HEADER ANTIMICROBIAL PROTEIN 10-APR-20 6WIN TITLE TYPE 6 SECRETION AMIDASE EFFECTOR 2 (TAE2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE 6 SECRETION AMIDASE EFFECTOR 2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHI; SOURCE 3 ORGANISM_TAXID: 90370; SOURCE 4 GENE: STY0300, T2586; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS AMIDASE, TOXIN, PEPTIDOGLYCAN HYDROLASE, ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.CHOU,A.D.RADKOV REVDAT 2 05-MAY-21 6WIN 1 JRNL REVDAT 1 22-APR-20 6WIN 0 JRNL AUTH B.M.HAYES,A.D.RADKOV,F.YARZA,S.FLORES,J.KIM,Z.ZHAO,K.W.LEXA, JRNL AUTH 2 L.MARNIN,J.BIBOY,V.BOWCUT,W.VOLLMER,J.H.F.PEDRA,S.CHOU JRNL TITL TICKS RESIST SKIN COMMENSALS WITH IMMUNE FACTOR OF BACTERIAL JRNL TITL 2 ORIGIN. JRNL REF CELL V. 183 1562 2020 JRNL REFN ISSN 1097-4172 JRNL PMID 33306955 JRNL DOI 10.1016/J.CELL.2020.10.042 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.320 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 7120 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 712 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.6500 - 3.5100 1.00 1336 149 0.1558 0.1831 REMARK 3 2 3.5000 - 2.7800 1.00 1289 144 0.1810 0.2335 REMARK 3 3 2.7800 - 2.4300 1.00 1303 144 0.1883 0.2618 REMARK 3 4 2.4300 - 2.2100 1.00 1284 143 0.1858 0.2351 REMARK 3 5 2.2100 - 2.0500 0.92 1196 132 0.1949 0.2881 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.231 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1140 REMARK 3 ANGLE : 0.811 1549 REMARK 3 CHIRALITY : 0.056 159 REMARK 3 PLANARITY : 0.004 206 REMARK 3 DIHEDRAL : 29.637 153 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WIN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000246649. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 91 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ELVES REMARK 200 DATA SCALING SOFTWARE : ELVES REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9246 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 46.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 70.4 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 5.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.98900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M SODIUM CITRATE 0.1M MES PH 6.6 4% REMARK 280 FORMAMIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.01600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 9 CG CD CE NZ REMARK 470 CYS A 23 SG REMARK 470 LYS A 49 CB CG CD CE NZ REMARK 470 LYS A 92 CG CD CE NZ DBREF 6WIN A 2 133 UNP Q8Z969 Q8Z969_SALTI 2 133 SEQADV 6WIN ALA A 1 UNP Q8Z969 EXPRESSION TAG SEQADV 6WIN LEU A 134 UNP Q8Z969 EXPRESSION TAG SEQADV 6WIN GLU A 135 UNP Q8Z969 EXPRESSION TAG SEQADV 6WIN HIS A 136 UNP Q8Z969 EXPRESSION TAG SEQADV 6WIN HIS A 137 UNP Q8Z969 EXPRESSION TAG SEQADV 6WIN HIS A 138 UNP Q8Z969 EXPRESSION TAG SEQADV 6WIN HIS A 139 UNP Q8Z969 EXPRESSION TAG SEQADV 6WIN HIS A 140 UNP Q8Z969 EXPRESSION TAG SEQRES 1 A 140 ALA PRO TYR VAL TYR ALA ASN ALA LYS ALA LEU GLN ASP SEQRES 2 A 140 THR GLU LYS VAL GLY ASN HIS HIS GLN CYS VAL GLU LEU SEQRES 3 A 140 ILE GLN HIS TYR ILE ARG VAL GLY GLN ALA SER THR TRP SEQRES 4 A 140 GLN GLN GLY ALA ALA VAL PHE GLY ASN LYS ASN ILE GLU SEQRES 5 A 140 VAL GLY THR VAL ILE ALA THR PHE VAL ASN GLY ARG TYR SEQRES 6 A 140 PRO ASN HIS ASN SER GLY ASN HIS ALA ALA PHE PHE LEU SEQRES 7 A 140 GLY GLN ASP THR GLY GLY ILE TRP VAL MSE ASP GLN TRP SEQRES 8 A 140 LYS ASP ASP ILE ALA LYS PRO ARG VAL SER LYS ARG TYR SEQRES 9 A 140 ILE ARG LYS LEU HIS ASN GLY SER VAL ARG SER ASP GLY SEQRES 10 A 140 THR TYR ILE ARG MSE SER ASN ASN ALA GLU ALA TYR PHE SEQRES 11 A 140 ILE VAL GLU LEU GLU HIS HIS HIS HIS HIS MODRES 6WIN MSE A 88 MET MODIFIED RESIDUE MODRES 6WIN MSE A 122 MET MODIFIED RESIDUE HET MSE A 88 8 HET MSE A 122 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 HOH *87(H2 O) HELIX 1 AA1 ASN A 7 GLN A 12 5 6 HELIX 2 AA2 GLN A 22 ILE A 31 1 10 HELIX 3 AA3 GLN A 35 TRP A 39 5 5 HELIX 4 AA4 ARG A 121 GLU A 127 5 7 SHEET 1 AA1 6 GLN A 40 ALA A 44 0 SHEET 2 AA1 6 TYR A 129 GLU A 133 -1 O GLU A 133 N GLN A 40 SHEET 3 AA1 6 VAL A 56 THR A 59 -1 N ALA A 58 O PHE A 130 SHEET 4 AA1 6 ALA A 74 ASP A 81 -1 O ALA A 75 N ILE A 57 SHEET 5 AA1 6 GLY A 84 ASP A 89 -1 O TRP A 86 N GLY A 79 SHEET 6 AA1 6 SER A 101 ARG A 106 -1 O ILE A 105 N ILE A 85 LINK C VAL A 87 N MSE A 88 1555 1555 1.33 LINK C MSE A 88 N ASP A 89 1555 1555 1.34 LINK C ARG A 121 N MSE A 122 1555 1555 1.33 LINK C MSE A 122 N SER A 123 1555 1555 1.34 CRYST1 33.318 46.032 38.923 90.00 104.71 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030014 0.000000 0.007881 0.00000 SCALE2 0.000000 0.021724 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026563 0.00000