HEADER VIRAL PROTEIN 25-MAR-20 6WAP TITLE ATOMIC-RESOLUTION STRUCTURE OF HIV-1 CAPSID TUBES BY MAGIC ANGLE TITLE 2 SPINNING NMR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 STRAIN: NL4-3; SOURCE 5 GENE: GAG-POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MAGIC ANGLE SPINNING NMR, HIV-1 CAPSID, CA PROTEIN ASSEMBLIES, HIV- KEYWDS 2 AIDS, VIRAL PROTEIN EXPDTA SOLID-STATE NMR NUMMDL 10 AUTHOR M.LU,R.W.RUSSELL,A.BRYER,C.M.QUINN,G.HOU,H.ZHANG,C.D.SCHWIETERS, AUTHOR 2 J.R.PERILLA,A.M.GRONENBORN,T.POLENOVA REVDAT 4 15-MAY-24 6WAP 1 REMARK REVDAT 3 14-JUN-23 6WAP 1 REMARK REVDAT 2 23-SEP-20 6WAP 1 JRNL REVDAT 1 02-SEP-20 6WAP 0 JRNL AUTH M.LU,R.W.RUSSELL,A.J.BRYER,C.M.QUINN,G.HOU,H.ZHANG, JRNL AUTH 2 C.D.SCHWIETERS,J.R.PERILLA,A.M.GRONENBORN,T.POLENOVA JRNL TITL ATOMIC-RESOLUTION STRUCTURE OF HIV-1 CAPSID TUBES BY JRNL TITL 2 MAGIC-ANGLE SPINNING NMR. JRNL REF NAT.STRUCT.MOL.BIOL. V. 27 863 2020 JRNL REFN ESSN 1545-9985 JRNL PMID 32901160 JRNL DOI 10.1038/S41594-020-0489-2 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WAP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247592. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 277 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 2.4 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 100 % [U-13C; U-15N] HIV-1 REMARK 210 CAPSID PROTEIN, SOLID; 100 % [1, REMARK 210 6-13C]-GLUCOSE,U-15N HIV-1 REMARK 210 CAPSID PROTEIN, SOLID; 100 % [2- REMARK 210 13C]-GLUCOSE,U-15N HIV-1 CAPSID REMARK 210 PROTEIN, SOLID; 100 % 13C,15N- REMARK 210 HIS HIV-1 CAPSID PROTEIN, SOLID; REMARK 210 100 % 13C,15N-TYR HIV-1 CAPSID REMARK 210 PROTEIN, SOLID; 50 % 13C,15N-ALA REMARK 210 HIV-1 CAPSID PROTEIN, 50 % 13C, REMARK 210 15N-ILE HIV-1 CAPSID PROTEIN, REMARK 210 SOLID; 50 % 13C,15N-ALA HIV-1 REMARK 210 CAPSID PROTEIN, 50 % 13C,15N-VAL REMARK 210 HIV-1 CAPSID PROTEIN, SOLID; 86 % REMARK 210 HIV-1 CAPSID PROTEIN, 14 % U- REMARK 210 13C,15N-CA HIV-1 CAPSID PROTEIN, REMARK 210 SOLID; 50 % [U-13C] HIV-1 CAPSID REMARK 210 PROTEIN, 50 % [U-15N] HIV-1 REMARK 210 CAPSID PROTEIN, SOLID REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : EXP1_CORD50MS; EXP2_CORD500MS; REMARK 210 EXP3_DARR50MS; EXP4_NCA; EXP5_ REMARK 210 NCA; EXP6_NCACX; EXP7_NCACX; REMARK 210 EXP8_NCOCX; EXP9_NCOCX3D; EXP10_ REMARK 210 CONCA3D; EXP11_NCACX3D; EXP12_ REMARK 210 NCOCX3D; EXP13_CORD10MS; EXP14_ REMARK 210 CORD20MS; EXP15_CORD50MS; EXP16_ REMARK 210 CORD100MS; EXP17_CORD200MS; REMARK 210 EXP18_CORD300MS; EXP19_CORD400MS; REMARK 210 EXP20_CORD500MS; EXP21_ REMARK 210 CORD500MS; EXP22_NCACX; EXP23_ REMARK 210 CORD25MS; EXP24_CORD500MS; EXP25_ REMARK 210 CORD500MS; EXP26_PAINCP; EXP27_ REMARK 210 CORD25MS; EXP28_R211; EXP29_ REMARK 210 REDOR1MS; EXP30_REDOR1.6MS; REMARK 210 EXP31_REDOR2MS; EXP32_CORD50MS; REMARK 210 EXP33_PDSD1S; EXP34_CORD50MS; REMARK 210 EXP35_CORD500MS; EXP36_NHHC3MS; REMARK 210 EXP37_NHHC5MS REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ; 600 MHZ; 500 MHZ; 900 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III; NHMFL REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; NHMFL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, CCPNMR REMARK 210 ANALYSIS, SPARKY, TALOS, X-PLOR REMARK 210 NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 84 -60.60 -121.04 REMARK 500 1 ALA A 88 -16.84 -146.52 REMARK 500 1 HIS A 120 -70.72 -58.19 REMARK 500 1 PRO A 123 119.84 -38.26 REMARK 500 1 SER A 146 106.59 -43.03 REMARK 500 1 GLN A 176 -93.72 -71.93 REMARK 500 1 ALA A 209 96.62 56.73 REMARK 500 1 HIS A 226 -49.00 -156.30 REMARK 500 1 LYS A 227 -158.85 -173.28 REMARK 500 1 VAL A 230 -33.08 -37.43 REMARK 500 2 HIS A 62 -10.00 -51.32 REMARK 500 2 ALA A 88 -2.64 -154.71 REMARK 500 2 GLN A 176 -163.52 -59.85 REMARK 500 2 ARG A 229 -71.07 69.64 REMARK 500 3 HIS A 62 -12.62 -49.57 REMARK 500 3 HIS A 84 -68.96 -99.14 REMARK 500 3 ALA A 88 123.21 167.72 REMARK 500 3 HIS A 120 -75.66 -63.83 REMARK 500 3 GLU A 175 150.07 -46.91 REMARK 500 3 GLN A 176 -92.63 -81.19 REMARK 500 3 HIS A 226 -58.17 -156.11 REMARK 500 4 HIS A 84 -65.42 -97.22 REMARK 500 4 ALA A 88 107.15 168.76 REMARK 500 4 PRO A 99 80.44 -65.30 REMARK 500 4 SER A 146 104.96 -43.10 REMARK 500 4 GLU A 175 163.42 -44.89 REMARK 500 4 GLN A 176 -94.31 -104.73 REMARK 500 4 ALA A 209 99.29 64.86 REMARK 500 4 LYS A 227 -172.18 55.93 REMARK 500 4 VAL A 230 -31.19 -39.24 REMARK 500 5 HIS A 84 -69.52 -97.21 REMARK 500 5 ALA A 88 123.01 169.86 REMARK 500 5 PRO A 123 116.72 -36.77 REMARK 500 5 GLN A 176 -93.07 -93.70 REMARK 500 5 PRO A 224 104.40 -59.18 REMARK 500 5 ALA A 228 31.37 -178.31 REMARK 500 6 HIS A 62 -17.05 -48.37 REMARK 500 6 ALA A 88 117.06 163.12 REMARK 500 6 GLU A 175 167.73 -49.78 REMARK 500 6 GLN A 176 -93.57 -98.60 REMARK 500 6 PRO A 224 90.79 -59.71 REMARK 500 6 ALA A 228 28.13 -163.11 REMARK 500 7 HIS A 84 -62.56 -102.60 REMARK 500 7 ALA A 88 125.30 -175.62 REMARK 500 7 GLN A 176 -163.45 -60.66 REMARK 500 7 HIS A 226 108.94 -56.50 REMARK 500 7 LYS A 227 143.31 172.80 REMARK 500 8 ILE A 2 108.26 -57.42 REMARK 500 8 HIS A 84 -67.14 -95.14 REMARK 500 8 ALA A 88 4.82 -150.10 REMARK 500 REMARK 500 THIS ENTRY HAS 69 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30741 RELATED DB: BMRB REMARK 900 ATOMIC-RESOLUTION STRUCTURE OF HIV-1 CAPSID TUBES BY MAGIC ANGLE REMARK 900 SPINNING NMR DBREF 6WAP A 1 231 UNP P12493 GAG_HV1N5 133 363 SEQRES 1 A 231 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 A 231 ALA ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 A 231 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 A 231 PHE SER ALA LEU SER GLU GLY ALA THR PRO GLN ASP LEU SEQRES 5 A 231 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 A 231 MET GLN MET LEU LYS GLU THR ILE ASN GLU GLU ALA ALA SEQRES 7 A 231 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 A 231 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 A 231 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 A 231 MET THR HIS ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 A 231 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 A 231 MET TYR SER PRO THR SER ILE LEU ASP ILE ARG GLN GLY SEQRES 13 A 231 PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP ARG PHE TYR SEQRES 14 A 231 LYS THR LEU ARG ALA GLU GLN ALA SER GLN GLU VAL LYS SEQRES 15 A 231 ASN TRP MET THR GLU THR LEU LEU VAL GLN ASN ALA ASN SEQRES 16 A 231 PRO ASP CYS LYS THR ILE LEU LYS ALA LEU GLY PRO GLY SEQRES 17 A 231 ALA THR LEU GLU GLU MET MET THR ALA CYS GLN GLY VAL SEQRES 18 A 231 GLY GLY PRO GLY HIS LYS ALA ARG VAL LEU HELIX 1 AA1 SER A 16 ALA A 31 1 16 HELIX 2 AA2 GLU A 35 SER A 44 1 10 HELIX 3 AA3 THR A 48 VAL A 59 1 12 HELIX 4 AA4 HIS A 62 HIS A 84 1 23 HELIX 5 AA5 PRO A 85 ALA A 88 5 4 HELIX 6 AA6 ARG A 100 ALA A 105 1 6 HELIX 7 AA7 THR A 110 HIS A 120 1 11 HELIX 8 AA8 PRO A 125 SER A 146 1 22 HELIX 9 AA9 SER A 149 ILE A 153 5 5 HELIX 10 AB1 PRO A 160 GLU A 175 1 16 HELIX 11 AB2 SER A 178 ASN A 193 1 16 HELIX 12 AB3 ASN A 195 GLY A 206 1 12 HELIX 13 AB4 THR A 210 VAL A 221 1 12 SHEET 1 AA1 2 VAL A 3 GLN A 4 0 SHEET 2 AA1 2 MET A 10 VAL A 11 -1 O VAL A 11 N VAL A 3 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1