HEADER PROTEIN BINDING 08-APR-20 6WHH OBSLTE 27-MAR-24 6WHH 8W3V TITLE CRYSTAL STRUCTURE OF HUMAN WDR41 COMPND MOL_ID: 1; COMPND 2 MOLECULE: WD REPEAT-CONTAINING PROTEIN 41; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 30-440; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WDR41, MSTP048; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS WDR41, WD-REPEAT, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.HUTCHINSON,L.HALABELIAN,Y.LI,A.SEITOVA,C.BOUNTRA,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 27-MAR-24 6WHH 1 OBSLTE REVDAT 4 18-OCT-23 6WHH 1 REMARK REVDAT 3 24-JUN-20 6WHH 1 AUTHOR JRNL REVDAT 2 20-MAY-20 6WHH 1 COMPND SOURCE REMARK DBREF REVDAT 2 2 1 SEQADV SEQRES SHEET ATOM REVDAT 1 13-MAY-20 6WHH 0 JRNL AUTH A.HUTCHINSON,L.HALABELIAN,Y.LI,A.SEITOVA,C.BOUNTRA, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF HUMAN WDR41 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 10574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 537 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 26 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.75 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.85 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 407 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2412 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 384 REMARK 3 BIN R VALUE (WORKING SET) : 0.2376 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.65 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 23 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2305 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 107.3 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 105.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.99140 REMARK 3 B22 (A**2) : 1.99140 REMARK 3 B33 (A**2) : -3.98270 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.370 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.739 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.308 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.727 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.312 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2344 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3210 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 710 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 400 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2344 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 344 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2439 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.37 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.51 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.89 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 52.0264 26.2932 54.3648 REMARK 3 T TENSOR REMARK 3 T11: -0.2314 T22: -0.1285 REMARK 3 T33: -0.3455 T12: 0.3040 REMARK 3 T13: 0.0393 T23: -0.0509 REMARK 3 L TENSOR REMARK 3 L11: 1.1534 L22: 8.2948 REMARK 3 L33: 2.7563 L12: -0.3292 REMARK 3 L13: 0.2818 L23: -1.0541 REMARK 3 S TENSOR REMARK 3 S11: 0.2478 S12: -0.0773 S13: -0.1932 REMARK 3 S21: -1.0675 S22: -0.5654 S23: -0.4612 REMARK 3 S31: 0.4318 S32: 0.7043 S33: 0.3175 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WHH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000248099. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : CRYOGENICALLY-COOLED SINGLE REMARK 200 CRYSTAL SI(220) SIDE BOUNCE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10587 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.710 REMARK 200 RESOLUTION RANGE LOW (A) : 43.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 13.50 REMARK 200 R MERGE FOR SHELL (I) : 1.09500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: PDB ENTRY 6G6M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 33% PEG5000 MME, 0.2 M AMMONIUM REMARK 280 SULFATE, 0.1 M MES, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 51.77000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 51.77000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.30500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.77000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.65250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.77000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 103.95750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.77000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 103.95750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.77000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.65250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 51.77000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 51.77000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.30500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 51.77000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 51.77000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 69.30500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 51.77000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 103.95750 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 51.77000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 34.65250 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.77000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 34.65250 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 51.77000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 103.95750 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 51.77000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 51.77000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 69.30500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 29 REMARK 465 GLN A 30 REMARK 465 SER A 95 REMARK 465 LEU A 96 REMARK 465 GLU A 97 REMARK 465 SER A 98 REMARK 465 CYS A 99 REMARK 465 GLU A 100 REMARK 465 GLU A 101 REMARK 465 LYS A 102 REMARK 465 ASN A 103 REMARK 465 ASP A 121 REMARK 465 THR A 122 REMARK 465 THR A 123 REMARK 465 TRP A 263 REMARK 465 ASP A 264 REMARK 465 PRO A 265 REMARK 465 SER A 266 REMARK 465 PRO A 267 REMARK 465 GLN A 268 REMARK 465 LEU A 269 REMARK 465 ASP A 270 REMARK 465 THR A 271 REMARK 465 GLN A 272 REMARK 465 GLN A 273 REMARK 465 GLU A 274 REMARK 465 ILE A 275 REMARK 465 LYS A 276 REMARK 465 LEU A 277 REMARK 465 CYS A 278 REMARK 465 GLN A 279 REMARK 465 LYS A 280 REMARK 465 SER A 281 REMARK 465 ASN A 282 REMARK 465 ASP A 283 REMARK 465 GLY A 434 REMARK 465 GLU A 435 REMARK 465 ARG A 436 REMARK 465 GLU A 437 REMARK 465 SER A 438 REMARK 465 GLY A 439 REMARK 465 LEU A 440 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 31 CG OD1 ND2 REMARK 470 PRO A 32 CB CG CD REMARK 470 TYR A 33 CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 LEU A 36 CD1 CD2 REMARK 470 LEU A 37 CG CD1 CD2 REMARK 470 LYS A 40 CG CD CE NZ REMARK 470 ILE A 45 CG1 CG2 CD1 REMARK 470 ASP A 54 CG OD1 OD2 REMARK 470 TYR A 55 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 56 CG CD NE CZ NH1 NH2 REMARK 470 SER A 59 OG REMARK 470 ASP A 62 CG OD1 OD2 REMARK 470 ILE A 65 CG1 CG2 CD1 REMARK 470 VAL A 66 CG1 CG2 REMARK 470 ASN A 70 CG OD1 ND2 REMARK 470 GLN A 72 CG CD OE1 NE2 REMARK 470 THR A 73 OG1 CG2 REMARK 470 GLU A 75 CG CD OE1 OE2 REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 LEU A 77 CG CD1 CD2 REMARK 470 LEU A 78 CG CD1 CD2 REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 LEU A 80 CG CD1 CD2 REMARK 470 ASN A 81 CG OD1 ND2 REMARK 470 THR A 84 OG1 CG2 REMARK 470 GLN A 85 CG CD OE1 NE2 REMARK 470 LYS A 86 CG CD CE NZ REMARK 470 PHE A 93 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 104 CG CD OE1 NE2 REMARK 470 LEU A 105 CD1 CD2 REMARK 470 ILE A 106 CG1 CG2 CD1 REMARK 470 ARG A 113 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 116 CG1 CG2 CD1 REMARK 470 VAL A 117 CG1 CG2 REMARK 470 TRP A 118 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 118 CZ3 CH2 REMARK 470 ASP A 119 CG OD1 OD2 REMARK 470 ARG A 124 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 125 CG CD OE1 NE2 REMARK 470 VAL A 126 CG1 CG2 REMARK 470 GLN A 127 CG CD OE1 NE2 REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 129 CG1 CG2 CD1 REMARK 470 SER A 130 OG REMARK 470 CYS A 131 SG REMARK 470 PHE A 132 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 133 CG CD OE1 NE2 REMARK 470 SER A 134 OG REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 ARG A 144 CD NE CZ NH1 NH2 REMARK 470 ASP A 146 CG OD1 OD2 REMARK 470 LEU A 155 CG CD1 CD2 REMARK 470 ASN A 159 CG OD1 ND2 REMARK 470 ARG A 160 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 LEU A 162 CG CD1 CD2 REMARK 470 ASP A 163 CG OD1 OD2 REMARK 470 LEU A 164 CG CD1 CD2 REMARK 470 LYS A 167 CG CD CE NZ REMARK 470 SER A 169 OG REMARK 470 SER A 172 OG REMARK 470 ASP A 173 CG OD1 OD2 REMARK 470 THR A 174 OG1 CG2 REMARK 470 LEU A 200 CD1 CD2 REMARK 470 THR A 204 OG1 CG2 REMARK 470 GLU A 205 CG CD OE1 OE2 REMARK 470 SER A 235 OG REMARK 470 HIS A 241 ND1 CD2 CE1 NE2 REMARK 470 VAL A 242 CG1 CG2 REMARK 470 ARG A 260 NE CZ NH1 NH2 REMARK 470 ASN A 261 CG OD1 ND2 REMARK 470 GLU A 293 CG CD OE1 OE2 REMARK 470 GLU A 294 CG CD OE1 OE2 REMARK 470 ARG A 302 CD NE CZ NH1 NH2 REMARK 470 LYS A 312 CD CE NZ REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 THR A 320 OG1 CG2 REMARK 470 SER A 324 OG REMARK 470 ASN A 325 OD1 ND2 REMARK 470 ARG A 335 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 346 CG1 CG2 REMARK 470 GLU A 350 CG CD OE1 OE2 REMARK 470 ARG A 352 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 353 CA C O CB CG CD OE1 REMARK 470 GLU A 353 OE2 REMARK 470 LYS A 354 CG CD CE NZ REMARK 470 GLN A 355 CD OE1 NE2 REMARK 470 GLN A 356 CG CD OE1 NE2 REMARK 470 GLU A 396 OE1 OE2 REMARK 470 LEU A 397 CG CD1 CD2 REMARK 470 ASP A 400 CG OD1 OD2 REMARK 470 LEU A 401 CG CD1 CD2 REMARK 470 ILE A 402 CG1 CG2 CD1 REMARK 470 PHE A 411 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 415 CG CD OE1 OE2 REMARK 470 ASP A 416 CG OD1 OD2 REMARK 470 LEU A 427 CG CD1 CD2 REMARK 470 LYS A 432 NZ REMARK 470 ASN A 433 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 32 -80.43 -98.49 REMARK 500 ALA A 41 -35.23 -155.63 REMARK 500 ASP A 53 -156.22 -163.64 REMARK 500 TYR A 55 33.89 -145.75 REMARK 500 GLN A 72 -77.20 -80.26 REMARK 500 LYS A 86 140.24 -34.93 REMARK 500 ASP A 119 -162.60 -112.98 REMARK 500 GLN A 125 -168.27 -73.56 REMARK 500 ILE A 129 74.28 -111.24 REMARK 500 PHE A 132 -136.47 -85.72 REMARK 500 GLN A 133 -71.72 -133.41 REMARK 500 GLU A 205 -48.77 -20.77 REMARK 500 SER A 207 81.87 -153.03 REMARK 500 ASN A 232 -159.08 56.34 REMARK 500 ARG A 260 -27.08 -141.51 REMARK 500 ASP A 292 -158.20 -159.22 REMARK 500 GLN A 355 76.64 57.07 REMARK 500 SER A 405 -64.56 -98.50 REMARK 500 HIS A 417 -58.87 -124.60 REMARK 500 HIS A 426 0.38 88.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 352 11.28 REMARK 500 REMARK 500 REMARK: NULL DBREF 6WHH A 30 440 UNP Q9HAD4 WDR41_HUMAN 30 440 SEQADV 6WHH GLY A 29 UNP Q9HAD4 EXPRESSION TAG SEQADV 6WHH A UNP Q9HAD4 LEU 357 DELETION SEQADV 6WHH A UNP Q9HAD4 ALA 358 DELETION SEQADV 6WHH A UNP Q9HAD4 ALA 359 DELETION SEQADV 6WHH A UNP Q9HAD4 GLU 360 DELETION SEQADV 6WHH A UNP Q9HAD4 PRO 361 DELETION SEQADV 6WHH A UNP Q9HAD4 VAL 362 DELETION SEQADV 6WHH A UNP Q9HAD4 PRO 363 DELETION SEQADV 6WHH A UNP Q9HAD4 THR 364 DELETION SEQADV 6WHH A UNP Q9HAD4 GLY 365 DELETION SEQADV 6WHH A UNP Q9HAD4 PHE 366 DELETION SEQADV 6WHH A UNP Q9HAD4 PHE 367 DELETION SEQADV 6WHH A UNP Q9HAD4 ASN 368 DELETION SEQADV 6WHH A UNP Q9HAD4 MET 369 DELETION SEQADV 6WHH A UNP Q9HAD4 TRP 370 DELETION SEQADV 6WHH A UNP Q9HAD4 GLY 371 DELETION SEQADV 6WHH A UNP Q9HAD4 PHE 372 DELETION SEQADV 6WHH A UNP Q9HAD4 GLY 373 DELETION SEQADV 6WHH A UNP Q9HAD4 ARG 374 DELETION SEQADV 6WHH A UNP Q9HAD4 VAL 375 DELETION SEQADV 6WHH A UNP Q9HAD4 SER 376 DELETION SEQADV 6WHH A UNP Q9HAD4 LYS 377 DELETION SEQADV 6WHH A UNP Q9HAD4 GLN 378 DELETION SEQADV 6WHH A UNP Q9HAD4 ALA 379 DELETION SEQADV 6WHH A UNP Q9HAD4 SER 380 DELETION SEQADV 6WHH A UNP Q9HAD4 GLN 381 DELETION SEQADV 6WHH A UNP Q9HAD4 PRO 382 DELETION SEQADV 6WHH A UNP Q9HAD4 VAL 383 DELETION SEQADV 6WHH A UNP Q9HAD4 LYS 384 DELETION SEQADV 6WHH A UNP Q9HAD4 LYS 385 DELETION SEQADV 6WHH A UNP Q9HAD4 GLN 386 DELETION SEQADV 6WHH A UNP Q9HAD4 GLN 387 DELETION SEQADV 6WHH A UNP Q9HAD4 GLU 388 DELETION SEQADV 6WHH A UNP Q9HAD4 ASN 389 DELETION SEQADV 6WHH A UNP Q9HAD4 ALA 390 DELETION SEQADV 6WHH A UNP Q9HAD4 THR 391 DELETION SEQADV 6WHH A UNP Q9HAD4 SER 392 DELETION SEQADV 6WHH A UNP Q9HAD4 CYS 393 DELETION SEQADV 6WHH A UNP Q9HAD4 SER 394 DELETION SEQRES 1 A 374 GLY GLN ASN PRO TYR THR GLU LEU LEU VAL LEU LYS ALA SEQRES 2 A 374 HIS HIS ASP ILE VAL ARG PHE LEU VAL GLN LEU ASP ASP SEQRES 3 A 374 TYR ARG PHE ALA SER ALA GLY ASP ASP GLY ILE VAL VAL SEQRES 4 A 374 VAL TRP ASN ALA GLN THR GLY GLU LYS LEU LEU GLU LEU SEQRES 5 A 374 ASN GLY HIS THR GLN LYS ILE THR ALA ILE ILE THR PHE SEQRES 6 A 374 PRO SER LEU GLU SER CYS GLU GLU LYS ASN GLN LEU ILE SEQRES 7 A 374 LEU THR ALA SER ALA ASP ARG THR VAL ILE VAL TRP ASP SEQRES 8 A 374 GLY ASP THR THR ARG GLN VAL GLN ARG ILE SER CYS PHE SEQRES 9 A 374 GLN SER THR VAL LYS CYS LEU THR VAL LEU GLN ARG LEU SEQRES 10 A 374 ASP VAL TRP LEU SER GLY GLY ASN ASP LEU CYS VAL TRP SEQRES 11 A 374 ASN ARG LYS LEU ASP LEU LEU CYS LYS THR SER HIS LEU SEQRES 12 A 374 SER ASP THR GLY ILE SER ALA LEU VAL GLU ILE PRO LYS SEQRES 13 A 374 ASN CYS VAL VAL ALA ALA VAL GLY LYS GLU LEU ILE ILE SEQRES 14 A 374 PHE ARG LEU VAL ALA PRO THR GLU GLY SER LEU GLU TRP SEQRES 15 A 374 ASP ILE LEU GLU VAL LYS ARG LEU LEU ASP HIS GLN ASP SEQRES 16 A 374 ASN ILE LEU SER LEU ILE ASN VAL ASN ASP LEU SER PHE SEQRES 17 A 374 VAL THR GLY SER HIS VAL GLY GLU LEU ILE ILE TRP ASP SEQRES 18 A 374 ALA LEU ASP TRP THR MET GLN ALA TYR GLU ARG ASN PHE SEQRES 19 A 374 TRP ASP PRO SER PRO GLN LEU ASP THR GLN GLN GLU ILE SEQRES 20 A 374 LYS LEU CYS GLN LYS SER ASN ASP ILE SER ILE HIS HIS SEQRES 21 A 374 PHE THR CYS ASP GLU GLU ASN VAL PHE ALA ALA VAL GLY SEQRES 22 A 374 ARG GLY LEU TYR VAL TYR SER LEU GLN MET LYS ARG VAL SEQRES 23 A 374 ILE ALA CYS GLN LYS THR ALA HIS ASP SER ASN VAL LEU SEQRES 24 A 374 HIS VAL ALA ARG LEU PRO ASN ARG GLN LEU ILE SER CYS SEQRES 25 A 374 SER GLU ASP GLY SER VAL ARG ILE TRP GLU LEU ARG GLU SEQRES 26 A 374 LYS GLN GLN LEU GLU LEU ILE GLY ASP LEU ILE GLY HIS SEQRES 27 A 374 SER SER SER VAL GLU MET PHE LEU TYR PHE GLU ASP HIS SEQRES 28 A 374 GLY LEU VAL THR CYS SER ALA ASP HIS LEU ILE ILE LEU SEQRES 29 A 374 TRP LYS ASN GLY GLU ARG GLU SER GLY LEU SHEET 1 AA1 4 GLU A 35 LYS A 40 0 SHEET 2 AA1 4 LEU A 427 LYS A 432 -1 O ILE A 428 N LEU A 39 SHEET 3 AA1 4 GLY A 418 SER A 423 -1 N LEU A 419 O TRP A 431 SHEET 4 AA1 4 VAL A 408 PHE A 414 -1 N LEU A 412 O VAL A 420 SHEET 1 AA2 4 VAL A 46 ASP A 53 0 SHEET 2 AA2 4 ARG A 56 GLY A 61 -1 O ARG A 56 N LEU A 52 SHEET 3 AA2 4 VAL A 66 TRP A 69 -1 O TRP A 69 N PHE A 57 SHEET 4 AA2 4 LYS A 76 LEU A 80 -1 O LEU A 80 N VAL A 66 SHEET 1 AA3 4 ILE A 87 PHE A 93 0 SHEET 2 AA3 4 LEU A 105 SER A 110 -1 O LEU A 107 N ILE A 91 SHEET 3 AA3 4 THR A 114 TRP A 118 -1 O ILE A 116 N THR A 108 SHEET 4 AA3 4 VAL A 126 CYS A 131 -1 O SER A 130 N VAL A 115 SHEET 1 AA4 4 CYS A 138 LEU A 142 0 SHEET 2 AA4 4 VAL A 147 GLY A 151 -1 O GLY A 151 N CYS A 138 SHEET 3 AA4 4 LEU A 155 TRP A 158 -1 O TRP A 158 N TRP A 148 SHEET 4 AA4 4 LEU A 164 LYS A 167 -1 O CYS A 166 N VAL A 157 SHEET 1 AA5 4 ALA A 178 ILE A 182 0 SHEET 2 AA5 4 CYS A 186 VAL A 191 -1 O CYS A 186 N ILE A 182 SHEET 3 AA5 4 GLU A 194 VAL A 201 -1 O ILE A 196 N ALA A 189 SHEET 4 AA5 4 ASP A 211 LEU A 218 -1 O LEU A 213 N ARG A 199 SHEET 1 AA6 4 ILE A 225 VAL A 231 0 SHEET 2 AA6 4 SER A 235 SER A 240 -1 O SER A 235 N VAL A 231 SHEET 3 AA6 4 LEU A 245 ASP A 249 -1 O ILE A 246 N THR A 238 SHEET 4 AA6 4 MET A 255 GLU A 259 -1 O GLN A 256 N ILE A 247 SHEET 1 AA7 4 ILE A 286 CYS A 291 0 SHEET 2 AA7 4 ASN A 295 VAL A 300 -1 O PHE A 297 N THR A 290 SHEET 3 AA7 4 GLY A 303 SER A 308 -1 O TYR A 307 N VAL A 296 SHEET 4 AA7 4 VAL A 314 GLN A 318 -1 O GLN A 318 N LEU A 304 SHEET 1 AA8 4 VAL A 326 ARG A 331 0 SHEET 2 AA8 4 GLN A 336 SER A 341 -1 O CYS A 340 N LEU A 327 SHEET 3 AA8 4 VAL A 346 LEU A 351 -1 O TRP A 349 N LEU A 337 SHEET 4 AA8 4 LEU A 395 ASP A 400 -1 O ILE A 398 N ILE A 348 CRYST1 103.540 103.540 138.610 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009658 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009658 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007214 0.00000