HEADER LIGASE 09-APR-20 6WI8 TITLE INHIBITOR COMPOUND-INDUCED CONFRONTATIONAL CHANGE IN RING1B-BMI1 TITLE 2 DOMAIN STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RING2,POLYCOMB COMPLEX PROTEIN COMPND 3 BMI-1 CHIMERA; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: RING-2 (UNP RESIDUES 10-116) + BMI-1 (UNP RESIDUES 1-104); COMPND 6 SYNONYM: POLYCOMB GROUP RING FINGER PROTEIN 4,RING FINGER PROTEIN 51; COMPND 7 EC: 5.-.-.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RNF2, BMI1, PCGF4, RNF51; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET32A KEYWDS E3 UBIQUITIN LIGASE RING1B, BMI1, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR H.J.CHO,T.CIERPICKI REVDAT 3 18-OCT-23 6WI8 1 REMARK REVDAT 2 27-OCT-21 6WI8 1 JRNL REVDAT 1 14-APR-21 6WI8 0 JRNL AUTH S.SHUKLA,W.YING,F.GRAY,Y.YAO,M.L.SIMES,Q.ZHAO,H.MIAO, JRNL AUTH 2 H.J.CHO,P.GONZALEZ-ALONSO,A.WINKLER,G.LUND,T.PUROHIT,E.KIM, JRNL AUTH 3 X.ZHANG,J.M.RAY,S.HE,C.NIKOLAIDIS,J.NDOJ,J.WANG,L.JAREMKO, JRNL AUTH 4 M.JAREMKO,R.J.H.RYAN,M.L.GUZMAN,J.GREMBECKA,T.CIERPICKI JRNL TITL SMALL-MOLECULE INHIBITORS TARGETING POLYCOMB REPRESSIVE JRNL TITL 2 COMPLEX 1 RING DOMAIN. JRNL REF NAT.CHEM.BIOL. V. 17 784 2021 JRNL REFN ESSN 1552-4469 JRNL PMID 34155404 JRNL DOI 10.1038/S41589-021-00815-5 REMARK 2 REMARK 2 RESOLUTION. 3.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 7292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.960 REMARK 3 FREE R VALUE TEST SET COUNT : 726 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.7000 - 5.2836 0.99 1347 151 0.1951 0.2301 REMARK 3 2 5.2836 - 4.1950 0.99 1338 149 0.1829 0.2374 REMARK 3 3 4.1950 - 3.6651 0.99 1337 152 0.2100 0.2497 REMARK 3 4 3.6651 - 3.3301 0.97 1305 136 0.2278 0.3230 REMARK 3 5 3.3301 - 3.1000 0.93 1239 138 0.2620 0.3352 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3215 REMARK 3 ANGLE : 0.541 4356 REMARK 3 CHIRALITY : 0.041 517 REMARK 3 PLANARITY : 0.004 544 REMARK 3 DIHEDRAL : 12.269 1998 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3684 2.1855 -5.0141 REMARK 3 T TENSOR REMARK 3 T11: 0.4447 T22: 0.4352 REMARK 3 T33: 0.4846 T12: 0.0146 REMARK 3 T13: 0.0977 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 2.6780 L22: 7.5913 REMARK 3 L33: 4.3071 L12: 1.3545 REMARK 3 L13: -0.0693 L23: 1.1617 REMARK 3 S TENSOR REMARK 3 S11: -0.1531 S12: 0.1798 S13: -0.2719 REMARK 3 S21: -0.7664 S22: -0.4491 S23: -0.5020 REMARK 3 S31: 0.7940 S32: 0.0065 S33: 0.4646 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6727 -13.3184 13.6460 REMARK 3 T TENSOR REMARK 3 T11: 0.8729 T22: 0.3673 REMARK 3 T33: 0.3340 T12: -0.0166 REMARK 3 T13: -0.0534 T23: 0.0411 REMARK 3 L TENSOR REMARK 3 L11: 6.8423 L22: 4.1728 REMARK 3 L33: 6.6846 L12: -1.5745 REMARK 3 L13: -0.9742 L23: -2.7270 REMARK 3 S TENSOR REMARK 3 S11: -0.0632 S12: -0.4992 S13: -0.4194 REMARK 3 S21: 0.7612 S22: -0.1587 S23: 0.3065 REMARK 3 S31: 1.2166 S32: 0.4875 S33: 0.0717 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 1015 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9788 -9.5463 0.7064 REMARK 3 T TENSOR REMARK 3 T11: 0.4279 T22: 0.5012 REMARK 3 T33: 0.4742 T12: -0.1028 REMARK 3 T13: 0.0821 T23: -0.0779 REMARK 3 L TENSOR REMARK 3 L11: 2.3332 L22: 2.3660 REMARK 3 L33: 8.9060 L12: 0.4949 REMARK 3 L13: -0.0319 L23: -1.9978 REMARK 3 S TENSOR REMARK 3 S11: -0.1817 S12: -0.2341 S13: 0.0418 REMARK 3 S21: -0.1453 S22: -0.0175 S23: 0.6405 REMARK 3 S31: 1.9427 S32: -0.6810 S33: -0.0916 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1016 THROUGH 1102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8293 6.7965 1.2332 REMARK 3 T TENSOR REMARK 3 T11: 0.1364 T22: 0.3164 REMARK 3 T33: 0.3295 T12: 0.0437 REMARK 3 T13: -0.0387 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 3.8746 L22: 2.9212 REMARK 3 L33: 2.6572 L12: 2.3419 REMARK 3 L13: -1.0219 L23: 0.7459 REMARK 3 S TENSOR REMARK 3 S11: -0.1042 S12: 0.4418 S13: 0.0353 REMARK 3 S21: 0.1111 S22: -0.0405 S23: 0.1271 REMARK 3 S31: 0.0116 S32: -0.0775 S33: 0.1574 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6322 26.1658 29.8199 REMARK 3 T TENSOR REMARK 3 T11: 0.2957 T22: 0.4914 REMARK 3 T33: 0.2815 T12: 0.0123 REMARK 3 T13: 0.0681 T23: 0.0761 REMARK 3 L TENSOR REMARK 3 L11: 5.5092 L22: 8.1459 REMARK 3 L33: 2.5737 L12: 2.4531 REMARK 3 L13: 3.4964 L23: 0.4675 REMARK 3 S TENSOR REMARK 3 S11: 0.3208 S12: 0.4467 S13: -0.0822 REMARK 3 S21: 0.6016 S22: 0.0356 S23: 0.0487 REMARK 3 S31: 0.0652 S32: -0.5365 S33: -0.2070 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 37 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4133 51.3171 27.3375 REMARK 3 T TENSOR REMARK 3 T11: 0.8835 T22: 1.1990 REMARK 3 T33: 1.0905 T12: -0.2353 REMARK 3 T13: 0.1462 T23: -0.3863 REMARK 3 L TENSOR REMARK 3 L11: 8.1651 L22: 5.3055 REMARK 3 L33: 2.0010 L12: -0.3414 REMARK 3 L13: -5.1132 L23: 7.4794 REMARK 3 S TENSOR REMARK 3 S11: 0.6343 S12: -0.1962 S13: 1.4513 REMARK 3 S21: -1.1298 S22: 0.7333 S23: -0.5668 REMARK 3 S31: -3.7686 S32: 3.9374 S33: -1.6667 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 55 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3003 49.8842 10.8850 REMARK 3 T TENSOR REMARK 3 T11: 1.6886 T22: 0.5984 REMARK 3 T33: 0.6824 T12: -0.1101 REMARK 3 T13: -0.2334 T23: 0.0709 REMARK 3 L TENSOR REMARK 3 L11: 8.0633 L22: 5.7523 REMARK 3 L33: 0.6812 L12: 2.5260 REMARK 3 L13: 0.0779 L23: -1.8092 REMARK 3 S TENSOR REMARK 3 S11: -0.2155 S12: 0.8681 S13: 0.5691 REMARK 3 S21: -1.2174 S22: -0.3158 S23: -0.2102 REMARK 3 S31: -2.0353 S32: 0.0723 S33: 0.3185 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 1011 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9119 46.8839 22.1037 REMARK 3 T TENSOR REMARK 3 T11: 0.4891 T22: 0.4298 REMARK 3 T33: 0.5729 T12: 0.0691 REMARK 3 T13: -0.1915 T23: 0.1230 REMARK 3 L TENSOR REMARK 3 L11: 1.4910 L22: 3.8669 REMARK 3 L33: 5.9162 L12: 0.5252 REMARK 3 L13: -1.3532 L23: 0.2678 REMARK 3 S TENSOR REMARK 3 S11: -0.6319 S12: -0.0196 S13: 0.1648 REMARK 3 S21: -0.4402 S22: -0.5675 S23: 1.0441 REMARK 3 S31: -0.8354 S32: 0.3076 S33: 0.3563 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1012 THROUGH 1102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1780 30.4075 23.8144 REMARK 3 T TENSOR REMARK 3 T11: 0.2636 T22: 0.3879 REMARK 3 T33: 0.3637 T12: -0.0005 REMARK 3 T13: 0.0877 T23: -0.0368 REMARK 3 L TENSOR REMARK 3 L11: 2.5365 L22: 4.5276 REMARK 3 L33: 3.2047 L12: -1.0442 REMARK 3 L13: 0.7340 L23: 1.6901 REMARK 3 S TENSOR REMARK 3 S11: -0.1031 S12: 0.0424 S13: -0.0667 REMARK 3 S21: -0.1817 S22: -0.3112 S23: 0.4138 REMARK 3 S31: -0.2649 S32: -0.2115 S33: 0.3966 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WI8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000248262. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7292 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.090 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 13.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44300 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 6WI7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM ACETATE, PH 4.5, 200 MM LITHIUM REMARK 280 SULFATE, 2.5 M SODIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 77.37100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 10 REMARK 465 GLN A 11 REMARK 465 PRO A 12 REMARK 465 LEU A 13 REMARK 465 SER A 14 REMARK 465 SER A 1000 REMARK 465 MET A 1001 REMARK 465 HIS A 1002 REMARK 465 ARG A 1003 REMARK 465 SER A 1103 REMARK 465 ALA A 1104 REMARK 465 THR B 10 REMARK 465 GLN B 11 REMARK 465 PRO B 12 REMARK 465 LEU B 13 REMARK 465 SER B 14 REMARK 465 LYS B 15 REMARK 465 SER B 1000 REMARK 465 MET B 1001 REMARK 465 HIS B 1002 REMARK 465 ARG B 1003 REMARK 465 SER B 1103 REMARK 465 ALA B 1104 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 MET A 50 CG SD CE REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 LYS A1073 CG CD CE NZ REMARK 470 ARG B 43 CG CD NE CZ NH1 NH2 REMARK 470 MET B 50 CG SD CE REMARK 470 ILE B 53 CG1 CG2 CD1 REMARK 470 GLU B 66 CG CD OE1 OE2 REMARK 470 LEU B 80 CG CD1 CD2 REMARK 470 ARG B 98 CG CD NE CZ NH1 NH2 REMARK 470 GLU B1033 CG CD OE1 OE2 REMARK 470 LYS B1062 CG CD CE NZ REMARK 470 LYS B1073 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 17 47.23 -87.31 REMARK 500 ASP A 34 103.76 -56.51 REMARK 500 ASN A 60 74.61 51.99 REMARK 500 CYS A 67 -5.85 -141.13 REMARK 500 SER A 96 -28.10 57.89 REMARK 500 SER A 111 0.27 -67.32 REMARK 500 ILE A 113 20.14 -148.77 REMARK 500 ILE A1055 -76.43 -101.49 REMARK 500 THR A1063 -57.75 -127.49 REMARK 500 TRP B 17 63.73 -107.03 REMARK 500 ASN B 60 79.29 55.86 REMARK 500 ASN B 84 -32.51 -137.04 REMARK 500 THR B 89 -63.94 -102.29 REMARK 500 ASP B1027 76.97 55.11 REMARK 500 ILE B1055 -67.77 -109.81 REMARK 500 THR B1063 -61.63 -127.41 REMARK 500 ASP B1072 75.15 -108.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 51 SG REMARK 620 2 CYS A 54 SG 107.0 REMARK 620 3 CYS A 72 SG 103.3 105.1 REMARK 620 4 CYS A 75 SG 114.8 107.2 118.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 67 SG REMARK 620 2 HIS A 69 ND1 104.7 REMARK 620 3 CYS A 87 SG 102.6 116.4 REMARK 620 4 CYS A 90 SG 101.7 120.0 108.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1018 SG REMARK 620 2 CYS A1021 SG 111.1 REMARK 620 3 CYS A1039 SG 105.4 102.6 REMARK 620 4 CYS A1042 SG 104.3 115.9 117.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1034 SG REMARK 620 2 HIS A1036 ND1 114.2 REMARK 620 3 CYS A1053 SG 114.6 111.6 REMARK 620 4 CYS A1056 SG 105.3 105.2 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 51 SG REMARK 620 2 CYS B 54 SG 110.7 REMARK 620 3 CYS B 72 SG 100.9 96.4 REMARK 620 4 CYS B 75 SG 117.9 121.1 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 67 SG REMARK 620 2 HIS B 69 ND1 112.3 REMARK 620 3 CYS B 87 SG 94.7 94.7 REMARK 620 4 CYS B 90 SG 99.7 125.5 126.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1018 SG REMARK 620 2 CYS B1039 SG 110.7 REMARK 620 3 CYS B1042 SG 98.0 123.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1034 SG REMARK 620 2 HIS B1036 ND1 94.5 REMARK 620 3 CYS B1053 SG 118.3 137.2 REMARK 620 4 CYS B1056 SG 98.7 105.3 96.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1204 DBREF 6WI8 A 10 1000 UNP X6RFN3 X6RFN3_HUMAN 10 116 DBREF 6WI8 A 1001 1104 UNP P35226 BMI1_HUMAN 1 104 DBREF 6WI8 B 10 1000 UNP X6RFN3 X6RFN3_HUMAN 10 116 DBREF 6WI8 B 1001 1104 UNP P35226 BMI1_HUMAN 1 104 SEQRES 1 A 211 THR GLN PRO LEU SER LYS THR TRP GLU LEU SER LEU TYR SEQRES 2 A 211 GLU LEU GLN ARG THR PRO GLN GLU ALA ILE THR ASP GLY SEQRES 3 A 211 LEU GLU ILE VAL VAL SER PRO ARG SER LEU HIS SER GLU SEQRES 4 A 211 LEU MET CYS PRO ILE CYS LEU ASP MET LEU LYS ASN THR SEQRES 5 A 211 MET THR THR LYS GLU CYS LEU HIS ARG PHE CYS ALA ASP SEQRES 6 A 211 CYS ILE ILE THR ALA LEU ARG SER GLY ASN LYS GLU CYS SEQRES 7 A 211 PRO THR CYS ARG LYS LYS LEU VAL SER LYS ARG SER LEU SEQRES 8 A 211 ARG PRO ASP PRO ASN PHE ASP ALA LEU ILE SER LYS ILE SEQRES 9 A 211 TYR PRO SER MET HIS ARG THR THR ARG ILE LYS ILE THR SEQRES 10 A 211 GLU LEU ASN PRO HIS LEU MET CYS VAL LEU CYS GLY GLY SEQRES 11 A 211 TYR PHE ILE ASP ALA THR THR ILE ILE GLU CYS LEU HIS SEQRES 12 A 211 SER PHE CYS LYS THR CYS ILE VAL ARG TYR LEU GLU THR SEQRES 13 A 211 SER LYS TYR CYS PRO ILE CYS ASP VAL GLN VAL HIS LYS SEQRES 14 A 211 THR ARG PRO LEU LEU ASN ILE ARG SER ASP LYS THR LEU SEQRES 15 A 211 GLN ASP ILE VAL TYR LYS LEU VAL PRO GLY LEU PHE LYS SEQRES 16 A 211 ASN GLU MET LYS ARG ARG ARG ASP PHE TYR ALA ALA HIS SEQRES 17 A 211 PRO SER ALA SEQRES 1 B 211 THR GLN PRO LEU SER LYS THR TRP GLU LEU SER LEU TYR SEQRES 2 B 211 GLU LEU GLN ARG THR PRO GLN GLU ALA ILE THR ASP GLY SEQRES 3 B 211 LEU GLU ILE VAL VAL SER PRO ARG SER LEU HIS SER GLU SEQRES 4 B 211 LEU MET CYS PRO ILE CYS LEU ASP MET LEU LYS ASN THR SEQRES 5 B 211 MET THR THR LYS GLU CYS LEU HIS ARG PHE CYS ALA ASP SEQRES 6 B 211 CYS ILE ILE THR ALA LEU ARG SER GLY ASN LYS GLU CYS SEQRES 7 B 211 PRO THR CYS ARG LYS LYS LEU VAL SER LYS ARG SER LEU SEQRES 8 B 211 ARG PRO ASP PRO ASN PHE ASP ALA LEU ILE SER LYS ILE SEQRES 9 B 211 TYR PRO SER MET HIS ARG THR THR ARG ILE LYS ILE THR SEQRES 10 B 211 GLU LEU ASN PRO HIS LEU MET CYS VAL LEU CYS GLY GLY SEQRES 11 B 211 TYR PHE ILE ASP ALA THR THR ILE ILE GLU CYS LEU HIS SEQRES 12 B 211 SER PHE CYS LYS THR CYS ILE VAL ARG TYR LEU GLU THR SEQRES 13 B 211 SER LYS TYR CYS PRO ILE CYS ASP VAL GLN VAL HIS LYS SEQRES 14 B 211 THR ARG PRO LEU LEU ASN ILE ARG SER ASP LYS THR LEU SEQRES 15 B 211 GLN ASP ILE VAL TYR LYS LEU VAL PRO GLY LEU PHE LYS SEQRES 16 B 211 ASN GLU MET LYS ARG ARG ARG ASP PHE TYR ALA ALA HIS SEQRES 17 B 211 PRO SER ALA HET ZN A1201 1 HET ZN A1202 1 HET ZN A1203 1 HET ZN A1204 1 HET ZN B1201 1 HET ZN B1202 1 HET ZN B1203 1 HET ZN B1204 1 HETNAM ZN ZINC ION FORMUL 3 ZN 8(ZN 2+) FORMUL 11 HOH *5(H2 O) HELIX 1 AA1 SER A 20 GLN A 25 1 6 HELIX 2 AA2 LEU A 45 MET A 50 1 6 HELIX 3 AA3 ALA A 73 SER A 82 1 10 HELIX 4 AA4 ASP A 103 SER A 111 1 9 HELIX 5 AA5 THR A 1010 HIS A 1015 5 6 HELIX 6 AA6 LYS A 1040 LEU A 1047 1 8 HELIX 7 AA7 ARG A 1064 LEU A 1067 5 4 HELIX 8 AA8 ASP A 1072 VAL A 1083 1 12 HELIX 9 AA9 GLY A 1085 ALA A 1099 1 15 HELIX 10 AB1 SER B 20 ARG B 26 1 7 HELIX 11 AB2 ALA B 73 LEU B 80 1 8 HELIX 12 AB3 ASP B 103 SER B 111 1 9 HELIX 13 AB4 LEU B 1012 MET B 1017 1 6 HELIX 14 AB5 LYS B 1040 LEU B 1047 1 8 HELIX 15 AB6 ARG B 1064 LEU B 1067 5 4 HELIX 16 AB7 ASP B 1072 VAL B 1083 1 12 HELIX 17 AB8 GLY B 1085 ALA B 1099 1 15 SHEET 1 AA1 2 GLU A 37 VAL A 39 0 SHEET 2 AA1 2 ARG A1006 LYS A1008 -1 O ILE A1007 N ILE A 38 SHEET 1 AA2 3 ARG A 70 CYS A 72 0 SHEET 2 AA2 3 THR A 61 THR A 64 -1 N MET A 62 O PHE A 71 SHEET 3 AA2 3 LEU A 100 PRO A 102 -1 O ARG A 101 N THR A 63 SHEET 1 AA3 2 MET A1017 CYS A1018 0 SHEET 2 AA3 2 GLY A1023 TYR A1024 -1 O GLY A1023 N CYS A1018 SHEET 1 AA4 3 SER A1037 CYS A1039 0 SHEET 2 AA4 3 ALA A1028 ILE A1031 -1 N THR A1029 O PHE A1038 SHEET 3 AA4 3 ILE A1069 SER A1071 -1 O ARG A1070 N THR A1030 SHEET 1 AA5 2 GLU B 37 VAL B 40 0 SHEET 2 AA5 2 THR B1005 LYS B1008 -1 O THR B1005 N VAL B 40 SHEET 1 AA6 3 ARG B 70 CYS B 72 0 SHEET 2 AA6 3 THR B 61 THR B 64 -1 N MET B 62 O PHE B 71 SHEET 3 AA6 3 LEU B 100 PRO B 102 -1 O ARG B 101 N THR B 63 SHEET 1 AA7 3 HIS B1036 CYS B1039 0 SHEET 2 AA7 3 ALA B1028 ILE B1031 -1 N THR B1029 O PHE B1038 SHEET 3 AA7 3 ILE B1069 SER B1071 -1 O ARG B1070 N THR B1030 LINK SG CYS A 51 ZN ZN A1204 1555 1555 2.49 LINK SG CYS A 54 ZN ZN A1204 1555 1555 2.41 LINK SG CYS A 67 ZN ZN A1203 1555 1555 2.41 LINK ND1 HIS A 69 ZN ZN A1203 1555 1555 2.07 LINK SG CYS A 72 ZN ZN A1204 1555 1555 2.43 LINK SG CYS A 75 ZN ZN A1204 1555 1555 2.42 LINK SG CYS A 87 ZN ZN A1203 1555 1555 2.34 LINK SG CYS A 90 ZN ZN A1203 1555 1555 2.35 LINK SG CYS A1018 ZN ZN A1201 1555 1555 2.59 LINK SG CYS A1021 ZN ZN A1201 1555 1555 2.33 LINK SG CYS A1034 ZN ZN A1202 1555 1555 2.31 LINK ND1 HIS A1036 ZN ZN A1202 1555 1555 2.12 LINK SG CYS A1039 ZN ZN A1201 1555 1555 2.49 LINK SG CYS A1042 ZN ZN A1201 1555 1555 2.41 LINK SG CYS A1053 ZN ZN A1202 1555 1555 2.31 LINK SG CYS A1056 ZN ZN A1202 1555 1555 2.30 LINK SG CYS B 51 ZN ZN B1204 1555 1555 2.46 LINK SG CYS B 54 ZN ZN B1204 1555 1555 2.59 LINK SG CYS B 67 ZN ZN B1203 1555 1555 2.41 LINK ND1 HIS B 69 ZN ZN B1203 1555 1555 2.09 LINK SG CYS B 72 ZN ZN B1204 1555 1555 2.93 LINK SG CYS B 75 ZN ZN B1204 1555 1555 2.69 LINK SG CYS B 87 ZN ZN B1203 1555 1555 2.36 LINK SG CYS B 90 ZN ZN B1203 1555 1555 2.37 LINK SG CYS B1018 ZN ZN B1201 1555 1555 2.77 LINK SG CYS B1034 ZN ZN B1202 1555 1555 2.35 LINK ND1 HIS B1036 ZN ZN B1202 1555 1555 2.24 LINK SG CYS B1039 ZN ZN B1201 1555 1555 2.50 LINK SG CYS B1042 ZN ZN B1201 1555 1555 2.44 LINK SG CYS B1053 ZN ZN B1202 1555 1555 2.36 LINK SG CYS B1056 ZN ZN B1202 1555 1555 2.38 SITE 1 AC1 5 ARG A 26 CYS A1018 CYS A1021 CYS A1039 SITE 2 AC1 5 CYS A1042 SITE 1 AC2 4 CYS A1034 HIS A1036 CYS A1053 CYS A1056 SITE 1 AC3 4 CYS A 67 HIS A 69 CYS A 87 CYS A 90 SITE 1 AC4 4 CYS A 51 CYS A 54 CYS A 72 CYS A 75 SITE 1 AC5 4 CYS B1018 CYS B1021 CYS B1039 CYS B1042 SITE 1 AC6 4 CYS B1034 HIS B1036 CYS B1053 CYS B1056 SITE 1 AC7 4 CYS B 67 HIS B 69 CYS B 87 CYS B 90 SITE 1 AC8 4 CYS B 51 CYS B 54 CYS B 72 CYS B 75 CRYST1 27.081 154.742 49.579 90.00 92.26 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.036926 0.000000 0.001460 0.00000 SCALE2 0.000000 0.006462 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020186 0.00000