HEADER VIRAL PROTEIN 11-APR-20 6WJ4 TITLE THE CRYSTAL STRUCTURE OF THE 2009/H1N1/CALIFORNIA PA ENDONUCLEASE WILD TITLE 2 TYPE IN COMPLEX WITH SJ000986448 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS, INFLUENZA A VIRUS SOURCE 3 (A/LUXEMBOURG/43/2009(H1N1)); SOURCE 4 ORGANISM_TAXID: 11320, 655278; SOURCE 5 STRAIN: A/LUXEMBOURG/43/2009(H1N1); SOURCE 6 GENE: PA-X, PA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEASE, INFLUENZA, INHIBITOR RESISTANCE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,P.J.SLAVISH,Z.RANKOVIC,S.W.WHITE REVDAT 3 25-OCT-23 6WJ4 1 REMARK REVDAT 2 29-MAR-23 6WJ4 1 JRNL REVDAT 1 14-APR-21 6WJ4 0 JRNL AUTH P.J.SLAVISH,M.G.CUYPERS,M.A.RIMMER,A.ABDOLVAHABI,T.JEEVAN, JRNL AUTH 2 G.KUMAR,J.A.JARUSIEWICZ,S.VAITHIYALINGAM,J.C.JONES, JRNL AUTH 3 J.J.BOWLING,J.E.PRICE,R.M.DUBOIS,J.MIN,R.J.WEBBY,Z.RANKOVIC, JRNL AUTH 4 S.W.WHITE JRNL TITL CHEMICAL SCAFFOLD RECYCLING: STRUCTURE-GUIDED CONVERSION OF JRNL TITL 2 AN HIV INTEGRASE INHIBITOR INTO A POTENT INFLUENZA VIRUS JRNL TITL 3 RNA-DEPENDENT RNA POLYMERASE INHIBITOR DESIGNED TO MINIMIZE JRNL TITL 4 RESISTANCE POTENTIAL. JRNL REF EUR.J.MED.CHEM. V. 247 15035 2023 JRNL REFN ISSN 0223-5234 JRNL PMID 36603507 JRNL DOI 10.1016/J.EJMECH.2022.115035 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 9095 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 63.7000 - 3.6800 0.99 2999 163 0.1990 0.2395 REMARK 3 2 3.6800 - 2.9200 0.99 2859 149 0.2621 0.3149 REMARK 3 3 2.9200 - 2.5500 0.98 2794 131 0.3303 0.4257 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID -2:10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.849 -29.011 -3.384 REMARK 3 T TENSOR REMARK 3 T11: 0.8658 T22: 0.9066 REMARK 3 T33: 0.7441 T12: -0.0532 REMARK 3 T13: -0.0701 T23: 0.1453 REMARK 3 L TENSOR REMARK 3 L11: 7.7389 L22: 4.3139 REMARK 3 L33: 4.1150 L12: 2.9743 REMARK 3 L13: -1.7055 L23: 2.7835 REMARK 3 S TENSOR REMARK 3 S11: -0.2380 S12: -0.1533 S13: 0.6514 REMARK 3 S21: 1.6379 S22: 0.7071 S23: 0.8953 REMARK 3 S31: 0.1905 S32: 0.8499 S33: -0.6723 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 11:31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.097 -39.877 -4.335 REMARK 3 T TENSOR REMARK 3 T11: 0.5961 T22: 0.8227 REMARK 3 T33: 0.6440 T12: 0.0547 REMARK 3 T13: -0.0225 T23: 0.2387 REMARK 3 L TENSOR REMARK 3 L11: 9.7752 L22: 7.5526 REMARK 3 L33: 2.7933 L12: 1.6445 REMARK 3 L13: 2.6737 L23: 4.2038 REMARK 3 S TENSOR REMARK 3 S11: -0.1410 S12: -0.2127 S13: -0.6421 REMARK 3 S21: 0.7712 S22: 0.1006 S23: -0.4688 REMARK 3 S31: 1.0586 S32: 1.1380 S33: 0.1781 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 32:53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.335 -41.444 -16.459 REMARK 3 T TENSOR REMARK 3 T11: 0.5670 T22: 0.7234 REMARK 3 T33: 0.6986 T12: -0.0880 REMARK 3 T13: 0.1650 T23: 0.2601 REMARK 3 L TENSOR REMARK 3 L11: 2.4469 L22: 4.6216 REMARK 3 L33: 7.8069 L12: -0.3599 REMARK 3 L13: 3.7233 L23: 2.5342 REMARK 3 S TENSOR REMARK 3 S11: -0.0285 S12: 0.0665 S13: 0.3158 REMARK 3 S21: 0.3203 S22: -0.2610 S23: 0.1296 REMARK 3 S31: 0.7191 S32: -0.1236 S33: 0.1500 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 73:79 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.053 -56.763 -18.855 REMARK 3 T TENSOR REMARK 3 T11: 0.7901 T22: 0.8042 REMARK 3 T33: 0.7656 T12: 0.0773 REMARK 3 T13: 0.2751 T23: 0.1389 REMARK 3 L TENSOR REMARK 3 L11: 8.2890 L22: 6.7536 REMARK 3 L33: 2.3386 L12: 0.5394 REMARK 3 L13: 3.5515 L23: 2.2703 REMARK 3 S TENSOR REMARK 3 S11: -0.5550 S12: 0.2643 S13: -0.3231 REMARK 3 S21: -0.3966 S22: 0.4860 S23: -1.0121 REMARK 3 S31: 0.4707 S32: 1.6707 S33: 0.0949 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 80:107 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.347 -45.270 -24.884 REMARK 3 T TENSOR REMARK 3 T11: 0.6461 T22: 0.6388 REMARK 3 T33: 0.7349 T12: -0.0442 REMARK 3 T13: 0.2342 T23: 0.1501 REMARK 3 L TENSOR REMARK 3 L11: 0.9687 L22: 2.0631 REMARK 3 L33: 2.6309 L12: 0.0288 REMARK 3 L13: 0.1819 L23: 0.8554 REMARK 3 S TENSOR REMARK 3 S11: 0.0163 S12: 0.5075 S13: -0.0070 REMARK 3 S21: -0.8672 S22: -0.3292 S23: -0.2766 REMARK 3 S31: 0.0390 S32: 0.0868 S33: 0.1820 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 108:119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.933 -35.659 -27.139 REMARK 3 T TENSOR REMARK 3 T11: 0.7700 T22: 1.6646 REMARK 3 T33: 0.8065 T12: -0.2745 REMARK 3 T13: 0.2378 T23: 0.1051 REMARK 3 L TENSOR REMARK 3 L11: 9.5171 L22: 8.9066 REMARK 3 L33: 6.0537 L12: -6.5274 REMARK 3 L13: 0.4221 L23: 3.1298 REMARK 3 S TENSOR REMARK 3 S11: 0.4658 S12: -0.6965 S13: 0.7743 REMARK 3 S21: -0.4530 S22: -0.1308 S23: -1.0762 REMARK 3 S31: 0.5833 S32: -0.1758 S33: -0.3046 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 120:176 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.399 -30.624 -22.147 REMARK 3 T TENSOR REMARK 3 T11: 0.4437 T22: 0.6421 REMARK 3 T33: 0.5630 T12: -0.1207 REMARK 3 T13: 0.0189 T23: 0.3268 REMARK 3 L TENSOR REMARK 3 L11: 3.5990 L22: 8.1633 REMARK 3 L33: 7.2841 L12: -0.6244 REMARK 3 L13: -1.6176 L23: 3.1875 REMARK 3 S TENSOR REMARK 3 S11: -0.1064 S12: 0.3397 S13: 0.1924 REMARK 3 S21: -0.3157 S22: -0.0747 S23: -0.1355 REMARK 3 S31: -0.3009 S32: 0.4014 S33: 0.1157 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WJ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000248408. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9099 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 74.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.84800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5VPT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1 M AMMONIUM REMARK 280 SULFATE, 10 MM MNCL2, 10 MM MGCL2, 0.5% PVP K15, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 45.04500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 45.04500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.07050 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 45.04500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 45.04500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 66.07050 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 45.04500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 45.04500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 66.07050 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 45.04500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 45.04500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 66.07050 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 45.04500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 45.04500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 66.07050 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 45.04500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 45.04500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.07050 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 45.04500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 45.04500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.07050 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 45.04500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 45.04500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.07050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -337.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -90.09000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -90.09000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -90.09000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -90.09000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 -90.09000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 -90.09000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 -90.09000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 -90.09000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 ARG A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 LYS A 19 CE NZ REMARK 470 GLU A 31 CD OE1 OE2 REMARK 470 LYS A 34 CE NZ REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LYS A 113 CE NZ REMARK 470 ARG A 125 CZ NH1 NH2 REMARK 470 LEU A 132 CG CD1 CD2 REMARK 470 LYS A 134 CD CE NZ REMARK 470 ASN A 136 CG OD1 ND2 REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 ILE A 138 CG1 CG2 CD1 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 GLU A 153 CD OE1 OE2 REMARK 470 MET A 155 CE REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 ASP A 189 CG OD1 OD2 REMARK 470 GLN A 193 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 30 -62.04 -108.76 REMARK 500 SER A 53 -121.89 -74.01 REMARK 500 ARG A 125 -167.56 -106.41 REMARK 500 LYS A 139 -47.01 61.35 REMARK 500 THR A 162 -60.85 61.90 REMARK 500 SER A 194 -6.79 -154.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 QQ4 A 204 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 91.3 REMARK 620 3 GLU A 119 OE2 159.4 109.1 REMARK 620 4 ILE A 120 O 73.2 99.0 105.7 REMARK 620 5 U3A A 203 O13 102.5 88.8 75.4 171.1 REMARK 620 6 U3A A 203 O15 81.0 165.6 78.4 90.5 81.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE2 REMARK 620 2 ASP A 108 OD1 91.7 REMARK 620 3 U3A A 203 O13 144.1 76.6 REMARK 620 4 U3A A 203 O10 121.8 146.3 77.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue U3A A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QQ4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 206 DBREF1 6WJ4 A 1 50 UNP A0A481PFF5_9INFA DBREF2 6WJ4 A A0A481PFF5 1 50 DBREF 6WJ4 A 73 196 UNP C6H0Y9 C6H0Y9_9INFA 73 196 SEQADV 6WJ4 MET A -19 UNP A0A481PFF EXPRESSION TAG SEQADV 6WJ4 GLY A -18 UNP A0A481PFF EXPRESSION TAG SEQADV 6WJ4 SER A -17 UNP A0A481PFF EXPRESSION TAG SEQADV 6WJ4 SER A -16 UNP A0A481PFF EXPRESSION TAG SEQADV 6WJ4 HIS A -15 UNP A0A481PFF EXPRESSION TAG SEQADV 6WJ4 HIS A -14 UNP A0A481PFF EXPRESSION TAG SEQADV 6WJ4 HIS A -13 UNP A0A481PFF EXPRESSION TAG SEQADV 6WJ4 HIS A -12 UNP A0A481PFF EXPRESSION TAG SEQADV 6WJ4 HIS A -11 UNP A0A481PFF EXPRESSION TAG SEQADV 6WJ4 HIS A -10 UNP A0A481PFF EXPRESSION TAG SEQADV 6WJ4 SER A -9 UNP A0A481PFF EXPRESSION TAG SEQADV 6WJ4 SER A -8 UNP A0A481PFF EXPRESSION TAG SEQADV 6WJ4 GLY A -7 UNP A0A481PFF EXPRESSION TAG SEQADV 6WJ4 LEU A -6 UNP A0A481PFF EXPRESSION TAG SEQADV 6WJ4 VAL A -5 UNP A0A481PFF EXPRESSION TAG SEQADV 6WJ4 PRO A -4 UNP A0A481PFF EXPRESSION TAG SEQADV 6WJ4 ARG A -3 UNP A0A481PFF EXPRESSION TAG SEQADV 6WJ4 GLY A -2 UNP A0A481PFF EXPRESSION TAG SEQADV 6WJ4 SER A -1 UNP A0A481PFF EXPRESSION TAG SEQADV 6WJ4 HIS A 0 UNP A0A481PFF EXPRESSION TAG SEQADV 6WJ4 GLY A 51 UNP A0A481PFF LINKER SEQADV 6WJ4 GLY A 52 UNP A0A481PFF LINKER SEQADV 6WJ4 SER A 53 UNP A0A481PFF LINKER SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA ILE CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE GLU ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG HET MN A 201 1 HET MN A 202 1 HET U3A A 203 31 HET QQ4 A 204 34 HET SO4 A 205 5 HET SO4 A 206 5 HETNAM MN MANGANESE (II) ION HETNAM U3A 5-HYDROXY-N-[2-(2-METHOXYPYRIDIN-4-YL)ETHYL]-6-OXO-2- HETNAM 2 U3A [2-(TRIFLUOROMETHYL)PHENYL]-3,6-DIHYDROPYRIMIDINE-4- HETNAM 3 U3A CARBOXAMIDE HETNAM QQ4 HEXA VINYLPYRROLIDONE K15 HETNAM SO4 SULFATE ION HETSYN QQ4 1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-DODECANE- HETSYN 2 QQ4 1,3,5,7,9,11-HEXAYL]HEXA(PYRROLIDIN-2-ONE) FORMUL 2 MN 2(MN 2+) FORMUL 4 U3A C20 H17 F3 N4 O4 FORMUL 5 QQ4 C36 H56 N6 O6 FORMUL 6 SO4 2(O4 S 2-) FORMUL 8 HOH *29(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 GLU A 23 1 14 HELIX 3 AA3 GLU A 31 GLY A 51 1 21 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 LYS A 139 1 14 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 GLN A 193 1 7 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O HIS A 144 N PHE A 117 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 201 1555 1555 2.42 LINK OE2 GLU A 80 MN MN A 202 1555 1555 2.14 LINK OD2 ASP A 108 MN MN A 201 1555 1555 2.00 LINK OD1 ASP A 108 MN MN A 202 1555 1555 1.99 LINK OE2 GLU A 119 MN MN A 201 1555 1555 2.46 LINK O ILE A 120 MN MN A 201 1555 1555 2.03 LINK MN MN A 201 O13 U3A A 203 1555 1555 2.48 LINK MN MN A 201 O15 U3A A 203 1555 1555 1.86 LINK MN MN A 202 O13 U3A A 203 1555 1555 2.12 LINK MN MN A 202 O10 U3A A 203 1555 1555 2.61 SITE 1 AC1 5 HIS A 41 ASP A 108 GLU A 119 ILE A 120 SITE 2 AC1 5 U3A A 203 SITE 1 AC2 3 GLU A 80 ASP A 108 U3A A 203 SITE 1 AC3 11 TYR A 24 ALA A 37 ILE A 38 HIS A 41 SITE 2 AC3 11 LEU A 106 ASP A 108 GLU A 119 ILE A 120 SITE 3 AC3 11 MN A 201 MN A 202 HOH A 306 SITE 1 AC4 2 MET A 12 ILE A 78 SITE 1 AC5 4 GLY A 52 SER A 53 ARG A 75 LYS A 113 SITE 1 AC6 6 ILE A 30 GLU A 31 THR A 32 ASN A 33 SITE 2 AC6 6 LYS A 34 SER A 194 CRYST1 90.090 90.090 132.141 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011100 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011100 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007568 0.00000