HEADER TRANSFERASE 07-APR-20 6WH5 TITLE MYCOBACTERIUM TUBERCULOSIS PDUO-TYPE ATP:COBALAMIN ADENOSYLTRANSFERASE TITLE 2 BOUND TO COB(II)ALAMIN AND PPPI COMPND MOL_ID: 1; COMPND 2 MOLECULE: CORRINOID ADENOSYLTRANSFERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 2.5.1.17; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: E5M05_13560, ERS023446_03354, ERS027651_01619, FCN16_21305, SOURCE 5 SAMEA2682864_01680, SAMEA2683035_01578; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CHAPERONE, B12 TRAFFICKING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.N.MASCARENHAS,M.RUETZ,M.KOUTMOS,R.BANERJEE REVDAT 2 18-OCT-23 6WH5 1 REMARK REVDAT 1 20-JAN-21 6WH5 0 JRNL AUTH R.MASCARENHAS,M.RUETZ,L.MCDEVITT,M.KOUTMOS,R.BANERJEE JRNL TITL MOBILE LOOP DYNAMICS IN ADENOSYLTRANSFERASE CONTROL BINDING JRNL TITL 2 AND REACTIVITY OF COENZYME B 12 . JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 30412 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 33199623 JRNL DOI 10.1073/PNAS.2007332117 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 46298 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 2372 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8060 - 4.7962 0.99 2889 133 0.1808 0.2497 REMARK 3 2 4.7962 - 3.8078 0.98 2803 162 0.1484 0.1767 REMARK 3 3 3.8078 - 3.3268 1.00 2791 161 0.1709 0.2385 REMARK 3 4 3.3268 - 3.0227 1.00 2800 161 0.1754 0.1913 REMARK 3 5 3.0227 - 2.8061 1.00 2822 159 0.1782 0.2165 REMARK 3 6 2.8061 - 2.6407 0.99 2786 126 0.1826 0.2107 REMARK 3 7 2.6407 - 2.5085 0.97 2702 136 0.1681 0.2296 REMARK 3 8 2.5085 - 2.3993 0.98 2777 146 0.1686 0.2241 REMARK 3 9 2.3993 - 2.3069 0.99 2767 157 0.1695 0.1937 REMARK 3 10 2.3069 - 2.2273 0.53 1498 81 0.1997 0.2081 REMARK 3 11 2.2273 - 2.1577 0.98 2738 145 0.1733 0.2041 REMARK 3 12 2.1577 - 2.0960 0.99 2756 146 0.1809 0.2007 REMARK 3 13 2.0960 - 2.0409 0.35 972 63 0.2841 0.3551 REMARK 3 14 2.0409 - 1.9911 0.99 2766 166 0.1950 0.2186 REMARK 3 15 1.9911 - 1.9458 0.99 2736 155 0.1924 0.2461 REMARK 3 16 1.9458 - 1.9044 0.98 2767 135 0.2259 0.2428 REMARK 3 17 1.9044 - 1.8663 0.91 2556 140 0.2686 0.3298 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 11.1190 -14.9474 22.6985 REMARK 3 T TENSOR REMARK 3 T11: 0.1545 T22: 0.1486 REMARK 3 T33: 0.1427 T12: 0.0010 REMARK 3 T13: -0.0033 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.9240 L22: 1.1293 REMARK 3 L33: 1.1919 L12: 0.0057 REMARK 3 L13: 0.1831 L23: 0.0337 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: 0.0330 S13: 0.0068 REMARK 3 S21: -0.0498 S22: -0.0028 S23: -0.0522 REMARK 3 S31: 0.0069 S32: 0.0330 S33: -0.0019 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 3 THROUGH 20 OR RESID REMARK 3 22 OR RESID 24 THROUGH 56 OR RESID 58 REMARK 3 THROUGH 82 OR (RESID 83 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 84 THROUGH 85 OR (RESID 86 REMARK 3 THROUGH 87 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 88 REMARK 3 THROUGH 159 OR (RESID 160 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 161 THROUGH 188)) REMARK 3 SELECTION : (CHAIN B AND (RESID 3 THROUGH 20 OR RESID REMARK 3 22 OR RESID 24 THROUGH 56 OR RESID 58 REMARK 3 THROUGH 82 OR (RESID 83 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 84 THROUGH 188)) REMARK 3 ATOM PAIRS NUMBER : 1653 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 3 THROUGH 20 OR RESID REMARK 3 22 OR RESID 24 THROUGH 56 OR RESID 58 REMARK 3 THROUGH 82 OR (RESID 83 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 84 THROUGH 85 OR (RESID 86 REMARK 3 THROUGH 87 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 88 REMARK 3 THROUGH 159 OR (RESID 160 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 161 THROUGH 188)) REMARK 3 SELECTION : (CHAIN C AND (RESID 3 THROUGH 20 OR RESID REMARK 3 22 OR RESID 24 THROUGH 56 OR RESID 58 REMARK 3 THROUGH 85 OR (RESID 86 THROUGH 87 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 88 THROUGH 159 OR REMARK 3 (RESID 160 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 161 REMARK 3 THROUGH 188)) REMARK 3 ATOM PAIRS NUMBER : 1653 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WH5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000248206. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.127 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46346 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.866 REMARK 200 RESOLUTION RANGE LOW (A) : 54.156 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.74500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2G2D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 3350, 0.1 M BIS TRIS PH 6.5, REMARK 280 5% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.21400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.33900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.21400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.33900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -127.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 189 REMARK 465 ARG A 190 REMARK 465 THR A 191 REMARK 465 ALA A 192 REMARK 465 SER A 193 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 189 REMARK 465 ARG B 190 REMARK 465 THR B 191 REMARK 465 ALA B 192 REMARK 465 SER B 193 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 ASP C 189 REMARK 465 ARG C 190 REMARK 465 THR C 191 REMARK 465 ALA C 192 REMARK 465 SER C 193 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 86 CG CD CE NZ REMARK 470 HIS B 87 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 160 CG CD CE NZ REMARK 470 GLU C 83 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 58 OH TYR A 107 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 6 -90.50 -123.04 REMARK 500 ILE A 8 -61.81 74.62 REMARK 500 MET A 23 -1.96 73.17 REMARK 500 THR B 6 -91.31 -122.23 REMARK 500 ILE B 8 -62.24 74.61 REMARK 500 MET B 23 -12.44 81.61 REMARK 500 ASN B 177 74.13 -119.55 REMARK 500 THR C 6 -90.28 -123.40 REMARK 500 ILE C 8 -62.46 75.18 REMARK 500 MET C 23 -6.20 78.71 REMARK 500 MET C 23 -2.80 75.89 REMARK 500 ASN C 177 72.19 -117.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 362 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH B 366 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH C 378 DISTANCE = 6.43 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 201 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 8 O REMARK 620 2 3PO A 203 O1G 135.3 REMARK 620 3 3PO A 203 O3G 91.7 51.3 REMARK 620 4 3PO A 203 O1A 114.4 95.5 95.6 REMARK 620 5 3PO A 203 O5' 160.7 63.5 101.8 51.1 REMARK 620 6 ASP B 167 OD1 96.7 97.2 137.3 118.1 82.7 REMARK 620 7 ASP B 167 OD2 79.4 80.2 95.2 162.2 112.5 46.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 163 OD1 REMARK 620 2 HOH A 317 O 87.9 REMARK 620 3 HOH A 326 O 82.9 90.4 REMARK 620 4 3PO C 203 O1B 95.3 171.6 82.4 REMARK 620 5 3PO C 203 O1A 92.1 91.9 174.4 95.7 REMARK 620 6 3PO C 203 O2G 168.5 87.7 86.6 87.7 98.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 201 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 167 OD1 REMARK 620 2 ASP A 167 OD2 45.0 REMARK 620 3 ILE C 8 O 94.9 79.7 REMARK 620 4 3PO C 203 O1A 97.0 77.0 132.4 REMARK 620 5 3PO C 203 O1G 120.0 161.6 115.7 97.3 REMARK 620 6 3PO C 203 O2G 86.8 111.9 164.0 62.8 51.0 REMARK 620 7 3PO C 203 O5' 139.3 96.6 88.9 53.9 93.9 100.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 3PO A 203 O1G REMARK 620 2 3PO A 203 O1B 83.0 REMARK 620 3 3PO A 203 O5' 96.7 100.8 REMARK 620 4 ASN B 163 OD1 89.8 88.6 169.1 REMARK 620 5 HOH B 317 O 90.1 172.8 82.3 89.0 REMARK 620 6 HOH B 329 O 167.4 88.0 93.6 81.2 98.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 201 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B 8 O REMARK 620 2 3PO B 203 O1G 114.8 REMARK 620 3 3PO B 203 O3G 164.5 51.2 REMARK 620 4 3PO B 203 O1A 131.3 96.7 62.2 REMARK 620 5 3PO B 203 O5' 86.3 94.2 100.3 53.7 REMARK 620 6 ASP C 167 OD1 95.9 122.1 88.6 97.5 137.7 REMARK 620 7 ASP C 167 OD2 78.1 165.2 115.1 78.4 93.9 46.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 3PO B 203 O3G REMARK 620 2 3PO B 203 O1B 88.9 REMARK 620 3 3PO B 203 O1A 95.2 91.8 REMARK 620 4 ASN C 163 OD1 171.0 97.2 91.2 REMARK 620 5 HOH C 307 O 91.3 179.1 89.1 82.6 REMARK 620 6 HOH C 326 O 89.7 86.1 174.6 84.2 93.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3PO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue B12 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3PO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3PO C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue B12 C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue B12 C 205 DBREF1 6WH5 A 1 193 UNP A0A045JVI3_MYCTX DBREF2 6WH5 A A0A045JVI3 1 193 DBREF1 6WH5 B 1 193 UNP A0A045JVI3_MYCTX DBREF2 6WH5 B A0A045JVI3 1 193 DBREF1 6WH5 C 1 193 UNP A0A045JVI3_MYCTX DBREF2 6WH5 C A0A045JVI3 1 193 SEQADV 6WH5 GLY A -2 UNP A0A045JVI EXPRESSION TAG SEQADV 6WH5 SER A -1 UNP A0A045JVI EXPRESSION TAG SEQADV 6WH5 HIS A 0 UNP A0A045JVI EXPRESSION TAG SEQADV 6WH5 GLY B -2 UNP A0A045JVI EXPRESSION TAG SEQADV 6WH5 SER B -1 UNP A0A045JVI EXPRESSION TAG SEQADV 6WH5 HIS B 0 UNP A0A045JVI EXPRESSION TAG SEQADV 6WH5 GLY C -2 UNP A0A045JVI EXPRESSION TAG SEQADV 6WH5 SER C -1 UNP A0A045JVI EXPRESSION TAG SEQADV 6WH5 HIS C 0 UNP A0A045JVI EXPRESSION TAG SEQRES 1 A 196 GLY SER HIS MET ALA VAL HIS LEU THR ARG ILE TYR THR SEQRES 2 A 196 ARG THR GLY ASP ASP GLY THR THR GLY LEU SER ASP MET SEQRES 3 A 196 SER ARG VAL ALA LYS THR ASP ALA ARG LEU VAL ALA TYR SEQRES 4 A 196 ALA ASP CYS ASP GLU ALA ASN ALA ALA ILE GLY ALA ALA SEQRES 5 A 196 LEU ALA LEU GLY HIS PRO ASP THR GLN ILE THR ASP VAL SEQRES 6 A 196 LEU ARG GLN ILE GLN ASN ASP LEU PHE ASP ALA GLY ALA SEQRES 7 A 196 ASP LEU SER THR PRO ILE VAL GLU ASN PRO LYS HIS PRO SEQRES 8 A 196 PRO LEU ARG ILE ALA GLN SER TYR ILE ASP ARG LEU GLU SEQRES 9 A 196 GLY TRP CYS ASP ALA TYR ASN ALA GLY LEU PRO ALA LEU SEQRES 10 A 196 LYS SER PHE VAL LEU PRO GLY GLY SER PRO LEU SER ALA SEQRES 11 A 196 LEU LEU HIS VAL ALA ARG THR VAL VAL ARG ARG ALA GLU SEQRES 12 A 196 ARG SER ALA TRP ALA ALA VAL ASP ALA HIS PRO GLU GLY SEQRES 13 A 196 VAL SER VAL LEU PRO ALA LYS TYR LEU ASN ARG LEU SER SEQRES 14 A 196 ASP LEU LEU PHE ILE LEU SER ARG VAL ALA ASN PRO ASP SEQRES 15 A 196 GLY ASP VAL LEU TRP ARG PRO GLY GLY ASP ARG THR ALA SEQRES 16 A 196 SER SEQRES 1 B 196 GLY SER HIS MET ALA VAL HIS LEU THR ARG ILE TYR THR SEQRES 2 B 196 ARG THR GLY ASP ASP GLY THR THR GLY LEU SER ASP MET SEQRES 3 B 196 SER ARG VAL ALA LYS THR ASP ALA ARG LEU VAL ALA TYR SEQRES 4 B 196 ALA ASP CYS ASP GLU ALA ASN ALA ALA ILE GLY ALA ALA SEQRES 5 B 196 LEU ALA LEU GLY HIS PRO ASP THR GLN ILE THR ASP VAL SEQRES 6 B 196 LEU ARG GLN ILE GLN ASN ASP LEU PHE ASP ALA GLY ALA SEQRES 7 B 196 ASP LEU SER THR PRO ILE VAL GLU ASN PRO LYS HIS PRO SEQRES 8 B 196 PRO LEU ARG ILE ALA GLN SER TYR ILE ASP ARG LEU GLU SEQRES 9 B 196 GLY TRP CYS ASP ALA TYR ASN ALA GLY LEU PRO ALA LEU SEQRES 10 B 196 LYS SER PHE VAL LEU PRO GLY GLY SER PRO LEU SER ALA SEQRES 11 B 196 LEU LEU HIS VAL ALA ARG THR VAL VAL ARG ARG ALA GLU SEQRES 12 B 196 ARG SER ALA TRP ALA ALA VAL ASP ALA HIS PRO GLU GLY SEQRES 13 B 196 VAL SER VAL LEU PRO ALA LYS TYR LEU ASN ARG LEU SER SEQRES 14 B 196 ASP LEU LEU PHE ILE LEU SER ARG VAL ALA ASN PRO ASP SEQRES 15 B 196 GLY ASP VAL LEU TRP ARG PRO GLY GLY ASP ARG THR ALA SEQRES 16 B 196 SER SEQRES 1 C 196 GLY SER HIS MET ALA VAL HIS LEU THR ARG ILE TYR THR SEQRES 2 C 196 ARG THR GLY ASP ASP GLY THR THR GLY LEU SER ASP MET SEQRES 3 C 196 SER ARG VAL ALA LYS THR ASP ALA ARG LEU VAL ALA TYR SEQRES 4 C 196 ALA ASP CYS ASP GLU ALA ASN ALA ALA ILE GLY ALA ALA SEQRES 5 C 196 LEU ALA LEU GLY HIS PRO ASP THR GLN ILE THR ASP VAL SEQRES 6 C 196 LEU ARG GLN ILE GLN ASN ASP LEU PHE ASP ALA GLY ALA SEQRES 7 C 196 ASP LEU SER THR PRO ILE VAL GLU ASN PRO LYS HIS PRO SEQRES 8 C 196 PRO LEU ARG ILE ALA GLN SER TYR ILE ASP ARG LEU GLU SEQRES 9 C 196 GLY TRP CYS ASP ALA TYR ASN ALA GLY LEU PRO ALA LEU SEQRES 10 C 196 LYS SER PHE VAL LEU PRO GLY GLY SER PRO LEU SER ALA SEQRES 11 C 196 LEU LEU HIS VAL ALA ARG THR VAL VAL ARG ARG ALA GLU SEQRES 12 C 196 ARG SER ALA TRP ALA ALA VAL ASP ALA HIS PRO GLU GLY SEQRES 13 C 196 VAL SER VAL LEU PRO ALA LYS TYR LEU ASN ARG LEU SER SEQRES 14 C 196 ASP LEU LEU PHE ILE LEU SER ARG VAL ALA ASN PRO ASP SEQRES 15 C 196 GLY ASP VAL LEU TRP ARG PRO GLY GLY ASP ARG THR ALA SEQRES 16 C 196 SER HET K A 201 1 HET MG A 202 1 HET 3PO A 203 13 HET B12 A 204 180 HET K B 201 1 HET MG B 202 1 HET 3PO B 203 13 HET K C 201 1 HET MG C 202 1 HET 3PO C 203 13 HET B12 C 204 180 HET B12 C 205 180 HETNAM K POTASSIUM ION HETNAM MG MAGNESIUM ION HETNAM 3PO TRIPHOSPHATE HETNAM B12 COBALAMIN FORMUL 4 K 3(K 1+) FORMUL 5 MG 3(MG 2+) FORMUL 6 3PO 3(H5 O10 P3) FORMUL 7 B12 3(C62 H89 CO N13 O14 P 2+) FORMUL 16 HOH *206(H2 O) HELIX 1 AA1 ASP A 30 HIS A 54 1 25 HELIX 2 AA2 ASP A 56 THR A 79 1 24 HELIX 3 AA3 ALA A 93 ALA A 109 1 17 HELIX 4 AA4 SER A 123 HIS A 150 1 28 HELIX 5 AA5 VAL A 156 ALA A 176 1 21 HELIX 6 AA6 ASP B 30 HIS B 54 1 25 HELIX 7 AA7 ASP B 56 THR B 79 1 24 HELIX 8 AA8 ALA B 93 ALA B 109 1 17 HELIX 9 AA9 SER B 123 HIS B 150 1 28 HELIX 10 AB1 VAL B 156 ALA B 176 1 21 HELIX 11 AB2 ASP C 30 HIS C 54 1 25 HELIX 12 AB3 ASP C 56 SER C 78 1 23 HELIX 13 AB4 ALA C 93 ALA C 109 1 17 HELIX 14 AB5 SER C 123 HIS C 150 1 28 HELIX 15 AB6 VAL C 156 ALA C 176 1 21 SHEET 1 AA1 2 THR A 17 GLY A 19 0 SHEET 2 AA1 2 ARG A 25 ALA A 27 -1 O VAL A 26 N THR A 18 SHEET 1 AA2 2 VAL A 118 LEU A 119 0 SHEET 2 AA2 2 VAL A 182 LEU A 183 -1 O VAL A 182 N LEU A 119 SHEET 1 AA3 2 THR B 17 GLY B 19 0 SHEET 2 AA3 2 ARG B 25 ALA B 27 -1 O VAL B 26 N THR B 18 SHEET 1 AA4 2 THR C 17 GLY C 19 0 SHEET 2 AA4 2 ARG C 25 ALA C 27 -1 O VAL C 26 N THR C 18 SHEET 1 AA5 2 VAL C 118 LEU C 119 0 SHEET 2 AA5 2 VAL C 182 LEU C 183 -1 O VAL C 182 N LEU C 119 LINK O ILE A 8 K K B 201 1555 1555 2.69 LINK OD1 ASN A 163 MG MG A 202 1555 1555 2.07 LINK OD1 ASP A 167 K K A 201 1555 1555 2.91 LINK OD2 ASP A 167 K K A 201 1555 1555 2.84 LINK K K A 201 O ILE C 8 1555 1555 2.72 LINK K K A 201 O1A 3PO C 203 1555 1555 2.74 LINK K K A 201 O1G 3PO C 203 1555 1555 2.66 LINK K K A 201 O2G 3PO C 203 1555 1555 3.23 LINK K K A 201 O5' 3PO C 203 1555 1555 2.96 LINK MG MG A 202 O HOH A 317 1555 1555 2.16 LINK MG MG A 202 O HOH A 326 1555 1555 2.11 LINK MG MG A 202 O1B 3PO C 203 1555 1555 2.32 LINK MG MG A 202 O1A 3PO C 203 1555 1555 2.12 LINK MG MG A 202 O2G 3PO C 203 1555 1555 2.02 LINK O1G 3PO A 203 K K B 201 1555 1555 2.78 LINK O3G 3PO A 203 K K B 201 1555 1555 3.12 LINK O1A 3PO A 203 K K B 201 1555 1555 2.77 LINK O5' 3PO A 203 K K B 201 1555 1555 3.08 LINK O1G 3PO A 203 MG MG B 202 1555 1555 2.06 LINK O1B 3PO A 203 MG MG B 202 1555 1555 2.31 LINK O5' 3PO A 203 MG MG B 202 1555 1555 2.08 LINK O ILE B 8 K K C 201 1555 1555 2.70 LINK OD1 ASN B 163 MG MG B 202 1555 1555 2.11 LINK OD1 ASP B 167 K K B 201 1555 1555 2.82 LINK OD2 ASP B 167 K K B 201 1555 1555 2.76 LINK MG MG B 202 O HOH B 317 1555 1555 2.20 LINK MG MG B 202 O HOH B 329 1555 1555 2.12 LINK O1G 3PO B 203 K K C 201 1555 1555 2.76 LINK O3G 3PO B 203 K K C 201 1555 1555 3.15 LINK O1A 3PO B 203 K K C 201 1555 1555 2.74 LINK O5' 3PO B 203 K K C 201 1555 1555 2.95 LINK O3G 3PO B 203 MG MG C 202 1555 1555 2.05 LINK O1B 3PO B 203 MG MG C 202 1555 1555 2.23 LINK O1A 3PO B 203 MG MG C 202 1555 1555 2.10 LINK OD1 ASN C 163 MG MG C 202 1555 1555 2.07 LINK OD1 ASP C 167 K K C 201 1555 1555 2.82 LINK OD2 ASP C 167 K K C 201 1555 1555 2.80 LINK MG MG C 202 O HOH C 307 1555 1555 2.10 LINK MG MG C 202 O HOH C 326 1555 1555 2.12 SITE 1 AC1 4 ASP A 167 ILE C 8 3PO C 203 B12 C 205 SITE 1 AC2 4 ASN A 163 HOH A 317 HOH A 326 3PO C 203 SITE 1 AC3 19 THR A 10 ARG A 11 THR A 12 GLY A 13 SITE 2 AC3 19 THR A 17 THR A 18 LYS A 28 B12 A 204 SITE 3 AC3 19 HOH A 303 HOH A 307 HOH A 324 ARG B 137 SITE 4 AC3 19 ASN B 163 ASP B 167 K B 201 MG B 202 SITE 5 AC3 19 HOH B 307 HOH B 317 HOH B 329 SITE 1 AC4 28 VAL A 3 HIS A 4 LEU A 5 THR A 6 SITE 2 AC4 28 ARG A 7 ILE A 8 GLY A 19 SER A 21 SITE 3 AC4 28 MET A 23 TYR A 36 PHE A 71 GLY A 74 SITE 4 AC4 28 ALA A 75 SER A 78 PRO A 88 PRO A 89 SITE 5 AC4 28 LEU A 90 3PO A 203 HOH A 337 ARG B 7 SITE 6 AC4 28 PHE B 117 VAL B 118 ARG B 133 ARG B 137 SITE 7 AC4 28 SER B 166 ASP B 167 PHE B 170 K B 201 SITE 1 AC5 4 ILE A 8 3PO A 203 B12 A 204 ASP B 167 SITE 1 AC6 4 3PO A 203 ASN B 163 HOH B 317 HOH B 329 SITE 1 AC7 18 THR B 10 ARG B 11 THR B 12 GLY B 13 SITE 2 AC7 18 THR B 18 LYS B 28 HOH B 305 HOH B 330 SITE 3 AC7 18 HOH B 336 ARG C 137 ASN C 163 ASP C 167 SITE 4 AC7 18 K C 201 MG C 202 B12 C 204 HOH C 307 SITE 5 AC7 18 HOH C 309 HOH C 326 SITE 1 AC8 4 ILE B 8 3PO B 203 ASP C 167 B12 C 204 SITE 1 AC9 4 3PO B 203 ASN C 163 HOH C 307 HOH C 326 SITE 1 AD1 19 ARG A 137 ASN A 163 ASP A 167 K A 201 SITE 2 AD1 19 MG A 202 HOH A 310 HOH A 317 HOH A 326 SITE 3 AD1 19 THR C 10 ARG C 11 THR C 12 GLY C 13 SITE 4 AD1 19 THR C 17 THR C 18 LYS C 28 B12 C 205 SITE 5 AD1 19 HOH C 310 HOH C 313 HOH C 319 SITE 1 AD2 30 HIS B 4 LEU B 5 THR B 6 ARG B 7 SITE 2 AD2 30 ILE B 8 GLY B 19 SER B 21 MET B 23 SITE 3 AD2 30 TYR B 36 PHE B 71 GLY B 74 ALA B 75 SITE 4 AD2 30 SER B 78 THR B 79 PRO B 88 PRO B 89 SITE 5 AD2 30 LEU B 90 3PO B 203 HOH B 330 ARG C 7 SITE 6 AD2 30 PHE C 117 VAL C 118 ARG C 133 ARG C 137 SITE 7 AD2 30 SER C 166 ASP C 167 PHE C 170 K C 201 SITE 8 AD2 30 HOH C 301 HOH C 349 SITE 1 AD3 31 ARG A 7 PHE A 117 VAL A 118 ARG A 133 SITE 2 AD3 31 ARG A 137 SER A 166 ASP A 167 PHE A 170 SITE 3 AD3 31 TRP A 184 K A 201 VAL C 3 HIS C 4 SITE 4 AD3 31 LEU C 5 THR C 6 ARG C 7 ILE C 8 SITE 5 AD3 31 GLY C 19 SER C 21 MET C 23 TYR C 36 SITE 6 AD3 31 PHE C 71 GLY C 74 ALA C 75 SER C 78 SITE 7 AD3 31 THR C 79 PRO C 88 PRO C 89 LEU C 90 SITE 8 AD3 31 3PO C 203 HOH C 362 HOH C 364 CRYST1 108.428 62.678 103.071 90.00 119.04 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009223 0.000000 0.005121 0.00000 SCALE2 0.000000 0.015955 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011098 0.00000