REMARK 500 2 LYS A 28 97.33 -59.95 REMARK 500 2 GLU A 55 41.36 -145.76 REMARK 500 2 SER A 76 128.69 -178.81 REMARK 500 2 THR A 99 51.05 -105.58 REMARK 500 3 PHE A 30 -177.12 -66.83 REMARK 500 3 PRO A 54 -170.45 -69.79 REMARK 500 3 GLU A 55 28.43 -166.81 REMARK 500 3 SER A 77 133.56 -178.27 REMARK 500 3 THR A 99 94.04 -62.75 REMARK 500 3 VAL A 100 171.49 -52.75 REMARK 500 4 ARG A 48 46.99 -98.21 REMARK 500 4 GLU A 49 160.38 62.77 REMARK 500 4 ILE A 53 73.93 -113.62 REMARK 500 4 GLU A 55 50.96 -118.49 REMARK 500 4 SER A 77 121.67 -172.21 REMARK 500 4 VAL A 100 -173.70 -59.44 REMARK 500 4 ASP A 116 -49.17 -130.86 REMARK 500 4 THR A 117 -179.32 60.40 REMARK 500 5 SER A 27 36.31 -160.77 REMARK 500 5 ILE A 53 74.18 -118.36 REMARK 500 5 GLU A 55 49.49 -157.37 REMARK 500 5 SER A 76 134.40 -174.98 REMARK 500 5 THR A 99 99.10 -57.24 REMARK 500 5 ASP A 116 155.38 64.63 REMARK 500 5 THR A 117 -64.22 -151.99 REMARK 500 5 ARG A 118 160.61 62.88 REMARK 500 6 ARG A 48 46.62 -98.56 REMARK 500 6 GLU A 49 160.41 62.76 REMARK 500 6 SER A 76 141.58 -179.37 REMARK 500 6 THR A 99 100.27 -55.90 REMARK 500 7 GLN A 5 94.23 61.43 REMARK 500 7 LYS A 26 36.20 -97.21 REMARK 500 7 SER A 27 -173.87 -65.36 REMARK 500 7 ILE A 53 74.14 -119.68 REMARK 500 7 SER A 77 128.64 -174.43 REMARK 500 7 SER A 101 -69.06 72.58 REMARK 500 8 THR A 99 56.46 -101.21 REMARK 500 9 ASN A 3 -57.93 -141.19 REMARK 500 9 VAL A 23 151.75 65.09 REMARK 500 9 SER A 27 -169.86 -119.82 REMARK 500 REMARK 500 THIS ENTRY HAS 133 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYR A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30738 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF THE MYRISTOYLATED FELINE IMMUNODEFICIENCY REMARK 900 VIRUS MATRIX PROTEIN DBREF 6WA3 A 2 119 UNP Q66971 Q66971_9RETR 2 119 SEQADV 6WA3 HIS A 120 UNP Q66971 EXPRESSION TAG SEQADV 6WA3 HIS A 121 UNP Q66971 EXPRESSION TAG SEQADV 6WA3 HIS A 122 UNP Q66971 EXPRESSION TAG SEQADV 6WA3 HIS A 123 UNP Q66971 EXPRESSION TAG SEQADV 6WA3 HIS A 124 UNP Q66971 EXPRESSION TAG SEQADV 6WA3 HIS A 125 UNP Q66971 EXPRESSION TAG SEQRES 1 A 124 GLY ASN GLY GLN GLY ARG ASP TRP LYS MET ALA ILE LYS SEQRES 2 A 124 ARG CYS SER ASN VAL ALA VAL GLY VAL GLY GLY LYS SER SEQRES 3 A 124 LYS LYS PHE GLY GLU GLY ASN PHE ARG TRP ALA ILE ARG SEQRES 4 A 124 MET ALA ASN VAL SER THR GLY ARG GLU PRO GLY ASP ILE SEQRES 5 A 124 PRO GLU THR LEU ASP GLN LEU ARG LEU VAL ILE CYS ASP SEQRES 6 A 124 LEU GLN GLU ARG ARG GLU LYS PHE GLY SER SER LYS GLU SEQRES 7 A 124 ILE ASP MET ALA ILE VAL THR LEU LYS VAL PHE ALA VAL SEQRES 8 A 124 ALA GLY LEU LEU ASN MET THR VAL SER THR ALA ALA ALA SEQRES 9 A 124 ALA GLU ASN MET TYR SER GLN MET GLY LEU ASP THR ARG SEQRES 10 A 124 PRO HIS HIS HIS HIS HIS HIS HET MYR A 201 42 HETNAM MYR MYRISTIC ACID FORMUL 2 MYR C14 H28 O2 HELIX 1 AA1 GLY A 6 SER A 17 1 12 HELIX 2 AA2 GLY A 31 THR A 46 1 16 HELIX 3 AA3 THR A 56 GLY A 75 1 20 HELIX 4 AA4 SER A 77 LEU A 96 1 20 HELIX 5 AA5 THR A 102 MET A 113 1 12 LINK N GLY A 2 C1 MYR A 201 1555 1555 1.33 SITE 1 AC1 7 GLY A 2 TRP A 9 ILE A 53 PRO A 54 SITE 2 AC1 7 GLU A 55 LEU A 60 PHE A 90 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1