HEADER CYTOSOLIC PROTEIN 27-MAR-20 6WBU TITLE PUTATIVE PEPTIDYL PROLYL CIS-TRANS ISOMERASE FKBP12 FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FKBP12 FROM MYCOBACTERIUM TUBERCULOSIS; COMPND 3 CHAIN: A; COMPND 4 EC: 5.2.1.8; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: 401416; SOURCE 5 GENE: FKBP_2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS ISOMERASE, FKBP, CHAPERONE, CYTOSOLIC PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.C.ANDRADE,L.F.C.SILVA,F.C.L.ALMEIDA,C.D.ANOBOM REVDAT 3 15-MAY-24 6WBU 1 REMARK REVDAT 2 14-JUN-23 6WBU 1 REMARK REVDAT 1 31-MAR-21 6WBU 0 JRNL AUTH G.C.ANDRADE,L.F.C.SILVA,D.M.P.OLIVEIRA,J.R.M.PIRES, JRNL AUTH 2 F.C.L.ALMEIDA,C.D.ANOBOM JRNL TITL STRUCTURE AND BIOCHEMICAL CHARACTERIZATION OF A PUTATIVE JRNL TITL 2 PEPTIDYL PROLYL CIS-TRANS ISOMERASE FKBP12 FROM JRNL TITL 3 MYCOBACTERIUM TUBERCULOSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WBU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247958. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.22 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-13C; U-15N] FKBP12 REMARK 210 FROM MYCOBACTERIUM TUBERCULOSIS, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D CBCA(CO)NH; 3D HNCO; REMARK 210 3D HNCA; 3D HNCACB; 3D HN(CA)CO; REMARK 210 3D HBHA(CO)NH; 3D HCCH-TOCSY; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.2, CCPNMR ANALYSIS 2.4.2, REMARK 210 TOPSPIN 3.1, NMRPIPE, ARIA 2.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 18 TYR A 101 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 3 64.28 72.89 REMARK 500 1 GLU A 6 -78.18 2.99 REMARK 500 1 ARG A 7 -67.49 -135.11 REMARK 500 1 GLU A 9 79.60 72.65 REMARK 500 1 ILE A 10 -167.13 -160.63 REMARK 500 1 ASP A 11 -70.08 70.22 REMARK 500 1 PRO A 13 29.89 -63.05 REMARK 500 1 GLU A 14 136.54 63.12 REMARK 500 1 THR A 27 152.11 84.43 REMARK 500 1 LYS A 36 109.66 58.15 REMARK 500 1 SER A 48 -164.43 51.75 REMARK 500 1 TRP A 49 -49.71 66.07 REMARK 500 1 GLU A 53 174.50 73.51 REMARK 500 1 GLU A 54 120.13 -31.84 REMARK 500 1 PHE A 55 -48.65 -140.86 REMARK 500 1 THR A 71 99.38 73.45 REMARK 500 1 LYS A 76 -7.06 -57.17 REMARK 500 1 ALA A 83 93.39 -64.39 REMARK 500 1 LEU A 99 -89.07 -158.56 REMARK 500 1 SER A 105 116.23 69.18 REMARK 500 1 ALA A 109 53.64 -174.40 REMARK 500 1 ILE A 110 108.23 -30.75 REMARK 500 1 LYS A 111 -46.67 163.13 REMARK 500 2 MET A 3 60.77 60.14 REMARK 500 2 LEU A 5 -170.57 176.49 REMARK 500 2 ARG A 7 -66.56 -152.66 REMARK 500 2 ILE A 10 -168.69 -162.56 REMARK 500 2 ASP A 11 -67.77 74.17 REMARK 500 2 PRO A 13 113.41 -35.68 REMARK 500 2 GLU A 19 32.56 75.80 REMARK 500 2 THR A 27 161.53 81.32 REMARK 500 2 SER A 48 -165.80 59.82 REMARK 500 2 TRP A 49 -51.37 62.01 REMARK 500 2 THR A 51 -9.36 -145.87 REMARK 500 2 GLU A 53 176.34 67.03 REMARK 500 2 GLU A 54 122.80 -26.61 REMARK 500 2 PHE A 55 -50.62 -149.54 REMARK 500 2 ASP A 56 147.75 -177.95 REMARK 500 2 THR A 71 104.45 74.50 REMARK 500 2 LYS A 76 -39.79 -31.50 REMARK 500 2 ALA A 83 98.87 -60.19 REMARK 500 2 LEU A 99 -93.69 -127.68 REMARK 500 2 ASP A 103 6.97 96.71 REMARK 500 2 ARG A 104 -105.07 -132.13 REMARK 500 2 SER A 105 125.05 159.93 REMARK 500 2 ALA A 109 89.17 -169.61 REMARK 500 2 LYS A 111 -55.93 107.30 REMARK 500 2 GLU A 114 -159.06 -99.86 REMARK 500 3 ALA A 2 -84.43 -86.78 REMARK 500 3 ALA A 4 -80.66 -82.07 REMARK 500 REMARK 500 THIS ENTRY HAS 549 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 27690 RELATED DB: BMRB DBREF 6WBU A 1 126 PDB 6WBU 6WBU 1 126 SEQRES 1 A 126 GLY ALA MET ALA LEU GLU ARG PRO GLU ILE ASP PHE PRO SEQRES 2 A 126 GLU GLY GLN PRO PRO GLU TYR LEU ASP ILE THR ASP ILE SEQRES 3 A 126 THR GLU GLY ASP GLY PRO GLU ALA VAL LYS GLY SER ASN SEQRES 4 A 126 VAL SER MET HIS TYR VAL GLY VAL SER TRP SER THR GLY SEQRES 5 A 126 GLU GLU PHE ASP ALA SER TRP ASN ARG GLY SER THR LEU SEQRES 6 A 126 ASP PHE THR LEU GLY THR GLY ARG VAL ILE LYS GLY TRP SEQRES 7 A 126 ASP MET GLY ILE ALA GLY MET LYS VAL GLY GLY ARG ARG SEQRES 8 A 126 LYS LEU VAL ILE PRO PRO HIS LEU ALA TYR GLY ASP ARG SEQRES 9 A 126 SER PRO SER PRO ALA ILE LYS PRO GLY GLU THR LEU ILE SEQRES 10 A 126 PHE VAL VAL ASP LEU VAL GLY VAL GLY HELIX 1 AA1 GLY A 77 ALA A 83 1 7 SHEET 1 AA1 5 ASP A 22 ILE A 26 0 SHEET 2 AA1 5 GLY A 89 VAL A 94 -1 O ARG A 90 N ILE A 26 SHEET 3 AA1 5 ILE A 117 VAL A 125 -1 O PHE A 118 N LEU A 93 SHEET 4 AA1 5 ASN A 39 VAL A 47 -1 N HIS A 43 O ASP A 121 SHEET 5 AA1 5 LEU A 65 THR A 68 -1 O LEU A 65 N MET A 42 SHEET 1 AA2 2 GLU A 33 ALA A 34 0 SHEET 2 AA2 2 MET A 85 LYS A 86 -1 O MET A 85 N ALA A 34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1