HEADER SIGNALING PROTEIN 26-MAR-20 6WBH TITLE CRYSTAL STRUCTURE OF MRECK(CC4) IN FUSION WITH ENGINEERED MBP AT TITLE 2 MEDIUM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTODEXTRIN-BINDING PROTEIN,REVERSION-INDUCING CYSTEINE- COMPND 3 RICH PROTEIN WITH KAZAL MOTIFS FUSION; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: MRECK; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI, MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 562, 10090; SOURCE 5 GENE: MALE, DJ492_13065, EPS91_05465, FV295_14110, NCTC8450_00456, SOURCE 6 RECK; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SHUFFLE (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET11D KEYWDS WNT SIGNALING, 4-HELIX BUNDLE, EXTRACELLULAR DOMAIN, VASCULARIZATION, KEYWDS 2 BLOOD-BRAIN BARRIER, MALTOSE-BINDING PROTEIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.H.CHANG,F.L.HSIEH,S.B.GABELLI,J.NATHANS REVDAT 5 18-OCT-23 6WBH 1 HETSYN REVDAT 4 29-JUL-20 6WBH 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 FORMUL LINK SITE ATOM REVDAT 3 15-JUL-20 6WBH 1 JRNL REVDAT 2 01-JUL-20 6WBH 1 JRNL REVDAT 1 17-JUN-20 6WBH 0 JRNL AUTH T.H.CHANG,F.L.HSIEH,P.M.SMALLWOOD,S.B.GABELLI,J.NATHANS JRNL TITL STRUCTURE OF THE RECK CC DOMAIN, AN EVOLUTIONARY ANOMALY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 15104 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32541044 JRNL DOI 10.1073/PNAS.2006332117 REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 19015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5300 - 4.6938 1.00 2793 140 0.1896 0.2010 REMARK 3 2 4.6938 - 3.7262 0.99 2652 137 0.1737 0.1970 REMARK 3 3 3.7262 - 3.2553 0.99 2610 137 0.1779 0.2135 REMARK 3 4 3.2553 - 2.9577 0.98 2545 143 0.1938 0.2268 REMARK 3 5 2.9577 - 2.7458 0.97 2523 118 0.2236 0.2310 REMARK 3 6 2.7458 - 2.5839 0.97 2537 106 0.2110 0.2322 REMARK 3 7 2.5800 - 2.4550 0.94 2423 151 0.2383 0.2805 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9567 40.9864 -19.4219 REMARK 3 T TENSOR REMARK 3 T11: 0.1636 T22: 0.1622 REMARK 3 T33: 0.1518 T12: 0.0341 REMARK 3 T13: -0.0099 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 0.8169 L22: 1.1400 REMARK 3 L33: 0.7732 L12: -0.0267 REMARK 3 L13: -0.3658 L23: 0.1799 REMARK 3 S TENSOR REMARK 3 S11: 0.0652 S12: 0.0135 S13: 0.1444 REMARK 3 S21: -0.2563 S22: -0.0817 S23: 0.1685 REMARK 3 S31: -0.1914 S32: -0.2055 S33: 0.0098 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6347 27.3499 -11.6821 REMARK 3 T TENSOR REMARK 3 T11: 0.1186 T22: 0.1061 REMARK 3 T33: 0.0862 T12: 0.0465 REMARK 3 T13: 0.0060 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.4720 L22: 0.7862 REMARK 3 L33: 0.4022 L12: 0.0130 REMARK 3 L13: 0.1369 L23: 0.0084 REMARK 3 S TENSOR REMARK 3 S11: 0.0301 S12: -0.0909 S13: -0.0345 REMARK 3 S21: 0.0498 S22: -0.0308 S23: -0.1650 REMARK 3 S31: 0.0240 S32: 0.2404 S33: -0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.0716 13.8971 -10.6793 REMARK 3 T TENSOR REMARK 3 T11: 0.1139 T22: 0.0951 REMARK 3 T33: 0.1238 T12: -0.0005 REMARK 3 T13: 0.0024 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.8204 L22: 0.8853 REMARK 3 L33: 1.1039 L12: -0.1682 REMARK 3 L13: -0.1246 L23: 0.2847 REMARK 3 S TENSOR REMARK 3 S11: 0.0642 S12: -0.0054 S13: -0.1033 REMARK 3 S21: -0.0270 S22: -0.0931 S23: 0.0369 REMARK 3 S31: 0.0104 S32: -0.0892 S33: 0.0445 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 248 THROUGH 354 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6641 28.6799 -12.5622 REMARK 3 T TENSOR REMARK 3 T11: 0.1222 T22: 0.1183 REMARK 3 T33: 0.1022 T12: 0.0246 REMARK 3 T13: -0.0012 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 0.6062 L22: 0.6233 REMARK 3 L33: 0.2494 L12: 0.0449 REMARK 3 L13: -0.1253 L23: 0.0984 REMARK 3 S TENSOR REMARK 3 S11: 0.0298 S12: 0.0233 S13: -0.0332 REMARK 3 S21: -0.1334 S22: 0.0123 S23: -0.0147 REMARK 3 S31: -0.0161 S32: 0.0042 S33: -0.0216 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 355 THROUGH 389 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9162 23.3378 -35.6988 REMARK 3 T TENSOR REMARK 3 T11: 0.2961 T22: 0.2661 REMARK 3 T33: 0.1893 T12: 0.0240 REMARK 3 T13: -0.0536 T23: -0.0723 REMARK 3 L TENSOR REMARK 3 L11: 1.3349 L22: 3.5748 REMARK 3 L33: 0.2252 L12: 2.1842 REMARK 3 L13: -0.5586 L23: -0.9172 REMARK 3 S TENSOR REMARK 3 S11: -0.2047 S12: 0.1316 S13: 0.0612 REMARK 3 S21: -0.7043 S22: 0.2138 S23: 0.2065 REMARK 3 S31: 0.2290 S32: 0.0345 S33: -0.1778 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 390 THROUGH 434 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2285 40.3538 -48.0195 REMARK 3 T TENSOR REMARK 3 T11: 0.2082 T22: 0.2513 REMARK 3 T33: 0.1641 T12: 0.0005 REMARK 3 T13: -0.0018 T23: -0.0479 REMARK 3 L TENSOR REMARK 3 L11: 1.6997 L22: 1.1807 REMARK 3 L33: 1.4849 L12: -0.1674 REMARK 3 L13: -0.0546 L23: -0.0127 REMARK 3 S TENSOR REMARK 3 S11: 0.1427 S12: -0.2425 S13: 0.0412 REMARK 3 S21: 0.1186 S22: -0.0883 S23: 0.1178 REMARK 3 S31: -0.1489 S32: 0.0592 S33: -0.0138 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WBH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247962. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5419 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19054 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 45.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.19000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.51100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.1 REMARK 200 STARTING MODEL: 3SET REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 ACETATE, PH 4.6, 25% PEG 4000, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 40.11100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.29950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.11100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.29950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 SER A 435 REMARK 465 GLN A 436 REMARK 465 SER A 437 REMARK 465 GLY A 438 REMARK 465 THR A 439 REMARK 465 HIS A 440 REMARK 465 HIS A 441 REMARK 465 HIS A 442 REMARK 465 HIS A 443 REMARK 465 HIS A 444 REMARK 465 HIS A 445 REMARK 465 HIS A 446 REMARK 465 HIS A 447 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 140 HZ3 LYS A 144 1.37 REMARK 500 OE1 GLU A 140 NZ LYS A 144 1.95 REMARK 500 O HOH A 651 O HOH A 693 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 290 HZ3 LYS A 418 1556 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 46 CD GLU A 46 OE1 -0.073 REMARK 500 GLU A 46 CD GLU A 46 OE2 -0.066 REMARK 500 HIS A 66 CG HIS A 66 ND1 -0.093 REMARK 500 HIS A 66 CE1 HIS A 66 NE2 -0.103 REMARK 500 GLU A 113 CD GLU A 113 OE1 -0.103 REMARK 500 GLU A 113 CD GLU A 113 OE2 -0.104 REMARK 500 GLU A 155 CD GLU A 155 OE1 -0.111 REMARK 500 GLU A 155 CD GLU A 155 OE2 -0.140 REMARK 500 GLU A 216 CD GLU A 216 OE1 -0.071 REMARK 500 GLU A 216 CD GLU A 216 OE2 -0.070 REMARK 500 HIS A 221 CE1 HIS A 221 NE2 -0.087 REMARK 500 HIS A 221 NE2 HIS A 221 CD2 -0.070 REMARK 500 GLU A 293 CD GLU A 293 OE1 -0.075 REMARK 500 GLU A 293 CD GLU A 293 OE2 -0.106 REMARK 500 ASP A 298 CG ASP A 298 OD2 -0.151 REMARK 500 GLU A 310 CD GLU A 310 OE1 -0.092 REMARK 500 GLU A 310 CD GLU A 310 OE2 -0.123 REMARK 500 MET A 332 C PRO A 333 N 0.159 REMARK 500 PRO A 336 N PRO A 336 CA 0.210 REMARK 500 ASN A 376 C PRO A 377 N 0.174 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 332 O - C - N ANGL. DEV. = -12.4 DEGREES REMARK 500 PRO A 336 C - N - CA ANGL. DEV. = 15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 170 -74.38 -88.07 REMARK 500 ASP A 211 -168.65 -128.96 REMARK 500 TYR A 285 -51.26 -128.60 REMARK 500 LEU A 287 49.69 -82.71 REMARK 500 ASP A 298 -86.81 -67.20 REMARK 500 ASP A 298 -86.10 -67.20 REMARK 500 SER A 402 57.81 -93.77 REMARK 500 CYS A 417 29.84 -145.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 298 12.83 REMARK 500 ASP A 298 12.42 REMARK 500 LYS A 299 -11.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 217 NE2 REMARK 620 2 GLU A 223 OE2 113.7 REMARK 620 3 GLU A 311 OE1 41.5 72.2 REMARK 620 4 GLU A 311 OE2 41.3 72.6 2.8 REMARK 620 5 HOH A 744 O 106.9 103.5 118.9 121.7 REMARK 620 N 1 2 3 4 DBREF1 6WBH A 5 368 UNP A0A376KDN7_ECOLX DBREF2 6WBH A A0A376KDN7 29 392 DBREF 6WBH A 373 437 UNP Q9Z0J1 RECK_MOUSE 206 270 SEQADV 6WBH MET A 1 UNP A0A376KDN INITIATING METHIONINE SEQADV 6WBH ALA A 2 UNP A0A376KDN EXPRESSION TAG SEQADV 6WBH LYS A 3 UNP A0A376KDN EXPRESSION TAG SEQADV 6WBH THR A 4 UNP A0A376KDN EXPRESSION TAG SEQADV 6WBH ALA A 84 UNP A0A376KDN ASP 108 ENGINEERED MUTATION SEQADV 6WBH ALA A 85 UNP A0A376KDN LYS 109 ENGINEERED MUTATION SEQADV 6WBH ALA A 174 UNP A0A376KDN GLU 198 ENGINEERED MUTATION SEQADV 6WBH ALA A 175 UNP A0A376KDN ASN 199 ENGINEERED MUTATION SEQADV 6WBH HIS A 217 UNP A0A376KDN ALA 241 ENGINEERED MUTATION SEQADV 6WBH HIS A 221 UNP A0A376KDN LYS 245 ENGINEERED MUTATION SEQADV 6WBH ALA A 241 UNP A0A376KDN LYS 265 ENGINEERED MUTATION SEQADV 6WBH VAL A 314 UNP A0A376KDN ALA 338 ENGINEERED MUTATION SEQADV 6WBH VAL A 319 UNP A0A376KDN ILE 343 ENGINEERED MUTATION SEQADV 6WBH ALA A 364 UNP A0A376KDN LYS 388 ENGINEERED MUTATION SEQADV 6WBH ALA A 365 UNP A0A376KDN ASP 389 ENGINEERED MUTATION SEQADV 6WBH ASN A 369 UNP A0A376KDN LINKER SEQADV 6WBH ALA A 370 UNP A0A376KDN LINKER SEQADV 6WBH ALA A 371 UNP A0A376KDN LINKER SEQADV 6WBH ALA A 372 UNP A0A376KDN LINKER SEQADV 6WBH GLY A 438 UNP Q9Z0J1 EXPRESSION TAG SEQADV 6WBH THR A 439 UNP Q9Z0J1 EXPRESSION TAG SEQADV 6WBH HIS A 440 UNP Q9Z0J1 EXPRESSION TAG SEQADV 6WBH HIS A 441 UNP Q9Z0J1 EXPRESSION TAG SEQADV 6WBH HIS A 442 UNP Q9Z0J1 EXPRESSION TAG SEQADV 6WBH HIS A 443 UNP Q9Z0J1 EXPRESSION TAG SEQADV 6WBH HIS A 444 UNP Q9Z0J1 EXPRESSION TAG SEQADV 6WBH HIS A 445 UNP Q9Z0J1 EXPRESSION TAG SEQADV 6WBH HIS A 446 UNP Q9Z0J1 EXPRESSION TAG SEQADV 6WBH HIS A 447 UNP Q9Z0J1 EXPRESSION TAG SEQRES 1 A 447 MET ALA LYS THR GLU GLU GLY LYS LEU VAL ILE TRP ILE SEQRES 2 A 447 ASN GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY SEQRES 3 A 447 LYS LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL SEQRES 4 A 447 GLU HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL SEQRES 5 A 447 ALA ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA SEQRES 6 A 447 HIS ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU SEQRES 7 A 447 ALA GLU ILE THR PRO ALA ALA ALA PHE GLN ASP LYS LEU SEQRES 8 A 447 TYR PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS SEQRES 9 A 447 LEU ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU SEQRES 10 A 447 ILE TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR SEQRES 11 A 447 TRP GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA SEQRES 12 A 447 LYS GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO SEQRES 13 A 447 TYR PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR SEQRES 14 A 447 ALA PHE LYS TYR ALA ALA GLY LYS TYR ASP ILE LYS ASP SEQRES 15 A 447 VAL GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR SEQRES 16 A 447 PHE LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA SEQRES 17 A 447 ASP THR ASP TYR SER ILE ALA GLU HIS ALA PHE ASN HIS SEQRES 18 A 447 GLY GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SEQRES 19 A 447 SER ASN ILE ASP THR SER ALA VAL ASN TYR GLY VAL THR SEQRES 20 A 447 VAL LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE SEQRES 21 A 447 VAL GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO SEQRES 22 A 447 ASN LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU SEQRES 23 A 447 LEU THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS SEQRES 24 A 447 PRO LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU SEQRES 25 A 447 LEU VAL LYS ASP PRO ARG VAL ALA ALA THR MET GLU ASN SEQRES 26 A 447 ALA GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SEQRES 27 A 447 SER ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN SEQRES 28 A 447 ALA ALA SER GLY ARG GLN THR VAL ASP ALA ALA LEU ALA SEQRES 29 A 447 ALA ALA GLN THR ASN ALA ALA ALA PRO MET ARG ASN PRO SEQRES 30 A 447 THR ASP SER LEU TYR CYS CYS ASP ARG ALA GLU ASP HIS SEQRES 31 A 447 ALA CYS GLN ASN ALA CYS LYS ARG ILE LEU MET SER LYS SEQRES 32 A 447 LYS THR GLU MET GLU ILE VAL ASP GLY LEU ILE GLU GLY SEQRES 33 A 447 CYS LYS THR GLN PRO LEU PRO GLN ASP PRO LEU TRP GLN SEQRES 34 A 447 CYS PHE LEU GLU SER SER GLN SER GLY THR HIS HIS HIS SEQRES 35 A 447 HIS HIS HIS HIS HIS HET GLC B 1 22 HET GLC B 2 22 HET CL A 502 1 HET ZN A 503 1 HET ZN A 504 1 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETNAM ZN ZINC ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 GLC 2(C6 H12 O6) FORMUL 3 CL CL 1- FORMUL 4 ZN 2(ZN 2+) FORMUL 6 HOH *218(H2 O) HELIX 1 AA1 GLY A 18 GLY A 34 1 17 HELIX 2 AA2 LYS A 44 ALA A 54 1 11 HELIX 3 AA3 ARG A 68 SER A 75 1 8 HELIX 4 AA4 ALA A 84 ASP A 89 1 6 HELIX 5 AA5 TYR A 92 VAL A 99 1 8 HELIX 6 AA6 GLU A 133 ALA A 143 1 11 HELIX 7 AA7 GLU A 155 ASP A 166 1 12 HELIX 8 AA8 ASN A 187 ASN A 203 1 17 HELIX 9 AA9 ASP A 211 HIS A 221 1 11 HELIX 10 AB1 GLY A 230 TRP A 232 5 3 HELIX 11 AB2 ALA A 233 SER A 240 1 8 HELIX 12 AB3 ASN A 274 TYR A 285 1 12 HELIX 13 AB4 THR A 288 LYS A 299 1 12 HELIX 14 AB5 LEU A 306 VAL A 314 1 9 HELIX 15 AB6 ASP A 316 GLY A 329 1 14 HELIX 16 AB7 GLN A 337 SER A 354 1 18 HELIX 17 AB8 THR A 358 ALA A 372 1 15 HELIX 18 AB9 ASN A 376 ALA A 387 5 12 HELIX 19 AC1 ASP A 389 SER A 402 1 14 HELIX 20 AC2 THR A 405 LYS A 418 1 14 HELIX 21 AC3 PRO A 421 GLN A 424 5 4 HELIX 22 AC4 ASP A 425 SER A 434 1 10 SHEET 1 AA1 6 LYS A 36 GLU A 40 0 SHEET 2 AA1 6 LYS A 8 TRP A 12 1 N ILE A 11 O THR A 38 SHEET 3 AA1 6 ILE A 61 ALA A 65 1 O ILE A 61 N TRP A 12 SHEET 4 AA1 6 PHE A 260 ILE A 268 -1 O SER A 265 N TRP A 64 SHEET 5 AA1 6 TYR A 108 GLU A 113 -1 N GLU A 113 O GLY A 262 SHEET 6 AA1 6 ALA A 303 VAL A 304 -1 O ALA A 303 N VAL A 112 SHEET 1 AA2 5 LYS A 36 GLU A 40 0 SHEET 2 AA2 5 LYS A 8 TRP A 12 1 N ILE A 11 O THR A 38 SHEET 3 AA2 5 ILE A 61 ALA A 65 1 O ILE A 61 N TRP A 12 SHEET 4 AA2 5 PHE A 260 ILE A 268 -1 O SER A 265 N TRP A 64 SHEET 5 AA2 5 GLU A 330 ILE A 331 1 O GLU A 330 N VAL A 261 SHEET 1 AA3 2 ARG A 100 TYR A 101 0 SHEET 2 AA3 2 LYS A 104 LEU A 105 -1 O LYS A 104 N TYR A 101 SHEET 1 AA4 4 SER A 147 LEU A 149 0 SHEET 2 AA4 4 THR A 224 ASN A 229 1 O ALA A 225 N SER A 147 SHEET 3 AA4 4 SER A 116 ASN A 120 -1 N ILE A 118 O THR A 227 SHEET 4 AA4 4 TYR A 244 THR A 247 -1 O THR A 247 N LEU A 117 SHEET 1 AA5 2 TYR A 169 TYR A 173 0 SHEET 2 AA5 2 TYR A 178 GLY A 184 -1 O ASP A 179 N LYS A 172 SSBOND 1 CYS A 383 CYS A 430 1555 1555 2.04 SSBOND 2 CYS A 384 CYS A 396 1555 1555 1.94 SSBOND 3 CYS A 392 CYS A 417 1555 1555 2.04 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.40 LINK NE2 HIS A 217 ZN ZN A 503 1555 1555 2.28 LINK OE2 GLU A 223 ZN ZN A 503 1555 1555 2.19 LINK OE1 GLU A 311 ZN ZN A 503 1555 4555 2.66 LINK OE2 GLU A 311 ZN ZN A 503 1555 4555 1.82 LINK ZN ZN A 503 O HOH A 744 1555 4455 2.16 CRYST1 80.222 110.599 57.791 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012465 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009042 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017304 0.00000