HEADER GENE REGULATION 26-MAR-20 6WAU TITLE COMPLEX STRUCTURE OF PHF19 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHD FINGER PROTEIN 19; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: POLYCOMB-LIKE PROTEIN 3,HPCL3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE H3.1T PEPTIDE; COMPND 8 CHAIN: G, H, I, J, K, L; COMPND 9 SYNONYM: H3T,H3/G; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PHF19, PCL3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: -V3R; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28-MHL; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606 KEYWDS PHF19, TUDOR, HISTONE VARIANT, COMPLEX, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR C.DONG,C.BOUNTRA,A.M.EDWARDS,C.H.ARROWSMITH,J.R.MIN,STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (SGC) REVDAT 4 18-OCT-23 6WAU 1 REMARK REVDAT 3 30-JUN-21 6WAU 1 REMARK REVDAT 2 16-SEP-20 6WAU 1 JRNL REVDAT 1 26-AUG-20 6WAU 0 JRNL AUTH C.DONG,R.NAKAGAWA,K.OYAMA,Y.YAMAMOTO,W.ZHANG,A.DONG,Y.LI, JRNL AUTH 2 Y.YOSHIMURA,H.KAMIYA,J.I.NAKAYAMA,J.UEDA,J.MIN JRNL TITL STRUCTURAL BASIS FOR HISTONE VARIANT H3TK27ME3 RECOGNITION JRNL TITL 2 BY PHF1 AND PHF19. JRNL REF ELIFE V. 9 2020 JRNL REFN ESSN 2050-084X JRNL PMID 32869745 JRNL DOI 10.7554/ELIFE.58675 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 48195 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.652 REMARK 3 FREE R VALUE TEST SET COUNT : 2242 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3430 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.5890 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.4480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3031 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 36 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.30800 REMARK 3 B22 (A**2) : 3.30800 REMARK 3 B33 (A**2) : -6.61500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.024 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.024 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.728 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3110 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2859 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4222 ; 1.994 ; 1.632 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6568 ; 1.289 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 379 ; 8.526 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 142 ;30.667 ;21.408 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 494 ;15.721 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.128 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 389 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3413 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 702 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 504 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 138 ; 0.202 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1347 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 81 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1528 ; 3.216 ; 2.859 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1527 ; 3.216 ; 2.858 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1895 ; 4.131 ; 4.275 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1896 ; 4.130 ; 4.276 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1582 ; 3.384 ; 3.023 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1583 ; 3.383 ; 3.024 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2325 ; 4.463 ; 4.464 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2325 ; 4.463 ; 4.464 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.5033 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H,-K,L REMARK 3 TWIN FRACTION : 0.4967 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 6WAU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247798. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97951 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51838 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 55.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 1.31400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4HCZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.3M AMMONIUM PHOSPHATE DIBASIC AND REMARK 280 0.1M TRIS PH 8.5, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.93933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 11.46967 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 37 REMARK 465 GLU A 95 REMARK 465 GLU A 96 REMARK 465 GLY B 37 REMARK 465 SER B 38 REMARK 465 GLU B 95 REMARK 465 GLU B 96 REMARK 465 GLY C 37 REMARK 465 GLY C 94 REMARK 465 GLU C 95 REMARK 465 GLU C 96 REMARK 465 GLY D 37 REMARK 465 SER D 38 REMARK 465 GLY D 94 REMARK 465 GLU D 95 REMARK 465 GLU D 96 REMARK 465 GLY E 37 REMARK 465 SER E 38 REMARK 465 LYS E 39 REMARK 465 LEU E 40 REMARK 465 THR E 41 REMARK 465 GLY E 94 REMARK 465 GLU E 95 REMARK 465 GLU E 96 REMARK 465 GLY F 37 REMARK 465 SER F 38 REMARK 465 GLY F 94 REMARK 465 GLU F 95 REMARK 465 GLU F 96 REMARK 465 PRO G 30 REMARK 465 ALA G 31 REMARK 465 THR G 32 REMARK 465 PRO H 30 REMARK 465 ALA H 31 REMARK 465 THR H 32 REMARK 465 ALA I 31 REMARK 465 THR I 32 REMARK 465 ALA J 31 REMARK 465 THR J 32 REMARK 465 PRO K 30 REMARK 465 ALA K 31 REMARK 465 THR K 32 REMARK 465 ALA L 29 REMARK 465 PRO L 30 REMARK 465 ALA L 31 REMARK 465 THR L 32 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 38 N CB OG REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 LYS A 61 CD CE NZ REMARK 470 LYS B 39 CG CD CE NZ REMARK 470 LYS B 79 CE NZ REMARK 470 SER C 38 N CB OG REMARK 470 LYS C 39 CG CD CE NZ REMARK 470 ARG C 49 NH1 NH2 REMARK 470 LYS C 61 CD CE NZ REMARK 470 SER C 66 OG REMARK 470 LYS C 79 CE NZ REMARK 470 LYS C 85 NZ REMARK 470 LYS D 39 CG CD CE NZ REMARK 470 LYS D 61 CD CE NZ REMARK 470 SER D 65 OG REMARK 470 LYS D 79 CE NZ REMARK 470 LYS E 59 NZ REMARK 470 LYS E 61 CE NZ REMARK 470 SER E 66 OG REMARK 470 LYS E 79 CD CE NZ REMARK 470 VAL E 92 CG1 CG2 REMARK 470 PRO E 93 C O CB CG CD REMARK 470 LYS F 39 CG CD CE NZ REMARK 470 LYS F 61 CD CE NZ REMARK 470 LYS F 79 NZ REMARK 470 PRO F 93 C O CB CG CD REMARK 470 LYS G 23 NZ REMARK 470 LYS H 23 CE NZ REMARK 470 THR I 22 OG1 CG2 REMARK 470 LYS I 23 CE NZ REMARK 470 SER I 28 OG REMARK 470 PRO I 30 C O CB CG REMARK 470 LYS J 23 CE NZ REMARK 470 SER J 28 OG REMARK 470 PRO J 30 CA C O CB CG CD REMARK 470 THR K 22 OG1 CG2 REMARK 470 LYS K 23 NZ REMARK 470 SER K 28 OG REMARK 470 ALA K 29 C O CB REMARK 470 LYS L 23 CE NZ REMARK 470 SER L 28 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 75 CD GLU C 75 OE1 0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN D 68 53.78 29.53 REMARK 500 ASN D 77 7.73 82.86 REMARK 500 GLN E 68 46.30 33.46 REMARK 500 GLN F 68 47.29 36.90 REMARK 500 M3L I 27 85.32 -68.83 REMARK 500 SER I 28 105.67 -56.73 REMARK 500 M3L J 27 109.75 -56.38 REMARK 500 REMARK 500 REMARK: NULL DBREF 6WAU A 38 96 UNP Q5T6S3 PHF19_HUMAN 38 96 DBREF 6WAU B 38 96 UNP Q5T6S3 PHF19_HUMAN 38 96 DBREF 6WAU C 38 96 UNP Q5T6S3 PHF19_HUMAN 38 96 DBREF 6WAU D 38 96 UNP Q5T6S3 PHF19_HUMAN 38 96 DBREF 6WAU E 38 96 UNP Q5T6S3 PHF19_HUMAN 38 96 DBREF 6WAU F 38 96 UNP Q5T6S3 PHF19_HUMAN 38 96 DBREF 6WAU G 21 32 UNP Q16695 H31T_HUMAN 22 33 DBREF 6WAU H 21 32 UNP Q16695 H31T_HUMAN 22 33 DBREF 6WAU I 21 32 UNP Q16695 H31T_HUMAN 22 33 DBREF 6WAU J 21 32 UNP Q16695 H31T_HUMAN 22 33 DBREF 6WAU K 21 32 UNP Q16695 H31T_HUMAN 22 33 DBREF 6WAU L 21 32 UNP Q16695 H31T_HUMAN 22 33 SEQADV 6WAU GLY A 37 UNP Q5T6S3 EXPRESSION TAG SEQADV 6WAU GLY B 37 UNP Q5T6S3 EXPRESSION TAG SEQADV 6WAU GLY C 37 UNP Q5T6S3 EXPRESSION TAG SEQADV 6WAU GLY D 37 UNP Q5T6S3 EXPRESSION TAG SEQADV 6WAU GLY E 37 UNP Q5T6S3 EXPRESSION TAG SEQADV 6WAU GLY F 37 UNP Q5T6S3 EXPRESSION TAG SEQRES 1 A 60 GLY SER LYS LEU THR GLU GLY GLN TYR VAL LEU CYS ARG SEQRES 2 A 60 TRP THR ASP GLY LEU TYR TYR LEU GLY LYS ILE LYS ARG SEQRES 3 A 60 VAL SER SER SER LYS GLN SER CYS LEU VAL THR PHE GLU SEQRES 4 A 60 ASP ASN SER LYS TYR TRP VAL LEU TRP LYS ASP ILE GLN SEQRES 5 A 60 HIS ALA GLY VAL PRO GLY GLU GLU SEQRES 1 B 60 GLY SER LYS LEU THR GLU GLY GLN TYR VAL LEU CYS ARG SEQRES 2 B 60 TRP THR ASP GLY LEU TYR TYR LEU GLY LYS ILE LYS ARG SEQRES 3 B 60 VAL SER SER SER LYS GLN SER CYS LEU VAL THR PHE GLU SEQRES 4 B 60 ASP ASN SER LYS TYR TRP VAL LEU TRP LYS ASP ILE GLN SEQRES 5 B 60 HIS ALA GLY VAL PRO GLY GLU GLU SEQRES 1 C 60 GLY SER LYS LEU THR GLU GLY GLN TYR VAL LEU CYS ARG SEQRES 2 C 60 TRP THR ASP GLY LEU TYR TYR LEU GLY LYS ILE LYS ARG SEQRES 3 C 60 VAL SER SER SER LYS GLN SER CYS LEU VAL THR PHE GLU SEQRES 4 C 60 ASP ASN SER LYS TYR TRP VAL LEU TRP LYS ASP ILE GLN SEQRES 5 C 60 HIS ALA GLY VAL PRO GLY GLU GLU SEQRES 1 D 60 GLY SER LYS LEU THR GLU GLY GLN TYR VAL LEU CYS ARG SEQRES 2 D 60 TRP THR ASP GLY LEU TYR TYR LEU GLY LYS ILE LYS ARG SEQRES 3 D 60 VAL SER SER SER LYS GLN SER CYS LEU VAL THR PHE GLU SEQRES 4 D 60 ASP ASN SER LYS TYR TRP VAL LEU TRP LYS ASP ILE GLN SEQRES 5 D 60 HIS ALA GLY VAL PRO GLY GLU GLU SEQRES 1 E 60 GLY SER LYS LEU THR GLU GLY GLN TYR VAL LEU CYS ARG SEQRES 2 E 60 TRP THR ASP GLY LEU TYR TYR LEU GLY LYS ILE LYS ARG SEQRES 3 E 60 VAL SER SER SER LYS GLN SER CYS LEU VAL THR PHE GLU SEQRES 4 E 60 ASP ASN SER LYS TYR TRP VAL LEU TRP LYS ASP ILE GLN SEQRES 5 E 60 HIS ALA GLY VAL PRO GLY GLU GLU SEQRES 1 F 60 GLY SER LYS LEU THR GLU GLY GLN TYR VAL LEU CYS ARG SEQRES 2 F 60 TRP THR ASP GLY LEU TYR TYR LEU GLY LYS ILE LYS ARG SEQRES 3 F 60 VAL SER SER SER LYS GLN SER CYS LEU VAL THR PHE GLU SEQRES 4 F 60 ASP ASN SER LYS TYR TRP VAL LEU TRP LYS ASP ILE GLN SEQRES 5 F 60 HIS ALA GLY VAL PRO GLY GLU GLU SEQRES 1 G 12 ALA THR LYS VAL ALA ARG M3L SER ALA PRO ALA THR SEQRES 1 H 12 ALA THR LYS VAL ALA ARG M3L SER ALA PRO ALA THR SEQRES 1 I 12 ALA THR LYS VAL ALA ARG M3L SER ALA PRO ALA THR SEQRES 1 J 12 ALA THR LYS VAL ALA ARG M3L SER ALA PRO ALA THR SEQRES 1 K 12 ALA THR LYS VAL ALA ARG M3L SER ALA PRO ALA THR SEQRES 1 L 12 ALA THR LYS VAL ALA ARG M3L SER ALA PRO ALA THR MODRES 6WAU M3L G 27 LYS MODIFIED RESIDUE MODRES 6WAU M3L H 27 LYS MODIFIED RESIDUE MODRES 6WAU M3L I 27 LYS MODIFIED RESIDUE MODRES 6WAU M3L J 27 LYS MODIFIED RESIDUE MODRES 6WAU M3L K 27 LYS MODIFIED RESIDUE MODRES 6WAU M3L L 27 LYS MODIFIED RESIDUE HET M3L G 27 12 HET M3L H 27 12 HET M3L I 27 12 HET M3L J 27 12 HET M3L K 27 12 HET M3L L 27 12 HET UNX A 101 1 HET UNX B 101 1 HET UNX B 102 1 HET UNX B 103 1 HET UNX B 104 1 HET UNX C 101 1 HET UNX C 102 1 HET UNX D 101 1 HET UNX D 102 1 HET UNX D 103 1 HET UNX D 104 1 HETNAM M3L N-TRIMETHYLLYSINE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 7 M3L 6(C9 H21 N2 O2 1+) FORMUL 13 UNX 11(X) FORMUL 24 HOH *36(H2 O) SHEET 1 AA1 5 LYS A 79 LEU A 83 0 SHEET 2 AA1 5 SER A 69 THR A 73 -1 N CYS A 70 O VAL A 82 SHEET 3 AA1 5 TYR A 55 SER A 64 -1 N LYS A 61 O LEU A 71 SHEET 4 AA1 5 TYR A 45 ARG A 49 -1 N VAL A 46 O GLY A 58 SHEET 5 AA1 5 ILE A 87 HIS A 89 -1 O GLN A 88 N LEU A 47 SHEET 1 AA2 5 LYS B 79 LEU B 83 0 SHEET 2 AA2 5 SER B 69 THR B 73 -1 N CYS B 70 O VAL B 82 SHEET 3 AA2 5 TYR B 55 SER B 64 -1 N LYS B 61 O LEU B 71 SHEET 4 AA2 5 TYR B 45 ARG B 49 -1 N CYS B 48 O TYR B 56 SHEET 5 AA2 5 ILE B 87 HIS B 89 -1 O GLN B 88 N LEU B 47 SHEET 1 AA3 5 LYS C 79 LEU C 83 0 SHEET 2 AA3 5 SER C 69 THR C 73 -1 N CYS C 70 O VAL C 82 SHEET 3 AA3 5 TYR C 55 SER C 64 -1 N LYS C 61 O LEU C 71 SHEET 4 AA3 5 TYR C 45 ARG C 49 -1 N VAL C 46 O GLY C 58 SHEET 5 AA3 5 ILE C 87 HIS C 89 -1 O GLN C 88 N LEU C 47 SHEET 1 AA4 5 LYS D 79 LEU D 83 0 SHEET 2 AA4 5 SER D 69 THR D 73 -1 N CYS D 70 O VAL D 82 SHEET 3 AA4 5 TYR D 55 SER D 64 -1 N LYS D 61 O LEU D 71 SHEET 4 AA4 5 TYR D 45 ARG D 49 -1 N VAL D 46 O GLY D 58 SHEET 5 AA4 5 ILE D 87 HIS D 89 -1 O GLN D 88 N LEU D 47 SHEET 1 AA5 5 LYS E 79 LEU E 83 0 SHEET 2 AA5 5 SER E 69 PHE E 74 -1 N CYS E 70 O VAL E 82 SHEET 3 AA5 5 TYR E 55 SER E 64 -1 N LYS E 61 O LEU E 71 SHEET 4 AA5 5 TYR E 45 ARG E 49 -1 N VAL E 46 O GLY E 58 SHEET 5 AA5 5 ILE E 87 HIS E 89 -1 O GLN E 88 N LEU E 47 SHEET 1 AA6 5 LYS F 79 LEU F 83 0 SHEET 2 AA6 5 SER F 69 PHE F 74 -1 N CYS F 70 O VAL F 82 SHEET 3 AA6 5 TYR F 55 SER F 64 -1 N LYS F 61 O LEU F 71 SHEET 4 AA6 5 TYR F 45 ARG F 49 -1 N VAL F 46 O GLY F 58 SHEET 5 AA6 5 ILE F 87 HIS F 89 -1 O GLN F 88 N LEU F 47 LINK C ARG G 26 N M3L G 27 1555 1555 1.34 LINK C M3L G 27 N SER G 28 1555 1555 1.35 LINK C ARG H 26 N M3L H 27 1555 1555 1.33 LINK C M3L H 27 N SER H 28 1555 1555 1.31 LINK C ARG I 26 N M3L I 27 1555 1555 1.34 LINK C M3L I 27 N SER I 28 1555 1555 1.35 LINK C ARG J 26 N M3L J 27 1555 1555 1.33 LINK C M3L J 27 N SER J 28 1555 1555 1.34 LINK C ARG K 26 N M3L K 27 1555 1555 1.34 LINK C M3L K 27 N SER K 28 1555 1555 1.34 LINK C ARG L 26 N M3L L 27 1555 1555 1.33 LINK C M3L L 27 N SER L 28 1555 1555 1.34 CRYST1 111.477 111.477 34.409 90.00 90.00 120.00 P 32 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008970 0.005179 0.000000 0.00000 SCALE2 0.000000 0.010358 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029062 0.00000