HEADER HYDROLASE 09-APR-20 6WII
TITLE CRYSTAL STRUCTURE OF THE K. PNEUMONIAE LPXH/JH-LPH-41 COMPLEX
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: UDP-2,3-DIACYLGLUCOSAMINE HYDROLASE;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: UDP-2,3-DIACYLGLUCOSAMINE DIPHOSPHATASE;
COMPND 5 EC: 3.6.1.54;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE;
SOURCE 3 ORGANISM_TAXID: 573;
SOURCE 4 GENE: LPXH_1, LPXH, C3483_19950, NCTC9128_00880,
SOURCE 5 SAMEA104305404_03891;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS LPXH, JH-LPH-41, LIPID A, ANTIBIOTIC, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR C.S.COCHRANE,J.CHO,B.A.FENTON,P.ZHOU
REVDAT 2 18-OCT-23 6WII 1 REMARK
REVDAT 1 29-JUL-20 6WII 0
JRNL AUTH S.H.KWAK,C.S.COCHRANE,A.F.ENNIS,W.Y.LIM,C.G.WEBSTER,J.CHO,
JRNL AUTH 2 B.A.FENTON,P.ZHOU,J.HONG
JRNL TITL SYNTHESIS AND EVALUATION OF SULFONYL PIPERAZINE LPXH
JRNL TITL 2 INHIBITORS.
JRNL REF BIOORG.CHEM. V. 102 04055 2020
JRNL REFN ISSN 0045-2068
JRNL PMID 32663666
JRNL DOI 10.1016/J.BIOORG.2020.104055
REMARK 2
REMARK 2 RESOLUTION. 1.85 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.17.1_3660
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.77
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 29704
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.162
REMARK 3 R VALUE (WORKING SET) : 0.160
REMARK 3 FREE R VALUE : 0.187
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1486
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 45.7700 - 4.1100 1.00 2688 141 0.1712 0.1938
REMARK 3 2 4.1100 - 3.2700 1.00 2595 137 0.1423 0.1712
REMARK 3 3 3.2600 - 2.8500 1.00 2569 135 0.1639 0.1838
REMARK 3 4 2.8500 - 2.5900 1.00 2577 136 0.1657 0.2167
REMARK 3 5 2.5900 - 2.4100 1.00 2556 135 0.1684 0.1982
REMARK 3 6 2.4100 - 2.2600 1.00 2573 135 0.1541 0.1592
REMARK 3 7 2.2600 - 2.1500 1.00 2511 132 0.1508 0.1928
REMARK 3 8 2.1500 - 2.0600 0.99 2545 134 0.1502 0.1854
REMARK 3 9 2.0600 - 1.9800 1.00 2539 134 0.1545 0.1713
REMARK 3 10 1.9800 - 1.9100 1.00 2529 133 0.1688 0.1938
REMARK 3 11 1.9100 - 1.8500 1.00 2536 134 0.1872 0.1981
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.156
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.301
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 26.34
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.60
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.007 2074
REMARK 3 ANGLE : 0.863 2831
REMARK 3 CHIRALITY : 0.056 299
REMARK 3 PLANARITY : 0.006 369
REMARK 3 DIHEDRAL : 20.631 740
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 8
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 38 )
REMARK 3 ORIGIN FOR THE GROUP (A): 8.5366 -46.8841 -10.0117
REMARK 3 T TENSOR
REMARK 3 T11: 0.1969 T22: 0.2358
REMARK 3 T33: 0.1882 T12: 0.0214
REMARK 3 T13: 0.0070 T23: -0.0182
REMARK 3 L TENSOR
REMARK 3 L11: 0.4348 L22: 0.6244
REMARK 3 L33: 0.4749 L12: 0.5595
REMARK 3 L13: -0.0873 L23: -0.1373
REMARK 3 S TENSOR
REMARK 3 S11: 0.0127 S12: 0.2272 S13: -0.0105
REMARK 3 S21: -0.1221 S22: -0.0562 S23: -0.1093
REMARK 3 S31: 0.0869 S32: 0.0881 S33: 0.0001
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 85 )
REMARK 3 ORIGIN FOR THE GROUP (A): -0.7719 -48.6042 -5.3107
REMARK 3 T TENSOR
REMARK 3 T11: 0.1915 T22: 0.2316
REMARK 3 T33: 0.2083 T12: 0.0036
REMARK 3 T13: -0.0032 T23: -0.0205
REMARK 3 L TENSOR
REMARK 3 L11: 0.4613 L22: 0.2556
REMARK 3 L33: 0.2355 L12: 0.3663
REMARK 3 L13: -0.1291 L23: 0.2083
REMARK 3 S TENSOR
REMARK 3 S11: -0.0057 S12: 0.0165 S13: 0.0015
REMARK 3 S21: 0.0305 S22: -0.0271 S23: 0.0455
REMARK 3 S31: 0.0301 S32: -0.1119 S33: 0.0000
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 105 )
REMARK 3 ORIGIN FOR THE GROUP (A): 3.4486 -47.1468 4.2359
REMARK 3 T TENSOR
REMARK 3 T11: 0.2322 T22: 0.2908
REMARK 3 T33: 0.2192 T12: -0.0230
REMARK 3 T13: 0.0185 T23: -0.0141
REMARK 3 L TENSOR
REMARK 3 L11: 0.2977 L22: 0.3962
REMARK 3 L33: 0.5148 L12: -0.1814
REMARK 3 L13: 0.0634 L23: -0.4623
REMARK 3 S TENSOR
REMARK 3 S11: 0.0252 S12: -0.3990 S13: -0.0963
REMARK 3 S21: 0.1299 S22: -0.1171 S23: 0.0600
REMARK 3 S31: -0.0378 S32: -0.0637 S33: -0.0001
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 122 )
REMARK 3 ORIGIN FOR THE GROUP (A): 8.8639 -33.1414 3.4000
REMARK 3 T TENSOR
REMARK 3 T11: 0.2576 T22: 0.2432
REMARK 3 T33: 0.3046 T12: -0.0192
REMARK 3 T13: -0.0154 T23: -0.0541
REMARK 3 L TENSOR
REMARK 3 L11: 0.1265 L22: 0.1347
REMARK 3 L33: 0.4976 L12: 0.1781
REMARK 3 L13: -0.2094 L23: -0.1541
REMARK 3 S TENSOR
REMARK 3 S11: -0.0248 S12: -0.1796 S13: 0.3230
REMARK 3 S21: 0.2026 S22: -0.0003 S23: -0.1144
REMARK 3 S31: -0.2325 S32: 0.0327 S33: 0.0001
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 145 )
REMARK 3 ORIGIN FOR THE GROUP (A): -12.8059 -36.4119 2.9469
REMARK 3 T TENSOR
REMARK 3 T11: 0.1615 T22: 0.3669
REMARK 3 T33: 0.3277 T12: -0.0347
REMARK 3 T13: 0.0585 T23: -0.1493
REMARK 3 L TENSOR
REMARK 3 L11: 0.4361 L22: 0.5183
REMARK 3 L33: 1.0590 L12: -0.0377
REMARK 3 L13: 0.2714 L23: 0.0787
REMARK 3 S TENSOR
REMARK 3 S11: 0.3349 S12: -0.7229 S13: 0.5319
REMARK 3 S21: 0.3578 S22: -0.4514 S23: 0.3804
REMARK 3 S31: 0.2212 S32: -0.1338 S33: 0.3086
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 158 )
REMARK 3 ORIGIN FOR THE GROUP (A): -16.3521 -40.2489 -10.3088
REMARK 3 T TENSOR
REMARK 3 T11: 0.2654 T22: 0.3718
REMARK 3 T33: 0.3196 T12: 0.0646
REMARK 3 T13: 0.0264 T23: -0.0274
REMARK 3 L TENSOR
REMARK 3 L11: 0.1276 L22: 0.2135
REMARK 3 L33: 0.1398 L12: -0.2085
REMARK 3 L13: 0.0002 L23: -0.0886
REMARK 3 S TENSOR
REMARK 3 S11: 0.1322 S12: 0.3927 S13: 0.1431
REMARK 3 S21: -0.5200 S22: -0.5586 S23: -0.1537
REMARK 3 S31: -0.1148 S32: -0.1143 S33: -0.0119
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 159 THROUGH 228 )
REMARK 3 ORIGIN FOR THE GROUP (A): 12.4892 -30.7951 -0.5023
REMARK 3 T TENSOR
REMARK 3 T11: 0.2088 T22: 0.2271
REMARK 3 T33: 0.2599 T12: -0.0148
REMARK 3 T13: -0.0094 T23: -0.0453
REMARK 3 L TENSOR
REMARK 3 L11: 1.1160 L22: 0.8599
REMARK 3 L33: 0.4865 L12: 0.7668
REMARK 3 L13: -0.5931 L23: -0.4808
REMARK 3 S TENSOR
REMARK 3 S11: 0.0593 S12: -0.0435 S13: 0.2928
REMARK 3 S21: -0.0143 S22: 0.0422 S23: 0.0428
REMARK 3 S31: -0.1054 S32: 0.0525 S33: 0.0001
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 229 THROUGH 249 )
REMARK 3 ORIGIN FOR THE GROUP (A): 19.5250 -43.2512 -17.6997
REMARK 3 T TENSOR
REMARK 3 T11: 0.1899 T22: 0.3247
REMARK 3 T33: 0.2376 T12: -0.0319
REMARK 3 T13: 0.0011 T23: -0.0206
REMARK 3 L TENSOR
REMARK 3 L11: 0.3882 L22: 0.3465
REMARK 3 L33: 0.1069 L12: -0.2107
REMARK 3 L13: -0.2464 L23: 0.1208
REMARK 3 S TENSOR
REMARK 3 S11: -0.0498 S12: 0.0778 S13: -0.1326
REMARK 3 S21: 0.0131 S22: -0.0385 S23: -0.0064
REMARK 3 S31: 0.0045 S32: -0.0059 S33: 0.0000
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6WII COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-20.
REMARK 100 THE DEPOSITION ID IS D_1000248271.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 14-JUN-19
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 5.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 24-ID-C
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29725
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850
REMARK 200 RESOLUTION RANGE LOW (A) : 46.290
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 10.97
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.8800
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 6PJ3
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 57.89
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 4 MG/ML OF LPXH, 0.27 MM JH-LPH-41, 10
REMARK 280 MM MES (PH 6.0), 100 MM NACL, 100 MM KCL, 50 MM SODIUM CITRATE
REMARK 280 (PH 5.5), 18.5% PENTAERYTHRITOL PROPOXYLATE (5/4 PO/OH), 0.5MM
REMARK 280 DTT, 1% DMSO, 2.5% GLYCEROL, VAPOR DIFFUSION, SITTING DROP,
REMARK 280 TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+2/3
REMARK 290 3555 -X+Y,-X,Z+1/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+1/3
REMARK 290 6555 -X,-X+Y,-Z+2/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.76667
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.88333
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 17.88333
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.76667
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 435 LIES ON A SPECIAL POSITION.
REMARK 375 HOH A 535 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 SER A 160
REMARK 465 LYS A 161
REMARK 465 ALA A 162
REMARK 465 ALA A 163
REMARK 465 ASN A 164
REMARK 465 SER A 165
REMARK 465 SER A 166
REMARK 465 LYS A 167
REMARK 465 SER A 168
REMARK 465 MET A 169
REMARK 465 HIS A 250
REMARK 465 HIS A 251
REMARK 465 HIS A 252
REMARK 465 HIS A 253
REMARK 465 HIS A 254
REMARK 465 HIS A 255
REMARK 465 HIS A 256
REMARK 465 HIS A 257
REMARK 465 HIS A 258
REMARK 465 HIS A 259
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLN A 27 CD OE1 NE2
REMARK 470 GLN A 123 CG CD OE1 NE2
REMARK 470 LYS A 131 CE NZ
REMARK 470 ARG A 151 NE CZ NH1 NH2
REMARK 470 ASP A 159 CG OD1 OD2
REMARK 470 GLU A 170 CG CD OE1 OE2
REMARK 470 GLN A 177 CG CD OE1 NE2
REMARK 470 GLU A 242 CD OE1 OE2
REMARK 470 LEU A 245 CD1 CD2
REMARK 470 GLN A 248 CG CD OE1 NE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LEU A 39 46.47 -92.98
REMARK 500 HIS A 195 -48.53 71.37
REMARK 500 HIS A 220 -60.52 -93.40
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MN A 302 MN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 8 OD1
REMARK 620 2 HIS A 10 NE2 116.6
REMARK 620 3 ASP A 41 OD2 81.4 96.0
REMARK 620 4 HIS A 197 NE2 106.3 91.3 165.6
REMARK 620 5 HOH A 448 O 102.8 135.8 69.9 96.3
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MN A 303 MN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 41 OD2
REMARK 620 2 ASN A 79 OD1 86.8
REMARK 620 3 HIS A 114 NE2 96.5 93.4
REMARK 620 4 HIS A 195 ND1 173.5 94.1 89.9
REMARK 620 5 HOH A 448 O 76.9 126.7 138.2 97.5
REMARK 620 N 1 2 3 4
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue U2V A 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 303
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 304
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 305
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 306
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 307
DBREF1 6WII A 1 240 UNP A0A1S0WIC1_KLEPN
DBREF2 6WII A A0A1S0WIC1 1 240
SEQADV 6WII LEU A 241 UNP A0A1S0WIC EXPRESSION TAG
SEQADV 6WII GLU A 242 UNP A0A1S0WIC EXPRESSION TAG
SEQADV 6WII GLU A 243 UNP A0A1S0WIC EXPRESSION TAG
SEQADV 6WII ASN A 244 UNP A0A1S0WIC EXPRESSION TAG
SEQADV 6WII LEU A 245 UNP A0A1S0WIC EXPRESSION TAG
SEQADV 6WII TYR A 246 UNP A0A1S0WIC EXPRESSION TAG
SEQADV 6WII PHE A 247 UNP A0A1S0WIC EXPRESSION TAG
SEQADV 6WII GLN A 248 UNP A0A1S0WIC EXPRESSION TAG
SEQADV 6WII SER A 249 UNP A0A1S0WIC EXPRESSION TAG
SEQADV 6WII HIS A 250 UNP A0A1S0WIC EXPRESSION TAG
SEQADV 6WII HIS A 251 UNP A0A1S0WIC EXPRESSION TAG
SEQADV 6WII HIS A 252 UNP A0A1S0WIC EXPRESSION TAG
SEQADV 6WII HIS A 253 UNP A0A1S0WIC EXPRESSION TAG
SEQADV 6WII HIS A 254 UNP A0A1S0WIC EXPRESSION TAG
SEQADV 6WII HIS A 255 UNP A0A1S0WIC EXPRESSION TAG
SEQADV 6WII HIS A 256 UNP A0A1S0WIC EXPRESSION TAG
SEQADV 6WII HIS A 257 UNP A0A1S0WIC EXPRESSION TAG
SEQADV 6WII HIS A 258 UNP A0A1S0WIC EXPRESSION TAG
SEQADV 6WII HIS A 259 UNP A0A1S0WIC EXPRESSION TAG
SEQRES 1 A 259 MET ALA THR LEU PHE ILE ALA ASP LEU HIS LEU GLN THR
SEQRES 2 A 259 GLU GLU PRO ALA ILE THR ALA GLY PHE LEU ARG PHE LEU
SEQRES 3 A 259 GLN GLY GLU ALA ARG GLN ALA ASP ALA LEU TYR ILE LEU
SEQRES 4 A 259 GLY ASP LEU PHE GLU ALA TRP ILE GLY ASP ASP ASP PRO
SEQRES 5 A 259 ASN PRO LEU HIS GLN GLN ILE ALA SER ALA ILE LYS ALA
SEQRES 6 A 259 VAL VAL ASP ALA GLY VAL PRO CYS TYR PHE ILE HIS GLY
SEQRES 7 A 259 ASN ARG ASP PHE LEU VAL GLY GLN ARG PHE ALA ARG GLN
SEQRES 8 A 259 SER GLY MET ILE LEU LEU ALA GLU GLU GLU ARG LEU ASP
SEQRES 9 A 259 LEU TYR GLY ARG GLU VAL LEU ILE MET HIS GLY ASP THR
SEQRES 10 A 259 LEU CYS THR ASP ASP GLN GLY TYR LEU ALA PHE ARG ALA
SEQRES 11 A 259 LYS VAL HIS THR PRO TRP ILE GLN ARG LEU PHE LEU ALA
SEQRES 12 A 259 LEU PRO LEU PHE ILE ARG HIS ARG ILE ALA ALA ARG MET
SEQRES 13 A 259 ARG ALA ASP SER LYS ALA ALA ASN SER SER LYS SER MET
SEQRES 14 A 259 GLU ILE MET ASP VAL ASN PRO GLN ALA VAL VAL ASP ALA
SEQRES 15 A 259 MET GLU ARG HIS HIS VAL GLN TRP LEU ILE HIS GLY HIS
SEQRES 16 A 259 THR HIS ARG PRO ALA VAL HIS GLU LEU GLN ALA ASN GLY
SEQRES 17 A 259 GLN PRO ALA TRP ARG VAL VAL LEU GLY ALA TRP HIS SER
SEQRES 18 A 259 GLU GLY SER MET VAL LYS VAL THR PRO ASP ASP VAL GLU
SEQRES 19 A 259 LEU ILE HIS PHE PRO PHE LEU GLU GLU ASN LEU TYR PHE
SEQRES 20 A 259 GLN SER HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS
HET U2V A 301 38
HET MN A 302 1
HET MN A 303 1
HET DMS A 304 4
HET DMS A 305 4
HET DMS A 306 4
HET GOL A 307 12
HETNAM U2V 5-({[4-({4-[3-CHLORO-5-(TRIFLUOROMETHYL)
HETNAM 2 U2V PHENYL]PIPERAZIN-1-YL}SULFONYL)
HETNAM 3 U2V PHENYL]CARBAMOYL}AMINO)-N-HYDROXYPENTANAMIDE
HETNAM MN MANGANESE (II) ION
HETNAM DMS DIMETHYL SULFOXIDE
HETNAM GOL GLYCEROL
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 2 U2V C23 H27 CL F3 N5 O5 S
FORMUL 3 MN 2(MN 2+)
FORMUL 5 DMS 3(C2 H6 O S)
FORMUL 8 GOL C3 H8 O3
FORMUL 9 HOH *152(H2 O)
HELIX 1 AA1 GLU A 15 GLY A 28 1 14
HELIX 2 AA2 GLU A 29 ALA A 33 5 5
HELIX 3 AA3 ASN A 53 ALA A 69 1 17
HELIX 4 AA4 GLY A 85 GLY A 93 1 9
HELIX 5 AA5 GLY A 115 CYS A 119 5 5
HELIX 6 AA6 ASP A 122 HIS A 133 1 12
HELIX 7 AA7 THR A 134 LEU A 144 1 11
HELIX 8 AA8 PRO A 145 ASP A 159 1 15
HELIX 9 AA9 ASN A 175 HIS A 186 1 12
SHEET 1 AA1 6 ILE A 95 LEU A 96 0
SHEET 2 AA1 6 CYS A 73 PHE A 75 1 N PHE A 75 O ILE A 95
SHEET 3 AA1 6 ALA A 35 ILE A 38 1 N ILE A 38 O TYR A 74
SHEET 4 AA1 6 THR A 3 ILE A 6 1 N LEU A 4 O TYR A 37
SHEET 5 AA1 6 GLY A 223 VAL A 228 -1 O VAL A 228 N THR A 3
SHEET 6 AA1 6 VAL A 233 PHE A 238 -1 O ILE A 236 N MET A 225
SHEET 1 AA2 5 GLU A 100 LEU A 105 0
SHEET 2 AA2 5 ARG A 108 MET A 113 -1 O ARG A 108 N LEU A 105
SHEET 3 AA2 5 TRP A 190 HIS A 193 1 O TRP A 190 N LEU A 111
SHEET 4 AA2 5 GLN A 209 VAL A 215 1 O VAL A 214 N LEU A 191
SHEET 5 AA2 5 ALA A 200 ALA A 206 -1 N LEU A 204 O ALA A 211
LINK OD1 ASP A 8 MN MN A 302 1555 1555 2.03
LINK NE2 HIS A 10 MN MN A 302 1555 1555 2.23
LINK OD2 ASP A 41 MN MN A 302 1555 1555 2.69
LINK OD2 ASP A 41 MN MN A 303 1555 1555 2.18
LINK OD1 ASN A 79 MN MN A 303 1555 1555 1.92
LINK NE2 HIS A 114 MN MN A 303 1555 1555 2.23
LINK ND1 HIS A 195 MN MN A 303 1555 1555 2.16
LINK NE2 HIS A 197 MN MN A 302 1555 1555 2.34
LINK MN MN A 302 O HOH A 448 1555 1555 1.87
LINK MN MN A 303 O HOH A 448 1555 1555 2.16
SITE 1 AC1 16 ALA A 45 TRP A 46 ASN A 79 ARG A 80
SITE 2 AC1 16 LEU A 83 CYS A 119 ASP A 122 TYR A 125
SITE 3 AC1 16 GLN A 138 PHE A 141 ILE A 152 ALA A 153
SITE 4 AC1 16 ARG A 157 MET A 172 HIS A 195 DMS A 304
SITE 1 AC2 6 ASP A 8 HIS A 10 ASP A 41 HIS A 197
SITE 2 AC2 6 MN A 303 HOH A 448
SITE 1 AC3 7 ASP A 8 ASP A 41 ASN A 79 HIS A 114
SITE 2 AC3 7 HIS A 195 MN A 302 HOH A 448
SITE 1 AC4 2 PHE A 128 U2V A 301
SITE 1 AC5 7 ARG A 24 GLU A 29 MET A 225 ASP A 232
SITE 2 AC5 7 PHE A 238 HOH A 404 HOH A 486
SITE 1 AC6 5 ALA A 45 ASP A 51 ASN A 53 HIS A 150
SITE 2 AC6 5 HOH A 401
SITE 1 AC7 9 THR A 3 ASP A 34 ASP A 104 LEU A 105
SITE 2 AC7 9 TYR A 106 PHE A 147 HOH A 408 HOH A 416
SITE 3 AC7 9 HOH A 450
CRYST1 105.710 105.710 53.650 90.00 90.00 120.00 P 32 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009460 0.005462 0.000000 0.00000
SCALE2 0.000000 0.010923 0.000000 0.00000
SCALE3 0.000000 0.000000 0.018639 0.00000