HEADER TRANSCRIPTION 29-MAR-20 6WC5 TITLE CRYSTAL STRUCTURE OF A TERNARY MEF2B/NKX2-5/MYOCARDIN ENHANCER DNA TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOCYTE-SPECIFIC ENHANCER FACTOR 2B; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: RSRFR2,SERUM RESPONSE FACTOR-LIKE PROTEIN 2; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MYOCARDIN ENHANCER DNA; COMPND 8 CHAIN: E, G; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: MYOCARDIN ENHANCER DNA; COMPND 12 CHAIN: F, H; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: HOMEOBOX PROTEIN NKX-2.5; COMPND 16 CHAIN: I, N; COMPND 17 SYNONYM: CARDIAC-SPECIFIC HOMEOBOX,HOMEOBOX PROTEIN CSX,HOMEOBOX COMPND 18 PROTEIN NK-2 HOMOLOG E; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MEF2B, XMEF2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630; SOURCE 16 MOL_ID: 4; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606; SOURCE 20 GENE: NKX2-5, CSX, NKX2.5, NKX2E; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION COMPLEX, CARDIOGENESIS, CARCINOGENESIS, MADS-BOX AND KEYWDS 2 HOMEOBOX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR L.CHEN,X.LEI REVDAT 4 18-OCT-23 6WC5 1 REMARK REVDAT 3 30-SEP-20 6WC5 1 JRNL REVDAT 2 29-JUL-20 6WC5 1 JRNL REVDAT 1 22-JUL-20 6WC5 0 JRNL AUTH X.LEI,J.ZHAO,J.M.SAGENDORF,N.RAJASHEKAR,J.XU, JRNL AUTH 2 A.C.DANTAS MACHADO,C.SEN,R.ROHS,P.FENG,L.CHEN JRNL TITL CRYSTAL STRUCTURES OF TERNARY COMPLEXES OF MEF2 AND NKX2-5 JRNL TITL 2 BOUND TO DNA REVEAL A DISEASE RELATED PROTEIN-PROTEIN JRNL TITL 3 INTERACTION INTERFACE. JRNL REF J.MOL.BIOL. V. 432 5499 2020 JRNL REFN ESSN 1089-8638 JRNL PMID 32681840 JRNL DOI 10.1016/J.JMB.2020.07.004 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 17451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 884 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1325 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.3430 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3951 REMARK 3 NUCLEIC ACID ATOMS : 1751 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 3 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.10000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : 1.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.430 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.328 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 39.751 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5967 ; 0.004 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4894 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8376 ; 1.171 ; 1.489 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11360 ; 1.223 ; 1.878 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 463 ; 6.468 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 259 ;27.182 ;19.730 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 828 ;16.889 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;20.206 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 781 ; 0.153 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5373 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1340 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 9 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 89 B 2 89 2385 0.160 0.050 REMARK 3 2 A 2 89 C 2 89 2439 0.130 0.050 REMARK 3 3 A 2 89 D 2 89 2388 0.150 0.050 REMARK 3 4 B 2 91 C 2 91 2466 0.170 0.050 REMARK 3 5 B 2 91 D 2 91 2471 0.150 0.050 REMARK 3 6 C 2 91 D 2 91 2467 0.150 0.050 REMARK 3 7 E 1 20 G 1 20 1826 0.020 0.050 REMARK 3 8 F 1 20 H 1 20 1774 0.050 0.050 REMARK 3 9 I 142 193 N 142 193 1611 0.180 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): -22.6620 -9.1080 -3.3770 REMARK 3 T TENSOR REMARK 3 T11: 0.3079 T22: 0.4229 REMARK 3 T33: 0.1231 T12: 0.0063 REMARK 3 T13: -0.0589 T23: 0.1496 REMARK 3 L TENSOR REMARK 3 L11: 4.3135 L22: 6.4290 REMARK 3 L33: 4.4470 L12: -0.3188 REMARK 3 L13: -1.7585 L23: 0.7360 REMARK 3 S TENSOR REMARK 3 S11: 0.0435 S12: 0.2405 S13: 0.5007 REMARK 3 S21: 0.2436 S22: 0.3091 S23: -0.2216 REMARK 3 S31: -0.1691 S32: -0.1139 S33: -0.3526 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 91 REMARK 3 ORIGIN FOR THE GROUP (A): -27.6910 -8.4220 1.2780 REMARK 3 T TENSOR REMARK 3 T11: 0.3882 T22: 0.3391 REMARK 3 T33: 0.1304 T12: 0.0345 REMARK 3 T13: -0.0135 T23: 0.0980 REMARK 3 L TENSOR REMARK 3 L11: 4.9895 L22: 3.5027 REMARK 3 L33: 5.3285 L12: -0.0873 REMARK 3 L13: -1.9979 L23: -1.3160 REMARK 3 S TENSOR REMARK 3 S11: 0.0245 S12: 0.2470 S13: 0.3167 REMARK 3 S21: 0.1307 S22: 0.2575 S23: 0.4786 REMARK 3 S31: -0.1803 S32: -0.3907 S33: -0.2819 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 91 REMARK 3 ORIGIN FOR THE GROUP (A): -45.7860 13.7130 -27.5060 REMARK 3 T TENSOR REMARK 3 T11: 0.3362 T22: 0.2303 REMARK 3 T33: 0.0959 T12: -0.0077 REMARK 3 T13: 0.0438 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 3.7405 L22: 4.9975 REMARK 3 L33: 3.9925 L12: -0.7018 REMARK 3 L13: 0.4426 L23: -1.5646 REMARK 3 S TENSOR REMARK 3 S11: -0.2172 S12: 0.0963 S13: -0.5029 REMARK 3 S21: -0.0848 S22: 0.0775 S23: 0.2861 REMARK 3 S31: 0.1271 S32: -0.0130 S33: 0.1397 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 91 REMARK 3 ORIGIN FOR THE GROUP (A): -40.8340 11.6810 -23.0200 REMARK 3 T TENSOR REMARK 3 T11: 0.3038 T22: 0.1793 REMARK 3 T33: 0.0784 T12: 0.0582 REMARK 3 T13: 0.1065 T23: 0.0377 REMARK 3 L TENSOR REMARK 3 L11: 5.2930 L22: 6.0046 REMARK 3 L33: 4.8144 L12: 0.1555 REMARK 3 L13: 2.1435 L23: 0.5992 REMARK 3 S TENSOR REMARK 3 S11: -0.2414 S12: 0.1210 S13: -0.4013 REMARK 3 S21: -0.0420 S22: 0.1797 S23: -0.2410 REMARK 3 S31: 0.1886 S32: 0.1852 S33: 0.0617 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 21 REMARK 3 ORIGIN FOR THE GROUP (A): -25.0500 -25.0550 12.3230 REMARK 3 T TENSOR REMARK 3 T11: 0.4184 T22: 0.3307 REMARK 3 T33: 0.0646 T12: 0.0080 REMARK 3 T13: -0.0467 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 1.2208 L22: 0.8944 REMARK 3 L33: 8.4283 L12: 0.0714 REMARK 3 L13: -0.9147 L23: 0.8247 REMARK 3 S TENSOR REMARK 3 S11: 0.1499 S12: 0.0141 S13: -0.1324 REMARK 3 S21: 0.0617 S22: 0.2525 S23: -0.1272 REMARK 3 S31: 0.2422 S32: 0.2945 S33: -0.4024 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 1 F 21 REMARK 3 ORIGIN FOR THE GROUP (A): -25.1090 -24.9960 12.7830 REMARK 3 T TENSOR REMARK 3 T11: 0.4504 T22: 0.3336 REMARK 3 T33: 0.0429 T12: -0.0433 REMARK 3 T13: 0.0006 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.3723 L22: 1.7027 REMARK 3 L33: 6.9603 L12: -0.5408 REMARK 3 L13: -2.1604 L23: 0.0401 REMARK 3 S TENSOR REMARK 3 S11: 0.0355 S12: 0.0348 S13: 0.0564 REMARK 3 S21: 0.0521 S22: 0.2218 S23: -0.1614 REMARK 3 S31: 0.2699 S32: -0.0833 S33: -0.2573 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 1 G 22 REMARK 3 ORIGIN FOR THE GROUP (A): -38.4270 28.2470 -14.5390 REMARK 3 T TENSOR REMARK 3 T11: 0.4020 T22: 0.3201 REMARK 3 T33: 0.0418 T12: -0.0167 REMARK 3 T13: -0.0140 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 1.0914 L22: 1.1378 REMARK 3 L33: 10.1240 L12: -0.2936 REMARK 3 L13: 1.9207 L23: -0.8811 REMARK 3 S TENSOR REMARK 3 S11: 0.0876 S12: 0.0412 S13: 0.0601 REMARK 3 S21: 0.0152 S22: 0.1086 S23: -0.1409 REMARK 3 S31: -0.3618 S32: -0.0157 S33: -0.1962 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 0 H 21 REMARK 3 ORIGIN FOR THE GROUP (A): -38.5450 27.7080 -13.9400 REMARK 3 T TENSOR REMARK 3 T11: 0.3297 T22: 0.3350 REMARK 3 T33: 0.0258 T12: -0.0341 REMARK 3 T13: -0.0393 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 0.9841 L22: 1.6443 REMARK 3 L33: 8.5784 L12: -0.2587 REMARK 3 L13: 2.1078 L23: -0.9954 REMARK 3 S TENSOR REMARK 3 S11: -0.0048 S12: -0.0248 S13: 0.0311 REMARK 3 S21: 0.0139 S22: 0.1040 S23: -0.1330 REMARK 3 S31: -0.0214 S32: 0.4134 S33: -0.0993 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : I 142 I 196 REMARK 3 ORIGIN FOR THE GROUP (A): -32.6880 -33.6070 29.6510 REMARK 3 T TENSOR REMARK 3 T11: 0.3601 T22: 0.1709 REMARK 3 T33: 0.0294 T12: 0.0556 REMARK 3 T13: 0.0483 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 6.7008 L22: 8.6492 REMARK 3 L33: 6.6714 L12: -1.5148 REMARK 3 L13: 0.4583 L23: -0.1593 REMARK 3 S TENSOR REMARK 3 S11: -0.0639 S12: 0.0164 S13: -0.3789 REMARK 3 S21: 0.2225 S22: -0.0014 S23: 0.2252 REMARK 3 S31: 0.2442 S32: -0.2029 S33: 0.0654 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : N 140 N 194 REMARK 3 ORIGIN FOR THE GROUP (A): -29.2070 35.5770 4.8570 REMARK 3 T TENSOR REMARK 3 T11: 0.4828 T22: 0.3729 REMARK 3 T33: 0.3340 T12: 0.0529 REMARK 3 T13: -0.1855 T23: -0.1133 REMARK 3 L TENSOR REMARK 3 L11: 5.1806 L22: 7.7320 REMARK 3 L33: 4.5220 L12: 2.5615 REMARK 3 L13: 0.5697 L23: -0.5047 REMARK 3 S TENSOR REMARK 3 S11: -0.1274 S12: 0.1401 S13: 0.3573 REMARK 3 S21: -0.1358 S22: 0.0302 S23: -0.8393 REMARK 3 S31: -0.3531 S32: 0.1417 S33: 0.0972 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6WC5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000248001. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.032 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18336 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 77.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1N6J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.0, 18% PEG 2000, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.02000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.25000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.62000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.25000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.02000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.62000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 91 REMARK 465 DG E 22 REMARK 465 DC F 0 REMARK 465 LYS I 140 REMARK 465 PRO I 141 REMARK 465 ARG N 195 REMARK 465 GLN N 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DC F 1 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 12 55.38 -105.37 REMARK 500 TYR A 72 86.56 -160.15 REMARK 500 SER A 73 70.26 -103.78 REMARK 500 PRO A 75 106.65 -52.15 REMARK 500 LYS A 89 89.59 -68.62 REMARK 500 ARG B 3 91.99 64.54 REMARK 500 LYS B 4 132.89 91.33 REMARK 500 TYR D 72 102.67 -51.53 REMARK 500 VAL I 143 126.63 54.12 REMARK 500 LYS I 176 39.75 70.24 REMARK 500 GLN N 147 -29.02 85.39 REMARK 500 SER N 173 38.00 -87.10 REMARK 500 VAL N 174 -82.47 -122.53 REMARK 500 LEU N 175 -28.01 -15.79 REMARK 500 LYS N 176 38.76 73.90 REMARK 500 REMARK 500 REMARK: NULL DBREF 6WC5 A 2 91 UNP Q02080 MEF2B_HUMAN 2 91 DBREF 6WC5 B 2 91 UNP Q02080 MEF2B_HUMAN 2 91 DBREF 6WC5 C 2 91 UNP Q02080 MEF2B_HUMAN 2 91 DBREF 6WC5 D 2 91 UNP Q02080 MEF2B_HUMAN 2 91 DBREF 6WC5 E 1 22 PDB 6WC5 6WC5 1 22 DBREF 6WC5 F 0 21 PDB 6WC5 6WC5 0 21 DBREF 6WC5 G 1 22 PDB 6WC5 6WC5 1 22 DBREF 6WC5 H 0 21 PDB 6WC5 6WC5 0 21 DBREF 6WC5 I 140 196 UNP P52952 NKX25_HUMAN 140 196 DBREF 6WC5 N 140 196 UNP P52952 NKX25_HUMAN 140 196 SEQADV 6WC5 SER I 193 UNP P52952 CYS 193 CONFLICT SEQADV 6WC5 SER N 193 UNP P52952 CYS 193 CONFLICT SEQRES 1 A 90 GLY ARG LYS LYS ILE GLN ILE SER ARG ILE LEU ASP GLN SEQRES 2 A 90 ARG ASN ARG GLN VAL THR PHE THR LYS ARG LYS PHE GLY SEQRES 3 A 90 LEU MET LYS LYS ALA TYR GLU LEU SER VAL LEU CYS ASP SEQRES 4 A 90 CYS GLU ILE ALA LEU ILE ILE PHE ASN SER ALA ASN ARG SEQRES 5 A 90 LEU PHE GLN TYR ALA SER THR ASP MET ASP ARG VAL LEU SEQRES 6 A 90 LEU LYS TYR THR GLU TYR SER GLU PRO HIS GLU SER ARG SEQRES 7 A 90 THR ASN THR ASP ILE LEU GLU THR LEU LYS ARG ARG SEQRES 1 B 90 GLY ARG LYS LYS ILE GLN ILE SER ARG ILE LEU ASP GLN SEQRES 2 B 90 ARG ASN ARG GLN VAL THR PHE THR LYS ARG LYS PHE GLY SEQRES 3 B 90 LEU MET LYS LYS ALA TYR GLU LEU SER VAL LEU CYS ASP SEQRES 4 B 90 CYS GLU ILE ALA LEU ILE ILE PHE ASN SER ALA ASN ARG SEQRES 5 B 90 LEU PHE GLN TYR ALA SER THR ASP MET ASP ARG VAL LEU SEQRES 6 B 90 LEU LYS TYR THR GLU TYR SER GLU PRO HIS GLU SER ARG SEQRES 7 B 90 THR ASN THR ASP ILE LEU GLU THR LEU LYS ARG ARG SEQRES 1 C 90 GLY ARG LYS LYS ILE GLN ILE SER ARG ILE LEU ASP GLN SEQRES 2 C 90 ARG ASN ARG GLN VAL THR PHE THR LYS ARG LYS PHE GLY SEQRES 3 C 90 LEU MET LYS LYS ALA TYR GLU LEU SER VAL LEU CYS ASP SEQRES 4 C 90 CYS GLU ILE ALA LEU ILE ILE PHE ASN SER ALA ASN ARG SEQRES 5 C 90 LEU PHE GLN TYR ALA SER THR ASP MET ASP ARG VAL LEU SEQRES 6 C 90 LEU LYS TYR THR GLU TYR SER GLU PRO HIS GLU SER ARG SEQRES 7 C 90 THR ASN THR ASP ILE LEU GLU THR LEU LYS ARG ARG SEQRES 1 D 90 GLY ARG LYS LYS ILE GLN ILE SER ARG ILE LEU ASP GLN SEQRES 2 D 90 ARG ASN ARG GLN VAL THR PHE THR LYS ARG LYS PHE GLY SEQRES 3 D 90 LEU MET LYS LYS ALA TYR GLU LEU SER VAL LEU CYS ASP SEQRES 4 D 90 CYS GLU ILE ALA LEU ILE ILE PHE ASN SER ALA ASN ARG SEQRES 5 D 90 LEU PHE GLN TYR ALA SER THR ASP MET ASP ARG VAL LEU SEQRES 6 D 90 LEU LYS TYR THR GLU TYR SER GLU PRO HIS GLU SER ARG SEQRES 7 D 90 THR ASN THR ASP ILE LEU GLU THR LEU LYS ARG ARG SEQRES 1 E 22 DA DA DG DC DA DC DT DT DT DC DT DT DA SEQRES 2 E 22 DA DA DA DT DA DG DT DG DG SEQRES 1 F 22 DC DC DA DC DT DA DT DT DT DT DA DA DG SEQRES 2 F 22 DA DA DA DG DT DG DC DT DT SEQRES 1 G 22 DA DA DG DC DA DC DT DT DT DC DT DT DA SEQRES 2 G 22 DA DA DA DT DA DG DT DG DG SEQRES 1 H 22 DC DC DA DC DT DA DT DT DT DT DA DA DG SEQRES 2 H 22 DA DA DA DG DT DG DC DT DT SEQRES 1 I 57 LYS PRO ARG VAL LEU PHE SER GLN ALA GLN VAL TYR GLU SEQRES 2 I 57 LEU GLU ARG ARG PHE LYS GLN GLN ARG TYR LEU SER ALA SEQRES 3 I 57 PRO GLU ARG ASP GLN LEU ALA SER VAL LEU LYS LEU THR SEQRES 4 I 57 SER THR GLN VAL LYS ILE TRP PHE GLN ASN ARG ARG TYR SEQRES 5 I 57 LYS SER LYS ARG GLN SEQRES 1 N 57 LYS PRO ARG VAL LEU PHE SER GLN ALA GLN VAL TYR GLU SEQRES 2 N 57 LEU GLU ARG ARG PHE LYS GLN GLN ARG TYR LEU SER ALA SEQRES 3 N 57 PRO GLU ARG ASP GLN LEU ALA SER VAL LEU LYS LEU THR SEQRES 4 N 57 SER THR GLN VAL LYS ILE TRP PHE GLN ASN ARG ARG TYR SEQRES 5 N 57 LYS SER LYS ARG GLN FORMUL 11 HOH *3(H2 O) HELIX 1 AA1 ASP A 13 CYS A 39 1 27 HELIX 2 AA2 ASP A 61 GLU A 71 1 11 HELIX 3 AA3 THR A 80 LYS A 89 1 10 HELIX 4 AA4 ASP B 13 CYS B 39 1 27 HELIX 5 AA5 ASP B 61 GLU B 71 1 11 HELIX 6 AA6 THR B 80 ARG B 90 1 11 HELIX 7 AA7 ASP C 13 CYS C 39 1 27 HELIX 8 AA8 ASP C 61 GLU C 71 1 11 HELIX 9 AA9 THR C 80 ARG C 90 1 11 HELIX 10 AB1 ASP D 13 CYS D 39 1 27 HELIX 11 AB2 ASP D 61 TYR D 72 1 12 HELIX 12 AB3 THR D 80 ARG D 90 1 11 HELIX 13 AB4 SER I 146 GLN I 160 1 15 HELIX 14 AB5 SER I 164 LYS I 176 1 13 HELIX 15 AB6 THR I 178 ARG I 195 1 18 HELIX 16 AB7 GLN N 147 GLN N 160 1 14 HELIX 17 AB8 SER N 164 LYS N 176 1 13 HELIX 18 AB9 THR N 178 LYS N 194 1 17 SHEET 1 AA1 6 GLU A 77 ARG A 79 0 SHEET 2 AA1 6 LEU B 54 ALA B 58 1 O GLN B 56 N GLU A 77 SHEET 3 AA1 6 GLU B 42 PHE B 48 -1 N LEU B 45 O TYR B 57 SHEET 4 AA1 6 GLU A 42 PHE A 48 -1 N ILE A 46 O ALA B 44 SHEET 5 AA1 6 LEU A 54 ALA A 58 -1 O TYR A 57 N LEU A 45 SHEET 6 AA1 6 GLU B 77 ARG B 79 1 O GLU B 77 N GLN A 56 SHEET 1 AA2 6 GLU C 77 ARG C 79 0 SHEET 2 AA2 6 LEU D 54 ALA D 58 1 O GLN D 56 N GLU C 77 SHEET 3 AA2 6 GLU D 42 PHE D 48 -1 N LEU D 45 O TYR D 57 SHEET 4 AA2 6 GLU C 42 PHE C 48 -1 N ALA C 44 O ILE D 46 SHEET 5 AA2 6 LEU C 54 ALA C 58 -1 O TYR C 57 N LEU C 45 SHEET 6 AA2 6 GLU D 77 ARG D 79 1 O GLU D 77 N GLN C 56 CRYST1 66.040 93.240 136.500 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015142 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010725 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007326 0.00000