HEADER TRANSFERASE 13-APR-20 6WJ7 TITLE THE STRUCTURE OF NTMT1 IN COMPLEX WITH COMPOUND C2A COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-TERMINAL XAA-PRO-LYS N-METHYLTRANSFERASE 1; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: ALPHA N-TERMINAL PROTEIN METHYLTRANSFERASE 1A, COMPND 5 METHYLTRANSFERASE-LIKE PROTEIN 11A,N-TERMINAL RCC1 METHYLTRANSFERASE, COMPND 6 X-PRO-LYS N-TERMINAL PROTEIN METHYLTRANSFERASE 1A,NTM1A; COMPND 7 EC: 2.1.1.244; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: GLY-PRO-LYS-ARG-ILE-ALA-NH2; COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NTMT1, C9ORF32, METTL11A, NRMT, NRMT1, AD-003; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS METHYLTRANSFERASE, ENZYME, INHIBITOR COMPLEX, TRANSFERASE, KEYWDS 2 TRANSFERASE-TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.SRINIVASAN,D.CHEN,R.HUANG,N.NOINAJ REVDAT 6 24-APR-24 6WJ7 1 COMPND SOURCE REMARK DBREF REVDAT 6 2 1 SEQRES HET HETNAM FORMUL REVDAT 6 3 1 LINK ATOM REVDAT 5 15-NOV-23 6WJ7 1 REMARK REVDAT 4 25-OCT-23 6WJ7 1 REMARK REVDAT 3 22-FEB-23 6WJ7 1 COMPND REMARK SEQRES HET REVDAT 3 2 1 HETNAM HETSYN FORMUL LINK REVDAT 3 3 1 ATOM REVDAT 2 26-AUG-20 6WJ7 1 JRNL REVDAT 1 19-AUG-20 6WJ7 0 JRNL AUTH D.CHEN,C.DONG,G.DONG,K.SRINIVASAN,J.MIN,N.NOINAJ,R.HUANG JRNL TITL PROBING THE PLASTICITY IN THE ACTIVE SITE OF PROTEIN JRNL TITL 2 N-TERMINAL METHYLTRANSFERASE 1 USING BISUBSTRATE ANALOGUES. JRNL REF J.MED.CHEM. V. 63 8419 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32605369 JRNL DOI 10.1021/ACS.JMEDCHEM.0C00770 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 46403 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.5900 - 3.4300 1.00 3344 152 0.1398 0.1625 REMARK 3 2 3.4300 - 2.7200 1.00 3227 145 0.1663 0.1930 REMARK 3 3 2.7200 - 2.3800 1.00 3216 145 0.1709 0.2182 REMARK 3 4 2.3800 - 2.1600 1.00 3167 145 0.1680 0.1746 REMARK 3 5 2.1600 - 2.0100 1.00 3163 139 0.1520 0.1705 REMARK 3 6 2.0100 - 1.8900 1.00 3182 143 0.1650 0.1702 REMARK 3 7 1.8900 - 1.7900 1.00 3161 146 0.1579 0.1719 REMARK 3 8 1.7900 - 1.7200 1.00 3141 138 0.1705 0.1779 REMARK 3 9 1.7200 - 1.6500 1.00 3166 139 0.1745 0.1941 REMARK 3 10 1.6500 - 1.5900 1.00 3121 138 0.1833 0.2265 REMARK 3 11 1.5900 - 1.5400 1.00 3131 143 0.1899 0.2461 REMARK 3 12 1.5400 - 1.5000 1.00 3176 141 0.2280 0.2611 REMARK 3 13 1.5000 - 1.4600 1.00 3093 141 0.2284 0.2532 REMARK 3 14 1.4600 - 1.4200 1.00 3119 141 0.2608 0.2723 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4601 -12.5213 7.5017 REMARK 3 T TENSOR REMARK 3 T11: 0.1276 T22: 0.2719 REMARK 3 T33: 0.2688 T12: 0.0112 REMARK 3 T13: 0.0202 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.2490 L22: 0.3159 REMARK 3 L33: 0.7867 L12: -0.0692 REMARK 3 L13: 0.0362 L23: -0.4632 REMARK 3 S TENSOR REMARK 3 S11: 0.0049 S12: 0.0379 S13: 0.0006 REMARK 3 S21: -0.0530 S22: 0.0112 S23: 0.5760 REMARK 3 S31: 0.0037 S32: -0.5632 S33: 0.2322 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.7149 -19.6259 -3.2834 REMARK 3 T TENSOR REMARK 3 T11: 0.1818 T22: 0.1438 REMARK 3 T33: 0.1418 T12: -0.0150 REMARK 3 T13: -0.0180 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.0699 L22: 0.0649 REMARK 3 L33: -0.0055 L12: 0.0648 REMARK 3 L13: -0.0135 L23: -0.0379 REMARK 3 S TENSOR REMARK 3 S11: 0.0664 S12: 0.0252 S13: 0.0070 REMARK 3 S21: -0.1135 S22: -0.0203 S23: 0.1458 REMARK 3 S31: 0.1318 S32: 0.0168 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 35 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.1666 -7.9671 -2.4774 REMARK 3 T TENSOR REMARK 3 T11: 0.1432 T22: 0.1823 REMARK 3 T33: 0.1471 T12: -0.0193 REMARK 3 T13: 0.0073 T23: 0.0336 REMARK 3 L TENSOR REMARK 3 L11: 0.4886 L22: 0.6969 REMARK 3 L33: 0.1370 L12: -0.1122 REMARK 3 L13: 0.4503 L23: -0.1571 REMARK 3 S TENSOR REMARK 3 S11: -0.0808 S12: 0.3793 S13: 0.0153 REMARK 3 S21: -0.2329 S22: -0.0040 S23: -0.2338 REMARK 3 S31: -0.0570 S32: 0.3621 S33: -0.0330 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.4108 -7.4449 9.7232 REMARK 3 T TENSOR REMARK 3 T11: 0.1227 T22: 0.1329 REMARK 3 T33: 0.1777 T12: -0.0147 REMARK 3 T13: -0.0345 T23: 0.0308 REMARK 3 L TENSOR REMARK 3 L11: 0.2399 L22: 0.4931 REMARK 3 L33: 0.3107 L12: -0.0448 REMARK 3 L13: 0.1569 L23: 0.1637 REMARK 3 S TENSOR REMARK 3 S11: -0.0338 S12: -0.0299 S13: 0.1009 REMARK 3 S21: 0.0453 S22: -0.0920 S23: -0.1279 REMARK 3 S31: -0.0089 S32: 0.0666 S33: -0.0440 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 74 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.2816 -19.7161 8.1004 REMARK 3 T TENSOR REMARK 3 T11: 0.1208 T22: 0.1186 REMARK 3 T33: 0.1370 T12: 0.0056 REMARK 3 T13: -0.0018 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.4070 L22: 0.9065 REMARK 3 L33: 0.7342 L12: 0.0212 REMARK 3 L13: 0.5370 L23: -0.3713 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: 0.0065 S13: -0.0365 REMARK 3 S21: -0.0109 S22: -0.0483 S23: -0.1046 REMARK 3 S31: 0.0666 S32: 0.0198 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 111 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9759 -11.9842 17.8061 REMARK 3 T TENSOR REMARK 3 T11: 0.1673 T22: 0.1555 REMARK 3 T33: 0.1270 T12: -0.0009 REMARK 3 T13: -0.0145 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.2330 L22: 0.4192 REMARK 3 L33: 0.5096 L12: -0.1722 REMARK 3 L13: -0.0556 L23: -0.4475 REMARK 3 S TENSOR REMARK 3 S11: 0.0334 S12: -0.2406 S13: -0.0414 REMARK 3 S21: 0.2526 S22: -0.0724 S23: -0.0281 REMARK 3 S31: -0.0457 S32: -0.0796 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 131 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5265 -3.3398 7.6185 REMARK 3 T TENSOR REMARK 3 T11: 0.1549 T22: 0.1119 REMARK 3 T33: 0.1345 T12: 0.0202 REMARK 3 T13: -0.0117 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 0.3125 L22: 1.1661 REMARK 3 L33: 0.9770 L12: 0.2616 REMARK 3 L13: -0.0008 L23: -0.7828 REMARK 3 S TENSOR REMARK 3 S11: -0.0402 S12: -0.0185 S13: 0.1633 REMARK 3 S21: 0.0460 S22: 0.0311 S23: 0.1051 REMARK 3 S31: -0.2421 S32: -0.0893 S33: -0.0006 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 182 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5804 4.4616 3.7092 REMARK 3 T TENSOR REMARK 3 T11: 0.2441 T22: 0.1173 REMARK 3 T33: 0.2128 T12: 0.0279 REMARK 3 T13: -0.0398 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.3871 L22: 0.0769 REMARK 3 L33: 0.4458 L12: 0.0376 REMARK 3 L13: 0.4630 L23: -0.2092 REMARK 3 S TENSOR REMARK 3 S11: -0.1380 S12: 0.0887 S13: 0.2797 REMARK 3 S21: -0.0669 S22: 0.0283 S23: 0.1890 REMARK 3 S31: -0.3186 S32: -0.0758 S33: -0.0046 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 207 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0393 -2.3136 -5.4214 REMARK 3 T TENSOR REMARK 3 T11: 0.1766 T22: 0.1204 REMARK 3 T33: 0.1292 T12: -0.0136 REMARK 3 T13: -0.0170 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.1304 L22: 0.6389 REMARK 3 L33: 0.2415 L12: 0.1183 REMARK 3 L13: -0.0476 L23: -0.2296 REMARK 3 S TENSOR REMARK 3 S11: -0.0234 S12: 0.0261 S13: 0.0268 REMARK 3 S21: -0.0893 S22: 0.0453 S23: -0.1531 REMARK 3 S31: -0.1544 S32: 0.0199 S33: 0.0025 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WJ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000248426. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46403 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12000 REMARK 200 FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.30000 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6DTN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M LITHIUM CHLORIDE 0.1 M TRIS: REMARK 280 HCL, PH 8.5 32 % (W/V) PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.71033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.42067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.42067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.71033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 510 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -17 REMARK 465 GLY B -16 REMARK 465 SER B -15 REMARK 465 SER B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 SER B -7 REMARK 465 SER B -6 REMARK 465 GLY B -5 REMARK 465 LEU B -4 REMARK 465 VAL B -3 REMARK 465 PRO B -2 REMARK 465 ARG B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 GLU B 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 7 CB CG CD OE1 OE2 REMARK 470 LYS B 10 CG CD CE NZ REMARK 470 GLU B 55 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 3 N PRO A 3 CA -0.139 REMARK 500 PRO A 3 CD PRO A 3 N 0.130 REMARK 500 PRO A 3 C LYS A 4 N 0.138 REMARK 500 LYS A 4 C ARG A 5 N 0.156 REMARK 500 ARG A 5 C ILE A 6 N 0.141 REMARK 500 ILE A 6 C ALA A 7 N 0.179 REMARK 500 ALA A 7 C NH2 A 8 N 0.159 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 58 59.70 -109.91 REMARK 500 SER B 181 61.90 61.34 REMARK 500 REMARK 500 REMARK: NULL DBREF 6WJ7 B 2 223 UNP Q9BV86 NTM1A_HUMAN 2 223 DBREF 6WJ7 A 2 8 PDB 6WJ7 6WJ7 2 8 SEQADV 6WJ7 MET B -17 UNP Q9BV86 EXPRESSION TAG SEQADV 6WJ7 GLY B -16 UNP Q9BV86 EXPRESSION TAG SEQADV 6WJ7 SER B -15 UNP Q9BV86 EXPRESSION TAG SEQADV 6WJ7 SER B -14 UNP Q9BV86 EXPRESSION TAG SEQADV 6WJ7 HIS B -13 UNP Q9BV86 EXPRESSION TAG SEQADV 6WJ7 HIS B -12 UNP Q9BV86 EXPRESSION TAG SEQADV 6WJ7 HIS B -11 UNP Q9BV86 EXPRESSION TAG SEQADV 6WJ7 HIS B -10 UNP Q9BV86 EXPRESSION TAG SEQADV 6WJ7 HIS B -9 UNP Q9BV86 EXPRESSION TAG SEQADV 6WJ7 HIS B -8 UNP Q9BV86 EXPRESSION TAG SEQADV 6WJ7 SER B -7 UNP Q9BV86 EXPRESSION TAG SEQADV 6WJ7 SER B -6 UNP Q9BV86 EXPRESSION TAG SEQADV 6WJ7 GLY B -5 UNP Q9BV86 EXPRESSION TAG SEQADV 6WJ7 LEU B -4 UNP Q9BV86 EXPRESSION TAG SEQADV 6WJ7 VAL B -3 UNP Q9BV86 EXPRESSION TAG SEQADV 6WJ7 PRO B -2 UNP Q9BV86 EXPRESSION TAG SEQADV 6WJ7 ARG B -1 UNP Q9BV86 EXPRESSION TAG SEQADV 6WJ7 GLY B 0 UNP Q9BV86 EXPRESSION TAG SEQADV 6WJ7 SER B 1 UNP Q9BV86 EXPRESSION TAG SEQRES 1 B 241 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 241 LEU VAL PRO ARG GLY SER THR SER GLU VAL ILE GLU ASP SEQRES 3 B 241 GLU LYS GLN PHE TYR SER LYS ALA LYS THR TYR TRP LYS SEQRES 4 B 241 GLN ILE PRO PRO THR VAL ASP GLY MET LEU GLY GLY TYR SEQRES 5 B 241 GLY HIS ILE SER SER ILE ASP ILE ASN SER SER ARG LYS SEQRES 6 B 241 PHE LEU GLN ARG PHE LEU ARG GLU GLY PRO ASN LYS THR SEQRES 7 B 241 GLY THR SER CYS ALA LEU ASP CYS GLY ALA GLY ILE GLY SEQRES 8 B 241 ARG ILE THR LYS ARG LEU LEU LEU PRO LEU PHE ARG GLU SEQRES 9 B 241 VAL ASP MET VAL ASP ILE THR GLU ASP PHE LEU VAL GLN SEQRES 10 B 241 ALA LYS THR TYR LEU GLY GLU GLU GLY LYS ARG VAL ARG SEQRES 11 B 241 ASN TYR PHE CYS CYS GLY LEU GLN ASP PHE THR PRO GLU SEQRES 12 B 241 PRO ASP SER TYR ASP VAL ILE TRP ILE GLN TRP VAL ILE SEQRES 13 B 241 GLY HIS LEU THR ASP GLN HIS LEU ALA GLU PHE LEU ARG SEQRES 14 B 241 ARG CYS LYS GLY SER LEU ARG PRO ASN GLY ILE ILE VAL SEQRES 15 B 241 ILE LYS ASP ASN MET ALA GLN GLU GLY VAL ILE LEU ASP SEQRES 16 B 241 ASP VAL ASP SER SER VAL CYS ARG ASP LEU ASP VAL VAL SEQRES 17 B 241 ARG ARG ILE ILE CYS SER ALA GLY LEU SER LEU LEU ALA SEQRES 18 B 241 GLU GLU ARG GLN GLU ASN LEU PRO ASP GLU ILE TYR HIS SEQRES 19 B 241 VAL TYR SER PHE ALA LEU ARG SEQRES 1 A 7 GLY PRO LYS ARG ILE ALA NH2 HET NH2 A 8 1 HET AN6 A 101 28 HETNAM NH2 AMINO GROUP HETNAM AN6 5'-{[(3S)-3-AMINO-3-CARBOXYPROPYL](ETHYL)AMINO}-5'- HETNAM 2 AN6 DEOXYADENOSINE FORMUL 2 NH2 H2 N FORMUL 3 AN6 C16 H25 N7 O5 FORMUL 4 HOH *233(H2 O) HELIX 1 AA1 ASP B 8 GLN B 22 1 15 HELIX 2 AA2 THR B 26 LEU B 31 1 6 HELIX 3 AA3 TYR B 34 HIS B 36 5 3 HELIX 4 AA4 ILE B 37 ARG B 54 1 18 HELIX 5 AA5 GLY B 73 LEU B 79 1 7 HELIX 6 AA6 THR B 93 LEU B 104 1 12 HELIX 7 AA7 GLY B 105 LYS B 109 5 5 HELIX 8 AA8 GLY B 118 PHE B 122 5 5 HELIX 9 AA9 VAL B 137 LEU B 141 5 5 HELIX 10 AB1 THR B 142 SER B 156 1 15 HELIX 11 AB2 ASP B 186 ALA B 197 1 12 SHEET 1 AA1 7 VAL B 111 CYS B 116 0 SHEET 2 AA1 7 GLU B 86 ASP B 91 1 N MET B 89 O ASN B 113 SHEET 3 AA1 7 CYS B 64 CYS B 68 1 N ASP B 67 O ASP B 88 SHEET 4 AA1 7 TYR B 129 GLN B 135 1 O TRP B 133 N LEU B 66 SHEET 5 AA1 7 LEU B 157 ASN B 168 1 O VAL B 164 N ILE B 134 SHEET 6 AA1 7 VAL B 217 ARG B 223 -1 O LEU B 222 N ILE B 163 SHEET 7 AA1 7 SER B 200 ARG B 206 -1 N SER B 200 O ARG B 223 SHEET 1 AA2 2 VAL B 174 ASP B 177 0 SHEET 2 AA2 2 SER B 182 ARG B 185 -1 O SER B 182 N ASP B 177 LINK N GLY A 2 C1 AN6 A 101 1555 1555 1.51 LINK C ALA A 7 N NH2 A 8 1555 1555 1.50 CRYST1 72.804 72.804 80.131 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013736 0.007930 0.000000 0.00000 SCALE2 0.000000 0.015860 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012480 0.00000