HEADER TRANSLOCASE/IMMUNE SYSTEM/HORMONE 27-MAR-20 6WBV TITLE STRUCTURE OF HUMAN FERROPORTIN BOUND TO HEPCIDIN AND COBALT IN LIPID TITLE 2 NANODISC CAVEAT 6WBV RESIDUES ARG L 112 AND ALA L 113 THAT ARE NEXT TO EACH OTHER CAVEAT 2 6WBV IN THE SAMPLE SEQUENCE ARE NOT PROPERLY LINKED. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPCIDIN; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: UNP RESIDUES 60-84; COMPND 5 SYNONYM: LIVER-EXPRESSED ANTIMICROBIAL PEPTIDE 1,LEAP-1,PUTATIVE COMPND 6 LIVER TUMOR REGRESSOR,PLTR; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SOLUTE CARRIER FAMILY 40 MEMBER 1; COMPND 10 CHAIN: A; COMPND 11 SYNONYM: FERROPORTIN-1,IRON-REGULATED TRANSPORTER 1; COMPND 12 EC: 7.-.-.-; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: FAB45D8 LIGHT CHAIN; COMPND 16 CHAIN: L; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: FAB45D8 HEAVY CHAIN; COMPND 20 CHAIN: H; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: SLC40A1, FPN1, IREG1, SLC11A3, MSTP079; SOURCE 11 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 12 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 16 ORGANISM_COMMON: MOUSE; SOURCE 17 ORGANISM_TAXID: 10090; SOURCE 18 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 19 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 21 MOL_ID: 4; SOURCE 22 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 23 ORGANISM_COMMON: MOUSE; SOURCE 24 ORGANISM_TAXID: 10090; SOURCE 25 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 26 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS FERROPORTIN, TRANSPORTER, IRON, HEPCIDIN, TRANSLOCASE-IMMUNE SYSTEM- KEYWDS 2 HORMONE COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR C.B.BILLESBOELLE,C.M.AZUMAYA,S.GONEN,A.POWERS,R.C.KRETSCH, AUTHOR 2 S.SCHNEIDER,T.ARVEDSON,R.O.DROR,Y.CHENG,A.MANGLIK REVDAT 3 23-OCT-24 6WBV 1 REMARK REVDAT 2 11-NOV-20 6WBV 1 JRNL REVDAT 1 09-SEP-20 6WBV 0 JRNL AUTH C.B.BILLESBOLLE,C.M.AZUMAYA,R.C.KRETSCH,A.S.POWERS,S.GONEN, JRNL AUTH 2 S.SCHNEIDER,T.ARVEDSON,R.O.DROR,Y.CHENG,A.MANGLIK JRNL TITL STRUCTURE OF HEPCIDIN-BOUND FERROPORTIN REVEALS IRON JRNL TITL 2 HOMEOSTATIC MECHANISMS. JRNL REF NATURE V. 586 807 2020 JRNL REFN ESSN 1476-4687 JRNL PMID 32814342 JRNL DOI 10.1038/S41586-020-2668-Z REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, SERIALEM, CTFFIND, REMARK 3 CRYOSPARC, CRYOSPARC, RELION, CISTEM REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.500 REMARK 3 NUMBER OF PARTICLES : 310647 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6WBV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247967. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : FERROPORTIN-FAB45D8 COMPLEX; REMARK 245 FERROPORTIN-HEPCIDIN COMPLEX; REMARK 245 FAB45D8 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.50 REMARK 245 SAMPLE SUPPORT DETAILS : UNSPECIFIED REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 5415 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : -8000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : -20000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6600.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 105000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ARG A 3 REMARK 465 ALA A 4 REMARK 465 GLY A 5 REMARK 465 ASP A 6 REMARK 465 HIS A 7 REMARK 465 ASN A 8 REMARK 465 ARG A 9 REMARK 465 GLN A 10 REMARK 465 ARG A 11 REMARK 465 GLY A 12 REMARK 465 CYS A 13 REMARK 465 CYS A 14 REMARK 465 GLY A 15 REMARK 465 LEU A 239 REMARK 465 LYS A 240 REMARK 465 GLU A 241 REMARK 465 GLU A 242 REMARK 465 GLU A 243 REMARK 465 THR A 244 REMARK 465 GLU A 245 REMARK 465 LEU A 246 REMARK 465 LYS A 247 REMARK 465 GLN A 248 REMARK 465 LEU A 249 REMARK 465 ASN A 250 REMARK 465 LEU A 251 REMARK 465 HIS A 252 REMARK 465 LYS A 253 REMARK 465 ASP A 254 REMARK 465 THR A 255 REMARK 465 GLU A 256 REMARK 465 PRO A 257 REMARK 465 LYS A 258 REMARK 465 PRO A 259 REMARK 465 LEU A 260 REMARK 465 GLU A 261 REMARK 465 GLY A 262 REMARK 465 THR A 263 REMARK 465 HIS A 264 REMARK 465 LEU A 265 REMARK 465 MET A 266 REMARK 465 GLY A 267 REMARK 465 VAL A 268 REMARK 465 LYS A 269 REMARK 465 ASP A 270 REMARK 465 SER A 271 REMARK 465 ASN A 272 REMARK 465 ILE A 273 REMARK 465 HIS A 274 REMARK 465 GLU A 275 REMARK 465 LEU A 276 REMARK 465 GLU A 277 REMARK 465 HIS A 278 REMARK 465 GLU A 279 REMARK 465 GLN A 280 REMARK 465 GLU A 281 REMARK 465 PRO A 282 REMARK 465 THR A 283 REMARK 465 CYS A 284 REMARK 465 ALA A 285 REMARK 465 SER A 286 REMARK 465 GLN A 287 REMARK 465 MET A 288 REMARK 465 ASP A 399 REMARK 465 LEU A 400 REMARK 465 SER A 401 REMARK 465 VAL A 402 REMARK 465 SER A 403 REMARK 465 PRO A 404 REMARK 465 PHE A 405 REMARK 465 GLU A 406 REMARK 465 ASP A 407 REMARK 465 ILE A 408 REMARK 465 ARG A 409 REMARK 465 SER A 410 REMARK 465 ARG A 411 REMARK 465 PHE A 412 REMARK 465 ILE A 413 REMARK 465 GLN A 414 REMARK 465 GLY A 415 REMARK 465 GLU A 416 REMARK 465 SER A 417 REMARK 465 ILE A 418 REMARK 465 THR A 419 REMARK 465 PRO A 420 REMARK 465 THR A 421 REMARK 465 LYS A 422 REMARK 465 ILE A 423 REMARK 465 PRO A 424 REMARK 465 GLU A 425 REMARK 465 ILE A 426 REMARK 465 THR A 427 REMARK 465 THR A 428 REMARK 465 GLU A 429 REMARK 465 ILE A 430 REMARK 465 TYR A 431 REMARK 465 MET A 432 REMARK 465 SER A 433 REMARK 465 ASN A 434 REMARK 465 GLY A 435 REMARK 465 SER A 436 REMARK 465 ASN A 437 REMARK 465 SER A 438 REMARK 465 ALA A 439 REMARK 465 ASN A 440 REMARK 465 ILE A 441 REMARK 465 VAL A 442 REMARK 465 PRO A 443 REMARK 465 GLU A 444 REMARK 465 THR A 445 REMARK 465 SER A 446 REMARK 465 PRO A 447 REMARK 465 GLU A 448 REMARK 465 SER A 449 REMARK 465 VAL A 450 REMARK 465 GLY A 547 REMARK 465 ASN A 548 REMARK 465 LYS A 549 REMARK 465 LEU A 550 REMARK 465 PHE A 551 REMARK 465 ALA A 552 REMARK 465 CYS A 553 REMARK 465 GLY A 554 REMARK 465 PRO A 555 REMARK 465 ASP A 556 REMARK 465 ALA A 557 REMARK 465 LYS A 558 REMARK 465 GLU A 559 REMARK 465 VAL A 560 REMARK 465 ARG A 561 REMARK 465 LYS A 562 REMARK 465 GLU A 563 REMARK 465 ASN A 564 REMARK 465 GLN A 565 REMARK 465 ALA A 566 REMARK 465 ASN A 567 REMARK 465 THR A 568 REMARK 465 SER A 569 REMARK 465 VAL A 570 REMARK 465 VAL A 571 REMARK 465 GLY A 572 REMARK 465 SER A 573 REMARK 465 GLY A 574 REMARK 465 LEU A 575 REMARK 465 GLU A 576 REMARK 465 VAL A 577 REMARK 465 LEU A 578 REMARK 465 PHE A 579 REMARK 465 GLN A 580 REMARK 465 GLY A 581 REMARK 465 PRO A 582 REMARK 465 GLY A 583 REMARK 465 ALA A 584 REMARK 465 ALA A 585 REMARK 465 GLU A 586 REMARK 465 ASP A 587 REMARK 465 GLN A 588 REMARK 465 VAL A 589 REMARK 465 ASP A 590 REMARK 465 PRO A 591 REMARK 465 ARG A 592 REMARK 465 LEU A 593 REMARK 465 ILE A 594 REMARK 465 ASP A 595 REMARK 465 GLY A 596 REMARK 465 LYS A 597 REMARK 465 HIS A 598 REMARK 465 HIS A 599 REMARK 465 HIS A 600 REMARK 465 HIS A 601 REMARK 465 HIS A 602 REMARK 465 HIS A 603 REMARK 465 HIS A 604 REMARK 465 HIS A 605 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 16 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 19 CG OD1 OD2 REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 PHE A 198 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 290 CG CD OE1 OE2 REMARK 470 ARG A 293 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 540 CG CD NE CZ NH1 NH2 REMARK 470 LYS L 27 CE NZ REMARK 470 LYS L 151 CG CD CE NZ REMARK 470 GLU L 158 CG CD OE1 OE2 REMARK 470 ASN L 161 CG OD1 ND2 REMARK 470 LYS L 173 CG CD CE NZ REMARK 470 GLU H 1 CG CD OE1 OE2 REMARK 470 LYS H 64 CD CE NZ REMARK 470 ARG H 101 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN L 95 O TRP H 103 1.89 REMARK 500 OG SER A 35 OE2 GLU A 219 2.11 REMARK 500 OE2 GLU A 119 OH TYR H 33 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR L 34 C TYR L 34 O -0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA L 55 CB - CA - C ANGL. DEV. = -9.9 DEGREES REMARK 500 CYS L 218 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 157 -62.81 -137.51 REMARK 500 CYS A 326 -155.37 -115.37 REMARK 500 LYS A 366 -73.29 -90.18 REMARK 500 SER L 32 -122.03 59.06 REMARK 500 TYR L 36 53.02 -106.34 REMARK 500 LEU L 54 13.13 55.21 REMARK 500 ALA L 55 1.87 88.39 REMARK 500 SER L 56 21.70 -161.83 REMARK 500 ALA L 87 109.02 -55.03 REMARK 500 ALA L 88 172.72 179.79 REMARK 500 ASN L 142 65.76 65.55 REMARK 500 SER H 15 0.28 89.81 REMARK 500 SER H 27 148.62 -178.47 REMARK 500 ASP H 32 -156.13 -117.55 REMARK 500 SER H 84 73.29 34.74 REMARK 500 ASN H 102 -67.99 -125.74 REMARK 500 TRP H 103 19.89 87.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 704 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 25 O REMARK 620 2 HIS A 507 NE2 110.5 REMARK 620 3 HOH A 806 O 120.5 98.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 703 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 39 OD1 REMARK 620 2 ASP A 39 OD2 51.3 REMARK 620 3 HIS A 43 NE2 91.7 86.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AGA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AGA A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 704 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-21539 RELATED DB: EMDB REMARK 900 RELATED ID: 6W4S RELATED DB: PDB REMARK 900 RELATED ID: EMD-21599 RELATED DB: EMDB DBREF 6WBV B 1 25 UNP P81172 HEPC_HUMAN 60 84 DBREF 6WBV A 1 571 UNP Q9NP59 S40A1_HUMAN 1 571 DBREF 6WBV L 1 218 PDB 6WBV 6WBV 1 218 DBREF 6WBV H 1 220 PDB 6WBV 6WBV 1 220 SEQADV 6WBV GLY A 572 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV SER A 573 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV GLY A 574 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV LEU A 575 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV GLU A 576 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV VAL A 577 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV LEU A 578 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV PHE A 579 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV GLN A 580 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV GLY A 581 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV PRO A 582 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV GLY A 583 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV ALA A 584 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV ALA A 585 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV GLU A 586 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV ASP A 587 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV GLN A 588 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV VAL A 589 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV ASP A 590 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV PRO A 591 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV ARG A 592 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV LEU A 593 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV ILE A 594 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV ASP A 595 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV GLY A 596 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV LYS A 597 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV HIS A 598 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV HIS A 599 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV HIS A 600 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV HIS A 601 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV HIS A 602 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV HIS A 603 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV HIS A 604 UNP Q9NP59 EXPRESSION TAG SEQADV 6WBV HIS A 605 UNP Q9NP59 EXPRESSION TAG SEQRES 1 B 25 ASP THR HIS PHE PRO ILE CYS ILE PHE CYS CYS GLY CYS SEQRES 2 B 25 CYS HIS ARG SER LYS CYS GLY MET CYS CYS LYS THR SEQRES 1 A 605 MET THR ARG ALA GLY ASP HIS ASN ARG GLN ARG GLY CYS SEQRES 2 A 605 CYS GLY SER LEU ALA ASP TYR LEU THR SER ALA LYS PHE SEQRES 3 A 605 LEU LEU TYR LEU GLY HIS SER LEU SER THR TRP GLY ASP SEQRES 4 A 605 ARG MET TRP HIS PHE ALA VAL SER VAL PHE LEU VAL GLU SEQRES 5 A 605 LEU TYR GLY ASN SER LEU LEU LEU THR ALA VAL TYR GLY SEQRES 6 A 605 LEU VAL VAL ALA GLY SER VAL LEU VAL LEU GLY ALA ILE SEQRES 7 A 605 ILE GLY ASP TRP VAL ASP LYS ASN ALA ARG LEU LYS VAL SEQRES 8 A 605 ALA GLN THR SER LEU VAL VAL GLN ASN VAL SER VAL ILE SEQRES 9 A 605 LEU CYS GLY ILE ILE LEU MET MET VAL PHE LEU HIS LYS SEQRES 10 A 605 HIS GLU LEU LEU THR MET TYR HIS GLY TRP VAL LEU THR SEQRES 11 A 605 SER CYS TYR ILE LEU ILE ILE THR ILE ALA ASN ILE ALA SEQRES 12 A 605 ASN LEU ALA SER THR ALA THR ALA ILE THR ILE GLN ARG SEQRES 13 A 605 ASP TRP ILE VAL VAL VAL ALA GLY GLU ASP ARG SER LYS SEQRES 14 A 605 LEU ALA ASN MET ASN ALA THR ILE ARG ARG ILE ASP GLN SEQRES 15 A 605 LEU THR ASN ILE LEU ALA PRO MET ALA VAL GLY GLN ILE SEQRES 16 A 605 MET THR PHE GLY SER PRO VAL ILE GLY CYS GLY PHE ILE SEQRES 17 A 605 SER GLY TRP ASN LEU VAL SER MET CYS VAL GLU TYR VAL SEQRES 18 A 605 LEU LEU TRP LYS VAL TYR GLN LYS THR PRO ALA LEU ALA SEQRES 19 A 605 VAL LYS ALA GLY LEU LYS GLU GLU GLU THR GLU LEU LYS SEQRES 20 A 605 GLN LEU ASN LEU HIS LYS ASP THR GLU PRO LYS PRO LEU SEQRES 21 A 605 GLU GLY THR HIS LEU MET GLY VAL LYS ASP SER ASN ILE SEQRES 22 A 605 HIS GLU LEU GLU HIS GLU GLN GLU PRO THR CYS ALA SER SEQRES 23 A 605 GLN MET ALA GLU PRO PHE ARG THR PHE ARG ASP GLY TRP SEQRES 24 A 605 VAL SER TYR TYR ASN GLN PRO VAL PHE LEU ALA GLY MET SEQRES 25 A 605 GLY LEU ALA PHE LEU TYR MET THR VAL LEU GLY PHE ASP SEQRES 26 A 605 CYS ILE THR THR GLY TYR ALA TYR THR GLN GLY LEU SER SEQRES 27 A 605 GLY SER ILE LEU SER ILE LEU MET GLY ALA SER ALA ILE SEQRES 28 A 605 THR GLY ILE MET GLY THR VAL ALA PHE THR TRP LEU ARG SEQRES 29 A 605 ARG LYS CYS GLY LEU VAL ARG THR GLY LEU ILE SER GLY SEQRES 30 A 605 LEU ALA GLN LEU SER CYS LEU ILE LEU CYS VAL ILE SER SEQRES 31 A 605 VAL PHE MET PRO GLY SER PRO LEU ASP LEU SER VAL SER SEQRES 32 A 605 PRO PHE GLU ASP ILE ARG SER ARG PHE ILE GLN GLY GLU SEQRES 33 A 605 SER ILE THR PRO THR LYS ILE PRO GLU ILE THR THR GLU SEQRES 34 A 605 ILE TYR MET SER ASN GLY SER ASN SER ALA ASN ILE VAL SEQRES 35 A 605 PRO GLU THR SER PRO GLU SER VAL PRO ILE ILE SER VAL SEQRES 36 A 605 SER LEU LEU PHE ALA GLY VAL ILE ALA ALA ARG ILE GLY SEQRES 37 A 605 LEU TRP SER PHE ASP LEU THR VAL THR GLN LEU LEU GLN SEQRES 38 A 605 GLU ASN VAL ILE GLU SER GLU ARG GLY ILE ILE ASN GLY SEQRES 39 A 605 VAL GLN ASN SER MET ASN TYR LEU LEU ASP LEU LEU HIS SEQRES 40 A 605 PHE ILE MET VAL ILE LEU ALA PRO ASN PRO GLU ALA PHE SEQRES 41 A 605 GLY LEU LEU VAL LEU ILE SER VAL SER PHE VAL ALA MET SEQRES 42 A 605 GLY HIS ILE MET TYR PHE ARG PHE ALA GLN ASN THR LEU SEQRES 43 A 605 GLY ASN LYS LEU PHE ALA CYS GLY PRO ASP ALA LYS GLU SEQRES 44 A 605 VAL ARG LYS GLU ASN GLN ALA ASN THR SER VAL VAL GLY SEQRES 45 A 605 SER GLY LEU GLU VAL LEU PHE GLN GLY PRO GLY ALA ALA SEQRES 46 A 605 GLU ASP GLN VAL ASP PRO ARG LEU ILE ASP GLY LYS HIS SEQRES 47 A 605 HIS HIS HIS HIS HIS HIS HIS SEQRES 1 L 218 ASP ILE VAL LEU THR GLN SER PRO ALA SER LEU PRO VAL SEQRES 2 L 218 SER LEU GLY GLN ARG ALA THR ILE SER CYS ARG ALA SER SEQRES 3 L 218 LYS SER VAL SER ALA SER ALA TYR SER TYR MET HIS TRP SEQRES 4 L 218 TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS PRO LEU ILE SEQRES 5 L 218 TYR LEU ALA SER ASN LEU GLU SER GLY VAL PRO ALA ARG SEQRES 6 L 218 PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU ASN SEQRES 7 L 218 ILE HIS PRO VAL GLU GLU GLU ASP ALA ALA THR TYR TYR SEQRES 8 L 218 CYS GLN HIS ASN ARG GLU LEU PRO TYR THR PHE GLY GLY SEQRES 9 L 218 GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA PRO SEQRES 10 L 218 THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU THR SEQRES 11 L 218 SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN PHE SEQRES 12 L 218 TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SEQRES 13 L 218 SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR ASP SEQRES 14 L 218 GLN ASP SER LYS ASP SER THR TYR SER MET SER SER THR SEQRES 15 L 218 LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SER SEQRES 16 L 218 TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER PRO SEQRES 17 L 218 ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 H 220 GLU VAL GLN LEU GLN GLU SER GLY PRO GLY LEU ALA LYS SEQRES 2 H 220 PRO SER GLN THR LEU SER LEU THR CYS SER VAL THR GLY SEQRES 3 H 220 SER SER ILE THR SER ASP TYR TRP ASN TRP ILE ARG LYS SEQRES 4 H 220 PHE PRO GLY ASN LYS LEU GLU TYR MET GLY TYR ILE SER SEQRES 5 H 220 TYR SER GLY SER THR TYR TYR ASN PRO SER LEU LYS SER SEQRES 6 H 220 GLN ILE SER ILE THR ARG ASP THR SER LYS ASN HIS TYR SEQRES 7 H 220 TYR LEU GLN LEU ASN SER VAL THR THR GLU ASP THR ALA SEQRES 8 H 220 THR TYR TYR CYS ALA ARG GLN GLY LEU ARG ASN TRP TYR SEQRES 9 H 220 PHE ASP VAL TRP GLY THR GLY THR THR VAL THR VAL SER SEQRES 10 H 220 SER ALA LYS THR THR ALA PRO SER VAL TYR PRO LEU ALA SEQRES 11 H 220 PRO VAL CYS GLY GLY THR THR GLY SER SER VAL THR LEU SEQRES 12 H 220 GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 220 LEU THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS SEQRES 14 H 220 THR PHE PRO ALA LEU LEU GLN SER GLY LEU TYR THR LEU SEQRES 15 H 220 SER SER SER VAL THR VAL THR SER ASN THR TRP PRO SER SEQRES 16 H 220 GLN THR ILE THR CYS ASN VAL ALA HIS PRO ALA SER SER SEQRES 17 H 220 THR LYS VAL ASP LYS LYS ILE GLU PRO ARG VAL PRO HET AGA A 701 30 HET AGA A 702 30 HET CO A 703 1 HET CO A 704 1 HETNAM AGA (1S)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) HETNAM 2 AGA PHOSPHORYL]OXY}-1-[(PENTANOYLOXY)METHYL]ETHYL HETNAM 3 AGA OCTANOATE HETNAM CO COBALT (II) ION HETSYN AGA PHOSPHATIDYL GLYCEROL FORMUL 5 AGA 2(C19 H36 O10 P 1-) FORMUL 7 CO 2(CO 2+) FORMUL 9 HOH *11(H2 O) HELIX 1 AA1 LEU A 17 LEU A 21 1 5 HELIX 2 AA2 SER A 23 TYR A 54 1 32 HELIX 3 AA3 LEU A 58 ASN A 86 1 29 HELIX 4 AA4 ALA A 87 HIS A 116 1 30 HELIX 5 AA5 HIS A 116 MET A 123 1 8 HELIX 6 AA6 HIS A 125 ARG A 156 1 32 HELIX 7 AA7 ASP A 157 ALA A 163 1 7 HELIX 8 AA8 ASP A 166 GLY A 199 1 34 HELIX 9 AA9 SER A 200 THR A 230 1 31 HELIX 10 AB1 PRO A 231 VAL A 235 5 5 HELIX 11 AB2 GLU A 290 ASN A 304 1 15 HELIX 12 AB3 VAL A 307 LEU A 317 1 11 HELIX 13 AB4 ILE A 327 GLN A 335 1 9 HELIX 14 AB5 SER A 338 CYS A 367 1 30 HELIX 15 AB6 GLY A 368 VAL A 391 1 24 HELIX 16 AB7 ILE A 452 VAL A 484 1 33 HELIX 17 AB8 ILE A 485 SER A 487 5 3 HELIX 18 AB9 GLU A 488 ALA A 514 1 27 HELIX 19 AC1 ASN A 516 LEU A 546 1 31 HELIX 20 AC2 GLU L 83 ALA L 87 5 5 HELIX 21 AC3 SER L 125 SER L 131 1 7 HELIX 22 AC4 LYS L 187 GLU L 191 1 5 HELIX 23 AC5 THR H 86 THR H 90 5 5 HELIX 24 AC6 SER H 161 SER H 163 5 3 HELIX 25 AC7 PRO H 205 SER H 208 5 4 SHEET 1 AA1 2 CYS B 7 CYS B 11 0 SHEET 2 AA1 2 CYS B 19 CYS B 23 -1 O GLY B 20 N CYS B 10 SHEET 1 AA2 4 LEU L 4 SER L 7 0 SHEET 2 AA2 4 ALA L 19 ALA L 25 -1 O SER L 22 N SER L 7 SHEET 3 AA2 4 ASP L 74 ILE L 79 -1 O LEU L 77 N ILE L 21 SHEET 4 AA2 4 PHE L 66 SER L 71 -1 N SER L 67 O ASN L 78 SHEET 1 AA3 6 SER L 10 VAL L 13 0 SHEET 2 AA3 6 THR L 106 ILE L 110 1 O LYS L 107 N LEU L 11 SHEET 3 AA3 6 ALA L 88 HIS L 94 -1 N ALA L 88 O LEU L 108 SHEET 4 AA3 6 MET L 37 GLN L 42 -1 N GLN L 42 O THR L 89 SHEET 5 AA3 6 LYS L 49 TYR L 53 -1 O LYS L 49 N GLN L 41 SHEET 6 AA3 6 ASN L 57 LEU L 58 -1 O ASN L 57 N TYR L 53 SHEET 1 AA4 4 SER L 10 VAL L 13 0 SHEET 2 AA4 4 THR L 106 ILE L 110 1 O LYS L 107 N LEU L 11 SHEET 3 AA4 4 ALA L 88 HIS L 94 -1 N ALA L 88 O LEU L 108 SHEET 4 AA4 4 THR L 101 PHE L 102 -1 O THR L 101 N HIS L 94 SHEET 1 AA5 2 SER L 30 ALA L 31 0 SHEET 2 AA5 2 TYR L 34 SER L 35 -1 O TYR L 34 N ALA L 31 SHEET 1 AA6 4 THR L 118 PHE L 122 0 SHEET 2 AA6 4 GLY L 133 PHE L 143 -1 O VAL L 137 N PHE L 122 SHEET 3 AA6 4 TYR L 177 THR L 186 -1 O LEU L 183 N VAL L 136 SHEET 4 AA6 4 VAL L 163 TRP L 167 -1 N SER L 166 O SER L 180 SHEET 1 AA7 4 SER L 157 ARG L 159 0 SHEET 2 AA7 4 ASN L 149 ILE L 154 -1 N ILE L 154 O SER L 157 SHEET 3 AA7 4 SER L 195 THR L 201 -1 O THR L 201 N ASN L 149 SHEET 4 AA7 4 ILE L 209 ASN L 214 -1 O ILE L 209 N ALA L 200 SHEET 1 AA8 4 GLN H 3 SER H 7 0 SHEET 2 AA8 4 LEU H 18 THR H 25 -1 O THR H 21 N SER H 7 SHEET 3 AA8 4 HIS H 77 ASN H 83 -1 O TYR H 78 N CYS H 22 SHEET 4 AA8 4 GLN H 66 ASP H 72 -1 N SER H 68 O GLN H 81 SHEET 1 AA9 6 LEU H 11 ALA H 12 0 SHEET 2 AA9 6 THR H 112 VAL H 116 1 O THR H 115 N ALA H 12 SHEET 3 AA9 6 ALA H 91 GLN H 98 -1 N TYR H 93 O THR H 112 SHEET 4 AA9 6 TYR H 33 LYS H 39 -1 N ILE H 37 O TYR H 94 SHEET 5 AA9 6 LEU H 45 SER H 52 -1 O GLU H 46 N ARG H 38 SHEET 6 AA9 6 THR H 57 TYR H 59 -1 O TYR H 58 N TYR H 50 SHEET 1 AB1 4 LEU H 11 ALA H 12 0 SHEET 2 AB1 4 THR H 112 VAL H 116 1 O THR H 115 N ALA H 12 SHEET 3 AB1 4 ALA H 91 GLN H 98 -1 N TYR H 93 O THR H 112 SHEET 4 AB1 4 PHE H 105 TRP H 108 -1 O VAL H 107 N ARG H 97 SHEET 1 AB2 4 SER H 125 LEU H 129 0 SHEET 2 AB2 4 SER H 140 TYR H 150 -1 O LYS H 148 N SER H 125 SHEET 3 AB2 4 LEU H 179 THR H 189 -1 O TYR H 180 N TYR H 150 SHEET 4 AB2 4 VAL H 168 THR H 170 -1 N HIS H 169 O SER H 185 SHEET 1 AB3 4 SER H 125 LEU H 129 0 SHEET 2 AB3 4 SER H 140 TYR H 150 -1 O LYS H 148 N SER H 125 SHEET 3 AB3 4 LEU H 179 THR H 189 -1 O TYR H 180 N TYR H 150 SHEET 4 AB3 4 LEU H 174 GLN H 176 -1 N GLN H 176 O LEU H 179 SHEET 1 AB4 3 THR H 156 TRP H 159 0 SHEET 2 AB4 3 THR H 199 HIS H 204 -1 O ALA H 203 N THR H 156 SHEET 3 AB4 3 THR H 209 LYS H 214 -1 O VAL H 211 N VAL H 202 SSBOND 1 CYS B 7 CYS B 23 1555 1555 2.03 SSBOND 2 CYS B 10 CYS B 13 1555 1555 2.02 SSBOND 3 CYS B 11 CYS B 19 1555 1555 2.03 SSBOND 4 CYS B 14 CYS B 22 1555 1555 2.03 SSBOND 5 CYS L 23 CYS L 92 1555 1555 2.05 SSBOND 6 CYS L 138 CYS L 198 1555 1555 2.05 SSBOND 7 CYS L 218 CYS H 133 1555 1555 2.03 SSBOND 8 CYS H 22 CYS H 95 1555 1555 2.04 SSBOND 9 CYS H 145 CYS H 200 1555 1555 2.04 LINK O THR B 25 CO CO A 704 1555 1555 1.80 LINK OD1 ASP A 39 CO CO A 703 1555 1555 2.76 LINK OD2 ASP A 39 CO CO A 703 1555 1555 2.12 LINK NE2 HIS A 43 CO CO A 703 1555 1555 2.43 LINK NE2 HIS A 507 CO CO A 704 1555 1555 2.11 LINK CO CO A 704 O HOH A 806 1555 1555 1.80 CISPEP 1 SER L 7 PRO L 8 0 -5.76 CISPEP 2 HIS L 80 PRO L 81 0 -6.45 CISPEP 3 LEU L 98 PRO L 99 0 -9.77 CISPEP 4 TYR L 144 PRO L 145 0 9.92 CISPEP 5 PHE H 151 PRO H 152 0 -5.97 CISPEP 6 GLU H 153 PRO H 154 0 -3.52 CISPEP 7 TRP H 193 PRO H 194 0 1.14 SITE 1 AC1 5 TYR A 20 TYR A 29 SER A 33 THR A 176 SITE 2 AC1 5 ARG A 179 SITE 1 AC2 6 LEU A 21 THR A 22 PHE A 26 LEU A 27 SITE 2 AC2 6 LYS A 225 LYS A 229 SITE 1 AC3 2 ASP A 39 HIS A 43 SITE 1 AC4 4 CYS A 326 HIS A 507 HOH A 806 THR B 25 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000