HEADER IMMUNE SYSTEM 05-APR-20 6WGL TITLE DUPILUMAB FAB WITH CRYSTAL KAPPA DESIGN COMPLEXED WITH HUMAN IL-4 TITLE 2 RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUPILUMAB FAB HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DUPILUMAB FAB LIGHT CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: INTERLEUKIN-4 RECEPTOR SUBUNIT ALPHA; COMPND 11 CHAIN: C; COMPND 12 SYNONYM: IL-4RA; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: IL4R, IL4RA, 582J2.1; SOURCE 20 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 21 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS DUPILUMAB, HIL4R, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Z.DRUZINA,S.ATWELL,A.PUSTILNIK,S.ANTONYSAMY,C.HO,R.LIEU,J.HENDLE, AUTHOR 2 J.BENACH,J.WANG REVDAT 3 18-OCT-23 6WGL 1 REMARK REVDAT 2 23-SEP-20 6WGL 1 JRNL REMARK LINK ATOM REVDAT 1 16-SEP-20 6WGL 0 JRNL AUTH R.LIEU,S.ANTONYSAMY,Z.DRUZINA,C.HO,N.R.KANG,A.PUSTILNIK, JRNL AUTH 2 J.WANG,S.ATWELL JRNL TITL RAPID AND ROBUST ANTIBODY FAB FRAGMENT CRYSTALLIZATION JRNL TITL 2 UTILIZING EDGE-TO-EDGE BETA-SHEET PACKING. JRNL REF PLOS ONE V. 15 32311 2020 JRNL REFN ESSN 1932-6203 JRNL PMID 32915778 JRNL DOI 10.1371/JOURNAL.PONE.0232311 REMARK 2 REMARK 2 RESOLUTION. 2.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 27133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.304 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1420 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1919 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.4200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4641 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.537 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.365 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.369 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.147 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.912 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.866 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4838 ; 0.004 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6613 ; 1.242 ; 1.659 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 614 ; 7.692 ; 5.016 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 184 ;39.126 ;24.348 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 708 ;19.984 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;14.851 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 661 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3622 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6WGL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000248167. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28706 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.820 REMARK 200 RESOLUTION RANGE LOW (A) : 103.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 21.50 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 22.80 REMARK 200 R MERGE FOR SHELL (I) : 1.05500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6WG8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES PH 7.5, 25% PEG MME 550, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 206.22050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.74500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.74500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 309.33075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.74500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.74500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 103.11025 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.74500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.74500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 309.33075 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.74500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.74500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 103.11025 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 206.22050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 143 REMARK 465 SER A 144 REMARK 465 SER A 225 REMARK 465 LYS A 226 REMARK 465 TYR A 227 REMARK 465 GLY A 228 REMARK 465 HIS A 229 REMARK 465 HIS A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 465 CYS B 217 REMARK 465 THR C 108 REMARK 465 ASN C 109 REMARK 465 VAL C 110 REMARK 465 SER C 111 REMARK 465 TRP C 139 REMARK 465 SER C 140 REMARK 465 GLU C 141 REMARK 465 ASN C 142 REMARK 465 ASP C 143 REMARK 465 SER C 164 REMARK 465 THR C 165 REMARK 465 LEU C 166 REMARK 465 LYS C 167 REMARK 465 SER C 168 REMARK 465 GLY C 169 REMARK 465 ILE C 170 REMARK 465 SER C 171 REMARK 465 TYR C 172 REMARK 465 HIS C 197 REMARK 465 ASN C 198 REMARK 465 SER C 199 REMARK 465 TYR C 200 REMARK 465 ARG C 201 REMARK 465 GLU C 202 REMARK 465 PRO C 203 REMARK 465 PHE C 204 REMARK 465 GLU C 205 REMARK 465 GLN C 206 REMARK 465 HIS C 207 REMARK 465 GLY C 208 REMARK 465 GLY C 209 REMARK 465 GLY C 210 REMARK 465 GLY C 211 REMARK 465 SER C 212 REMARK 465 HIS C 213 REMARK 465 HIS C 214 REMARK 465 HIS C 215 REMARK 465 HIS C 216 REMARK 465 HIS C 217 REMARK 465 HIS C 218 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 1 CG CD OE1 OE2 REMARK 470 GLN A 13 CG CD OE1 NE2 REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 ARG A 87 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 105 CG1 CG2 CD1 REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 ARG A 141 CG CD NE CZ NH1 NH2 REMARK 470 SER A 142 OG REMARK 470 SER A 146 OG REMARK 470 THR A 203 OG1 CG2 REMARK 470 ARG A 222 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 83 CG1 CG2 REMARK 470 ARG B 147 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 152 CG CD OE1 NE2 REMARK 470 ASN B 157 CG OD1 ND2 REMARK 470 GLU B 170 CG CD OE1 OE2 REMARK 470 LYS B 174 CG CD CE NZ REMARK 470 LYS B 193 CG CD CE NZ REMARK 470 LYS B 195 CG CD CE NZ REMARK 470 VAL B 201 CG1 CG2 REMARK 470 GLU B 216 CG CD OE1 OE2 REMARK 470 GLU C 52 CG CD OE1 OE2 REMARK 470 VAL C 106 CG1 CG2 REMARK 470 HIS C 107 CG ND1 CD2 CE1 NE2 REMARK 470 ASP C 146 CG OD1 OD2 REMARK 470 ARG C 148 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 160 NE CZ NH1 NH2 REMARK 470 ARG C 173 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 175 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 195 CG CD CE NZ REMARK 470 TRP C 196 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 196 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 304 O HOH B 310 7645 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP C 112 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 27 -166.25 -166.06 REMARK 500 ARG A 67 -61.70 -90.88 REMARK 500 ASP A 99 -145.30 -93.49 REMARK 500 ASP A 156 77.76 61.54 REMARK 500 PRO A 159 -154.07 -89.14 REMARK 500 TYR B 31 -62.28 -95.30 REMARK 500 TYR B 37 75.77 -102.54 REMARK 500 SER B 57 19.89 -151.43 REMARK 500 SER B 70 147.13 -172.86 REMARK 500 ASN B 143 80.26 59.52 REMARK 500 ALA B 149 145.73 -175.73 REMARK 500 ASN B 157 -11.59 68.98 REMARK 500 GLU B 170 171.68 -58.95 REMARK 500 LYS B 195 -55.43 -123.55 REMARK 500 MET C 14 -50.90 -149.40 REMARK 500 SER C 15 -35.83 -140.87 REMARK 500 THR C 31 -40.31 -132.95 REMARK 500 VAL C 40 89.26 -65.50 REMARK 500 ASP C 66 44.95 -86.59 REMARK 500 ASP C 67 163.25 75.70 REMARK 500 ASN C 103 96.74 -67.15 REMARK 500 ALA C 145 -89.17 -164.35 REMARK 500 PHE C 147 -166.08 -122.21 REMARK 500 GLN C 181 71.64 -68.49 REMARK 500 TYR C 183 -71.02 -99.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 30 0.17 SIDE CHAIN REMARK 500 ARG A 100 0.08 SIDE CHAIN REMARK 500 ARG A 106 0.17 SIDE CHAIN REMARK 500 ARG B 59 0.10 SIDE CHAIN REMARK 500 ARG B 113 0.17 SIDE CHAIN REMARK 500 ARG C 99 0.15 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6WGB RELATED DB: PDB REMARK 900 RELATED ID: 6WG8 RELATED DB: PDB REMARK 900 RELATED ID: 6WGJ RELATED DB: PDB REMARK 900 RELATED ID: 6WGK RELATED DB: PDB DBREF 6WGL A 1 234 PDB 6WGL 6WGL 1 234 DBREF 6WGL B 1 217 PDB 6WGL 6WGL 1 217 DBREF 6WGL C 1 207 UNP P24394 IL4RA_HUMAN 26 232 SEQADV 6WGL LEU C 182 UNP P24394 CYS 207 CONFLICT SEQADV 6WGL GLY C 208 UNP P24394 EXPRESSION TAG SEQADV 6WGL GLY C 209 UNP P24394 EXPRESSION TAG SEQADV 6WGL GLY C 210 UNP P24394 EXPRESSION TAG SEQADV 6WGL GLY C 211 UNP P24394 EXPRESSION TAG SEQADV 6WGL SER C 212 UNP P24394 EXPRESSION TAG SEQADV 6WGL HIS C 213 UNP P24394 EXPRESSION TAG SEQADV 6WGL HIS C 214 UNP P24394 EXPRESSION TAG SEQADV 6WGL HIS C 215 UNP P24394 EXPRESSION TAG SEQADV 6WGL HIS C 216 UNP P24394 EXPRESSION TAG SEQADV 6WGL HIS C 217 UNP P24394 EXPRESSION TAG SEQADV 6WGL HIS C 218 UNP P24394 EXPRESSION TAG SEQRES 1 A 234 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU GLU GLN SEQRES 2 A 234 PRO GLY GLY SER LEU ARG LEU SER CYS ALA GLY SER GLY SEQRES 3 A 234 PHE THR PHE ARG ASP TYR ALA MET THR TRP VAL ARG GLN SEQRES 4 A 234 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER SER ILE SER SEQRES 5 A 234 GLY SER GLY GLY ASN THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 A 234 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 A 234 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 A 234 ALA VAL TYR TYR CYS ALA LYS ASP ARG LEU SER ILE THR SEQRES 9 A 234 ILE ARG PRO ARG TYR TYR GLY LEU ASP VAL TRP GLY GLN SEQRES 10 A 234 GLY THR THR VAL THR VAL SER SER ALA SER THR LYS GLY SEQRES 11 A 234 PRO SER VAL PHE PRO LEU ALA PRO CYS SER ARG SER THR SEQRES 12 A 234 SER GLU SER THR ALA ALA LEU GLY CYS LEU VAL LYS ASP SEQRES 13 A 234 TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SEQRES 14 A 234 ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 15 A 234 GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR SEQRES 16 A 234 VAL PRO SER SER SER LEU GLY THR LYS THR TYR THR CYS SEQRES 17 A 234 ASN VAL ASP HIS LYS PRO SER ASN THR LYS VAL ASP LYS SEQRES 18 A 234 ARG VAL GLU SER LYS TYR GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 217 ASP ILE VAL MET THR GLN SER PRO LEU SER LEU PRO VAL SEQRES 2 B 217 THR PRO GLY GLU PRO ALA SER ILE SER CYS ARG SER SER SEQRES 3 B 217 GLN SER LEU LEU TYR SER ILE GLY TYR ASN TYR LEU ASP SEQRES 4 B 217 TRP TYR LEU GLN LYS SER GLY GLN SER PRO GLN LEU LEU SEQRES 5 B 217 ILE TYR LEU GLY SER ASN ARG ALA SER GLY VAL PRO ASP SEQRES 6 B 217 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 B 217 LYS ILE SER ARG VAL GLU ALA GLU ASP VAL GLY PHE TYR SEQRES 8 B 217 TYR CYS MET GLN ALA LEU GLN THR PRO TYR THR PHE GLY SEQRES 9 B 217 GLN GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 B 217 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 B 217 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 B 217 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 B 217 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 B 217 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 B 217 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 B 217 VAL TYR ALA CYS GLU VAL THR GLN GLY THR THR SER VAL SEQRES 17 B 217 THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 C 218 MET LYS VAL LEU GLN GLU PRO THR CYS VAL SER ASP TYR SEQRES 2 C 218 MET SER ILE SER THR CYS GLU TRP LYS MET ASN GLY PRO SEQRES 3 C 218 THR ASN CYS SER THR GLU LEU ARG LEU LEU TYR GLN LEU SEQRES 4 C 218 VAL PHE LEU LEU SER GLU ALA HIS THR CYS ILE PRO GLU SEQRES 5 C 218 ASN ASN GLY GLY ALA GLY CYS VAL CYS HIS LEU LEU MET SEQRES 6 C 218 ASP ASP VAL VAL SER ALA ASP ASN TYR THR LEU ASP LEU SEQRES 7 C 218 TRP ALA GLY GLN GLN LEU LEU TRP LYS GLY SER PHE LYS SEQRES 8 C 218 PRO SER GLU HIS VAL LYS PRO ARG ALA PRO GLY ASN LEU SEQRES 9 C 218 THR VAL HIS THR ASN VAL SER ASP THR LEU LEU LEU THR SEQRES 10 C 218 TRP SER ASN PRO TYR PRO PRO ASP ASN TYR LEU TYR ASN SEQRES 11 C 218 HIS LEU THR TYR ALA VAL ASN ILE TRP SER GLU ASN ASP SEQRES 12 C 218 PRO ALA ASP PHE ARG ILE TYR ASN VAL THR TYR LEU GLU SEQRES 13 C 218 PRO SER LEU ARG ILE ALA ALA SER THR LEU LYS SER GLY SEQRES 14 C 218 ILE SER TYR ARG ALA ARG VAL ARG ALA TRP ALA GLN LEU SEQRES 15 C 218 TYR ASN THR THR TRP SER GLU TRP SER PRO SER THR LYS SEQRES 16 C 218 TRP HIS ASN SER TYR ARG GLU PRO PHE GLU GLN HIS GLY SEQRES 17 C 218 GLY GLY GLY SER HIS HIS HIS HIS HIS HIS HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET NAG C 301 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 5(C8 H15 N O6) FORMUL 7 HOH *26(H2 O) HELIX 1 AA1 THR A 28 ARG A 30 5 3 HELIX 2 AA2 ASP A 62 LYS A 65 5 4 HELIX 3 AA3 ARG A 87 THR A 91 5 5 HELIX 4 AA4 SER A 199 GLY A 202 5 4 HELIX 5 AA5 LYS A 213 ASN A 216 5 4 HELIX 6 AA6 GLU B 84 VAL B 88 5 5 HELIX 7 AA7 SER B 126 SER B 132 5 7 HELIX 8 AA8 LYS B 188 HIS B 194 1 7 HELIX 9 AA9 ASN C 28 GLU C 32 1 5 HELIX 10 AB1 LYS C 91 HIS C 95 5 5 HELIX 11 AB2 ASN C 126 ASN C 130 5 5 SHEET 1 AA1 4 GLN A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O ALA A 23 N VAL A 5 SHEET 3 AA1 4 THR A 78 MET A 83 -1 O MET A 83 N LEU A 18 SHEET 4 AA1 4 ILE A 70 ASP A 73 -1 N SER A 71 O TYR A 80 SHEET 1 AA2 6 LEU A 11 GLU A 12 0 SHEET 2 AA2 6 THR A 119 VAL A 123 1 O THR A 122 N GLU A 12 SHEET 3 AA2 6 ALA A 92 LEU A 101 -1 N TYR A 94 O THR A 119 SHEET 4 AA2 6 TYR A 32 GLN A 39 -1 N VAL A 37 O TYR A 95 SHEET 5 AA2 6 LEU A 45 ILE A 51 -1 O SER A 49 N TRP A 36 SHEET 6 AA2 6 THR A 58 TYR A 60 -1 O TYR A 59 N SER A 50 SHEET 1 AA3 4 SER A 132 LEU A 136 0 SHEET 2 AA3 4 THR A 147 TYR A 157 -1 O LEU A 153 N PHE A 134 SHEET 3 AA3 4 TYR A 188 PRO A 197 -1 O LEU A 190 N VAL A 154 SHEET 4 AA3 4 HIS A 176 THR A 177 -1 N HIS A 176 O VAL A 193 SHEET 1 AA4 4 SER A 132 LEU A 136 0 SHEET 2 AA4 4 THR A 147 TYR A 157 -1 O LEU A 153 N PHE A 134 SHEET 3 AA4 4 TYR A 188 PRO A 197 -1 O LEU A 190 N VAL A 154 SHEET 4 AA4 4 VAL A 181 LEU A 182 -1 N VAL A 181 O SER A 189 SHEET 1 AA5 3 THR A 163 TRP A 166 0 SHEET 2 AA5 3 THR A 207 HIS A 212 -1 O ASP A 211 N THR A 163 SHEET 3 AA5 3 THR A 217 ARG A 222 -1 O VAL A 219 N VAL A 210 SHEET 1 AA6 4 MET B 4 SER B 7 0 SHEET 2 AA6 4 ALA B 19 SER B 25 -1 O SER B 22 N SER B 7 SHEET 3 AA6 4 ASP B 75 ILE B 80 -1 O PHE B 76 N CYS B 23 SHEET 4 AA6 4 PHE B 67 SER B 72 -1 N SER B 68 O LYS B 79 SHEET 1 AA7 6 SER B 10 VAL B 13 0 SHEET 2 AA7 6 THR B 107 ILE B 111 1 O LYS B 108 N LEU B 11 SHEET 3 AA7 6 GLY B 89 GLN B 95 -1 N GLY B 89 O LEU B 109 SHEET 4 AA7 6 LEU B 38 GLN B 43 -1 N TYR B 41 O TYR B 92 SHEET 5 AA7 6 GLN B 50 TYR B 54 -1 O LEU B 52 N TRP B 40 SHEET 6 AA7 6 ASN B 58 ARG B 59 -1 O ASN B 58 N TYR B 54 SHEET 1 AA8 4 SER B 10 VAL B 13 0 SHEET 2 AA8 4 THR B 107 ILE B 111 1 O LYS B 108 N LEU B 11 SHEET 3 AA8 4 GLY B 89 GLN B 95 -1 N GLY B 89 O LEU B 109 SHEET 4 AA8 4 THR B 102 PHE B 103 -1 O THR B 102 N GLN B 95 SHEET 1 AA9 2 LEU B 30 SER B 32 0 SHEET 2 AA9 2 TYR B 35 ASN B 36 -1 O TYR B 35 N TYR B 31 SHEET 1 AB1 4 SER B 119 PHE B 123 0 SHEET 2 AB1 4 THR B 134 PHE B 144 -1 O ASN B 142 N SER B 119 SHEET 3 AB1 4 TYR B 178 SER B 187 -1 O LEU B 184 N VAL B 137 SHEET 4 AB1 4 SER B 164 VAL B 168 -1 N GLN B 165 O THR B 183 SHEET 1 AB2 4 ALA B 158 LEU B 159 0 SHEET 2 AB2 4 LYS B 150 VAL B 155 -1 N VAL B 155 O ALA B 158 SHEET 3 AB2 4 VAL B 196 GLN B 203 -1 O ALA B 198 N LYS B 154 SHEET 4 AB2 4 THR B 206 ASN B 213 -1 O VAL B 208 N VAL B 201 SHEET 1 AB3 4 LYS C 2 SER C 11 0 SHEET 2 AB3 4 ILE C 16 ASN C 24 -1 O ASN C 24 N LYS C 2 SHEET 3 AB3 4 GLY C 58 LEU C 64 -1 O CYS C 59 N TRP C 21 SHEET 4 AB3 4 GLU C 52 ASN C 53 -1 N GLU C 52 O VAL C 60 SHEET 1 AB4 4 HIS C 47 CYS C 49 0 SHEET 2 AB4 4 LEU C 33 LEU C 39 -1 N TYR C 37 O HIS C 47 SHEET 3 AB4 4 TYR C 74 ALA C 80 -1 O TRP C 79 N ARG C 34 SHEET 4 AB4 4 GLN C 83 PHE C 90 -1 O PHE C 90 N TYR C 74 SHEET 1 AB5 2 LEU C 116 THR C 117 0 SHEET 2 AB5 2 SER C 158 LEU C 159 -1 O LEU C 159 N LEU C 116 SHEET 1 AB6 3 ILE C 149 VAL C 152 0 SHEET 2 AB6 3 LEU C 132 ASN C 137 -1 N TYR C 134 O VAL C 152 SHEET 3 AB6 3 ARG C 175 ALA C 180 -1 O TRP C 179 N THR C 133 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.76 SSBOND 2 CYS A 152 CYS A 208 1555 1555 2.07 SSBOND 3 CYS B 23 CYS B 93 1555 1555 2.92 SSBOND 4 CYS B 139 CYS B 199 1555 1555 2.05 SSBOND 5 CYS C 9 CYS C 19 1555 1555 2.04 SSBOND 6 CYS C 29 CYS C 59 1555 1555 2.05 LINK ND2 ASN C 28 C1 NAG D 1 1555 1555 1.43 LINK ND2 ASN C 73 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN C 184 C1 NAG C 301 1555 1555 1.46 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.46 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.46 CISPEP 1 PHE A 158 PRO A 159 0 -6.32 CISPEP 2 GLU A 160 PRO A 161 0 12.69 CISPEP 3 SER B 7 PRO B 8 0 3.07 CISPEP 4 THR B 99 PRO B 100 0 -7.17 CISPEP 5 TYR B 145 PRO B 146 0 11.91 CRYST1 73.490 73.490 412.441 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013607 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013607 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002425 0.00000