HEADER VIRAL PROTEIN 10-APR-20 6WIJ TITLE THE CRYSTAL STRUCTURE OF THE 2009/H1N1/CALIFORNIA PA ENDONUCLEASE TITLE 2 MUTANT I38T IN COMPLEX WITH SJ000986448 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS, INFLUENZA A VIRUS SOURCE 3 (A/LUXEMBOURG/43/2009(H1N1)); SOURCE 4 ORGANISM_TAXID: 11320, 655278; SOURCE 5 STRAIN: A/LUXEMBOURG/43/2009(H1N1); SOURCE 6 GENE: PA-X, PA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEASE, INFLUENZA, INHIBITOR RESISTANCE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,P.J.SLAVISH,Z.RANKOVIC,S.W.WHITE REVDAT 3 25-OCT-23 6WIJ 1 REMARK REVDAT 2 29-MAR-23 6WIJ 1 JRNL REVDAT 1 14-APR-21 6WIJ 0 JRNL AUTH P.J.SLAVISH,M.G.CUYPERS,M.A.RIMMER,A.ABDOLVAHABI,T.JEEVAN, JRNL AUTH 2 G.KUMAR,J.A.JARUSIEWICZ,S.VAITHIYALINGAM,J.C.JONES, JRNL AUTH 3 J.J.BOWLING,J.E.PRICE,R.M.DUBOIS,J.MIN,R.J.WEBBY,Z.RANKOVIC, JRNL AUTH 4 S.W.WHITE JRNL TITL CHEMICAL SCAFFOLD RECYCLING: STRUCTURE-GUIDED CONVERSION OF JRNL TITL 2 AN HIV INTEGRASE INHIBITOR INTO A POTENT INFLUENZA VIRUS JRNL TITL 3 RNA-DEPENDENT RNA POLYMERASE INHIBITOR DESIGNED TO MINIMIZE JRNL TITL 4 RESISTANCE POTENTIAL. JRNL REF EUR.J.MED.CHEM. V. 247 15035 2023 JRNL REFN ISSN 0223-5234 JRNL PMID 36603507 JRNL DOI 10.1016/J.EJMECH.2022.115035 REMARK 2 REMARK 2 RESOLUTION. 2.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10430 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 74.2700 - 3.8800 1.00 2606 127 0.1958 0.2369 REMARK 3 2 3.8700 - 3.0700 1.00 2450 134 0.2245 0.2807 REMARK 3 3 3.0700 - 2.6900 1.00 2463 102 0.2651 0.3398 REMARK 3 4 2.6900 - 2.4400 1.00 2381 167 0.2667 0.3121 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -3 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.6892 -28.2188 -3.0364 REMARK 3 T TENSOR REMARK 3 T11: 0.7969 T22: 0.8035 REMARK 3 T33: 0.6985 T12: -0.0336 REMARK 3 T13: -0.0306 T23: 0.2035 REMARK 3 L TENSOR REMARK 3 L11: 4.7260 L22: 3.0833 REMARK 3 L33: 6.1967 L12: 1.2288 REMARK 3 L13: -1.4425 L23: 3.4581 REMARK 3 S TENSOR REMARK 3 S11: -0.0930 S12: -0.3632 S13: -0.1868 REMARK 3 S21: 1.6344 S22: 0.6658 S23: 0.2883 REMARK 3 S31: 0.8669 S32: 0.4486 S33: -0.4296 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8223 -40.8419 -5.0112 REMARK 3 T TENSOR REMARK 3 T11: 0.9127 T22: 0.9497 REMARK 3 T33: 0.7569 T12: 0.1111 REMARK 3 T13: -0.0557 T23: 0.1547 REMARK 3 L TENSOR REMARK 3 L11: 3.2814 L22: 2.8156 REMARK 3 L33: 3.4442 L12: 0.7288 REMARK 3 L13: 2.8051 L23: -0.6390 REMARK 3 S TENSOR REMARK 3 S11: 1.0772 S12: 0.4497 S13: -0.3297 REMARK 3 S21: 1.6174 S22: -0.9791 S23: -0.4281 REMARK 3 S31: 0.6678 S32: 0.6344 S33: -0.0430 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.0496 -36.5908 -3.1544 REMARK 3 T TENSOR REMARK 3 T11: 0.9212 T22: 1.5108 REMARK 3 T33: 0.9754 T12: 0.3217 REMARK 3 T13: -0.3721 T23: 0.1799 REMARK 3 L TENSOR REMARK 3 L11: 4.8971 L22: 7.2749 REMARK 3 L33: 3.1047 L12: 2.8773 REMARK 3 L13: 3.2906 L23: 0.4233 REMARK 3 S TENSOR REMARK 3 S11: 0.4173 S12: 0.0161 S13: -1.3695 REMARK 3 S21: -0.0275 S22: 0.5078 S23: -0.7616 REMARK 3 S31: 0.3222 S32: 2.1360 S33: -0.9489 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3869 -36.2140 -14.4964 REMARK 3 T TENSOR REMARK 3 T11: 0.5147 T22: 0.5251 REMARK 3 T33: 0.7067 T12: -0.0584 REMARK 3 T13: 0.0653 T23: 0.1984 REMARK 3 L TENSOR REMARK 3 L11: 4.1916 L22: 3.1151 REMARK 3 L33: 8.9615 L12: -0.4132 REMARK 3 L13: 3.4996 L23: 4.0484 REMARK 3 S TENSOR REMARK 3 S11: -0.1675 S12: -0.3209 S13: 0.3331 REMARK 3 S21: 0.1993 S22: -0.1348 S23: 0.5153 REMARK 3 S31: 0.8218 S32: -0.2371 S33: 0.1787 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.0538 -52.5443 -19.1501 REMARK 3 T TENSOR REMARK 3 T11: 0.6786 T22: 0.7309 REMARK 3 T33: 0.7019 T12: 0.1125 REMARK 3 T13: 0.1924 T23: 0.1771 REMARK 3 L TENSOR REMARK 3 L11: 8.0872 L22: 7.8480 REMARK 3 L33: 3.6006 L12: 0.5348 REMARK 3 L13: -0.7934 L23: -2.9356 REMARK 3 S TENSOR REMARK 3 S11: -0.6738 S12: 0.4443 S13: -0.7112 REMARK 3 S21: -0.1278 S22: 0.2321 S23: 0.4291 REMARK 3 S31: 0.2691 S32: 0.8143 S33: 0.5903 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9851 -44.6326 -24.8223 REMARK 3 T TENSOR REMARK 3 T11: 0.5691 T22: 0.8083 REMARK 3 T33: 0.5852 T12: -0.0994 REMARK 3 T13: 0.1662 T23: 0.1995 REMARK 3 L TENSOR REMARK 3 L11: 4.5409 L22: 4.9582 REMARK 3 L33: 3.0839 L12: -1.2552 REMARK 3 L13: -1.1543 L23: 0.9613 REMARK 3 S TENSOR REMARK 3 S11: -0.5298 S12: 0.7908 S13: 0.1115 REMARK 3 S21: -0.9472 S22: 0.3982 S23: -0.3816 REMARK 3 S31: -0.4432 S32: 0.7492 S33: -0.0345 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 108 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8804 -35.2193 -27.3426 REMARK 3 T TENSOR REMARK 3 T11: 0.9229 T22: 1.4049 REMARK 3 T33: 0.9310 T12: -0.2974 REMARK 3 T13: 0.2742 T23: 0.1009 REMARK 3 L TENSOR REMARK 3 L11: 6.0967 L22: 6.2342 REMARK 3 L33: 3.2922 L12: -3.1824 REMARK 3 L13: 4.2746 L23: -1.0867 REMARK 3 S TENSOR REMARK 3 S11: 0.8323 S12: -0.5624 S13: 2.4186 REMARK 3 S21: -0.7267 S22: -0.4359 S23: -2.1400 REMARK 3 S31: 0.3639 S32: -0.7854 S33: -0.0833 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.4996 -40.1491 -28.1515 REMARK 3 T TENSOR REMARK 3 T11: 0.7797 T22: 0.8216 REMARK 3 T33: 0.7093 T12: -0.1361 REMARK 3 T13: 0.1944 T23: 0.2282 REMARK 3 L TENSOR REMARK 3 L11: 4.9680 L22: 5.5975 REMARK 3 L33: 5.3276 L12: -2.3331 REMARK 3 L13: -2.0264 L23: 5.2987 REMARK 3 S TENSOR REMARK 3 S11: -0.9229 S12: 0.2397 S13: -0.0385 REMARK 3 S21: 0.0275 S22: 1.3259 S23: 0.2684 REMARK 3 S31: 1.0378 S32: -0.6887 S33: -0.5297 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.1193 -34.2144 -30.1759 REMARK 3 T TENSOR REMARK 3 T11: 0.7583 T22: 1.1582 REMARK 3 T33: 0.8171 T12: -0.1064 REMARK 3 T13: 0.0642 T23: 0.2682 REMARK 3 L TENSOR REMARK 3 L11: 2.8724 L22: 9.3252 REMARK 3 L33: 4.3951 L12: -1.3820 REMARK 3 L13: 0.7219 L23: 5.7044 REMARK 3 S TENSOR REMARK 3 S11: 0.3857 S12: 0.4701 S13: 0.2364 REMARK 3 S21: -0.3106 S22: -0.5567 S23: -0.5554 REMARK 3 S31: -0.0383 S32: -0.2893 S33: 0.2439 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.1832 -24.9792 -16.6740 REMARK 3 T TENSOR REMARK 3 T11: 0.6876 T22: 0.7420 REMARK 3 T33: 0.7695 T12: -0.3168 REMARK 3 T13: -0.0758 T23: 0.3551 REMARK 3 L TENSOR REMARK 3 L11: 0.7908 L22: 7.7664 REMARK 3 L33: 7.9665 L12: -1.0831 REMARK 3 L13: 1.2659 L23: 4.1607 REMARK 3 S TENSOR REMARK 3 S11: -0.3448 S12: -0.1529 S13: 0.2261 REMARK 3 S21: 0.1171 S22: 0.1227 S23: -0.1216 REMARK 3 S31: -1.0435 S32: 0.6179 S33: 0.0877 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DATA MERGED FROM 4 INDEPENDANT CRYSTALS REMARK 3 WITH CCP4/BLEND THEN SCALED WITH AIMLESS. REMARK 4 REMARK 4 6WIJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000248241. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10430 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.440 REMARK 200 RESOLUTION RANGE LOW (A) : 74.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.90 REMARK 200 R MERGE (I) : 0.20800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.60 REMARK 200 R MERGE FOR SHELL (I) : 1.46400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5VPT REMARK 200 REMARK 200 REMARK: ELONGATED ROD. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1 M AMMONIUM REMARK 280 SULFATE, 10 MM MNCL2, 10 MM MGCL2, 0.5% PVP K15, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.78200 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.78200 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.44450 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 44.78200 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 44.78200 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 66.44450 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.78200 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 44.78200 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 66.44450 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 44.78200 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.78200 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 66.44450 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 44.78200 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.78200 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 66.44450 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.78200 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.78200 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.44450 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 44.78200 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 44.78200 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.44450 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.78200 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.78200 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.44450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A -3 NE CZ NH1 NH2 REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 GLU A 31 CD OE1 OE2 REMARK 470 LYS A 34 CE NZ REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 ARG A 84 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LYS A 113 CE NZ REMARK 470 LEU A 132 CG CD1 CD2 REMARK 470 LYS A 134 CD CE NZ REMARK 470 ASN A 136 CG OD1 ND2 REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 ILE A 138 CG1 CG2 CD1 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 MET A 155 CE REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 GLN A 193 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 30 -63.36 -100.72 REMARK 500 SER A 53 -85.20 -77.44 REMARK 500 LYS A 73 -40.63 -155.11 REMARK 500 GLU A 141 -117.26 53.14 REMARK 500 LYS A 142 -82.24 22.56 REMARK 500 THR A 162 -69.11 64.46 REMARK 500 ASP A 164 158.84 -47.48 REMARK 500 SER A 194 -20.42 -143.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 QQ4 A 204 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 92.6 REMARK 620 3 GLU A 119 OE2 175.4 91.6 REMARK 620 4 ILE A 120 O 82.9 86.8 95.5 REMARK 620 5 U3A A 203 O13 93.9 98.5 87.3 174.0 REMARK 620 6 U3A A 203 O15 84.9 176.5 90.8 90.4 84.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE2 REMARK 620 2 ASP A 108 OD1 81.6 REMARK 620 3 U3A A 203 O13 131.1 87.5 REMARK 620 4 U3A A 203 O10 104.1 163.6 77.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue U3A A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QQ4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VPT RELATED DB: PDB DBREF1 6WIJ A 1 50 UNP A0A481PFF5_9INFA DBREF2 6WIJ A A0A481PFF5 1 50 DBREF 6WIJ A 74 196 UNP C6H0Y9 C6H0Y9_9INFA 74 196 SEQADV 6WIJ MET A -19 UNP A0A481PFF EXPRESSION TAG SEQADV 6WIJ GLY A -18 UNP A0A481PFF EXPRESSION TAG SEQADV 6WIJ SER A -17 UNP A0A481PFF EXPRESSION TAG SEQADV 6WIJ SER A -16 UNP A0A481PFF EXPRESSION TAG SEQADV 6WIJ HIS A -15 UNP A0A481PFF EXPRESSION TAG SEQADV 6WIJ HIS A -14 UNP A0A481PFF EXPRESSION TAG SEQADV 6WIJ HIS A -13 UNP A0A481PFF EXPRESSION TAG SEQADV 6WIJ HIS A -12 UNP A0A481PFF EXPRESSION TAG SEQADV 6WIJ HIS A -11 UNP A0A481PFF EXPRESSION TAG SEQADV 6WIJ HIS A -10 UNP A0A481PFF EXPRESSION TAG SEQADV 6WIJ SER A -9 UNP A0A481PFF EXPRESSION TAG SEQADV 6WIJ SER A -8 UNP A0A481PFF EXPRESSION TAG SEQADV 6WIJ GLY A -7 UNP A0A481PFF EXPRESSION TAG SEQADV 6WIJ LEU A -6 UNP A0A481PFF EXPRESSION TAG SEQADV 6WIJ VAL A -5 UNP A0A481PFF EXPRESSION TAG SEQADV 6WIJ PRO A -4 UNP A0A481PFF EXPRESSION TAG SEQADV 6WIJ ARG A -3 UNP A0A481PFF EXPRESSION TAG SEQADV 6WIJ GLY A -2 UNP A0A481PFF EXPRESSION TAG SEQADV 6WIJ SER A -1 UNP A0A481PFF EXPRESSION TAG SEQADV 6WIJ HIS A 0 UNP A0A481PFF EXPRESSION TAG SEQADV 6WIJ THR A 38 UNP A0A481PFF ILE 38 ENGINEERED MUTATION SEQADV 6WIJ GLY A 51 UNP A0A481PFF LINKER SEQADV 6WIJ GLY A 52 UNP A0A481PFF LINKER SEQADV 6WIJ SER A 53 UNP A0A481PFF LINKER SEQADV 6WIJ LYS A 73 UNP A0A481PFF LINKER SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA THR CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE GLU ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG HET MN A 201 1 HET MN A 202 1 HET U3A A 203 31 HET QQ4 A 204 34 HET SO4 A 205 5 HET SO4 A 206 5 HETNAM MN MANGANESE (II) ION HETNAM U3A 5-HYDROXY-N-[2-(2-METHOXYPYRIDIN-4-YL)ETHYL]-6-OXO-2- HETNAM 2 U3A [2-(TRIFLUOROMETHYL)PHENYL]-3,6-DIHYDROPYRIMIDINE-4- HETNAM 3 U3A CARBOXAMIDE HETNAM QQ4 HEXA VINYLPYRROLIDONE K15 HETNAM SO4 SULFATE ION HETSYN QQ4 1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-DODECANE- HETSYN 2 QQ4 1,3,5,7,9,11-HEXAYL]HEXA(PYRROLIDIN-2-ONE) FORMUL 2 MN 2(MN 2+) FORMUL 4 U3A C20 H17 F3 N4 O4 FORMUL 5 QQ4 C36 H56 N6 O6 FORMUL 6 SO4 2(O4 S 2-) FORMUL 8 HOH *23(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 ASP A 50 1 20 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 LYS A 139 1 14 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 GLN A 193 1 7 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O HIS A 144 N PHE A 117 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 201 1555 1555 2.43 LINK OE2 GLU A 80 MN MN A 202 1555 1555 2.25 LINK OD2 ASP A 108 MN MN A 201 1555 1555 2.33 LINK OD1 ASP A 108 MN MN A 202 1555 1555 2.30 LINK OE2 GLU A 119 MN MN A 201 1555 1555 2.19 LINK O ILE A 120 MN MN A 201 1555 1555 2.17 LINK MN MN A 201 O13 U3A A 203 1555 1555 2.39 LINK MN MN A 201 O15 U3A A 203 1555 1555 1.83 LINK MN MN A 202 O13 U3A A 203 1555 1555 1.98 LINK MN MN A 202 O10 U3A A 203 1555 1555 2.57 SITE 1 AC1 5 HIS A 41 ASP A 108 GLU A 119 ILE A 120 SITE 2 AC1 5 U3A A 203 SITE 1 AC2 3 GLU A 80 ASP A 108 U3A A 203 SITE 1 AC3 12 TYR A 24 GLU A 26 ALA A 37 THR A 38 SITE 2 AC3 12 HIS A 41 ASP A 108 GLU A 119 ILE A 120 SITE 3 AC3 12 MN A 201 MN A 202 HOH A 301 HOH A 306 SITE 1 AC4 4 MET A 12 PHE A 46 ILE A 78 GLY A 81 SITE 1 AC5 3 SER A 53 ARG A 75 LYS A 113 SITE 1 AC6 4 GLU A 31 THR A 32 ASN A 33 LYS A 34 CRYST1 89.564 89.564 132.889 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011165 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011165 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007525 0.00000