HEADER ISOMERASE 13-APR-20 6WJA TITLE UDP-GLCNAC C4-EPIMERASE MUTANT S121A/Y146F FROM PSEUDOMONAS PROTEGENS TITLE 2 IN COMPLEX WITH UDP-GALNAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT EPIMERASE/DEHYDRATASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PELX; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PROTEGENS; SOURCE 3 ORGANISM_TAXID: 220664; SOURCE 4 STRAIN: PF-5; SOURCE 5 GENE: PFL_2971; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SHORT CHAIN DEHYDROGENASE, ISOMERASE, COMPLEX, NAD DEPENDENT EXPDTA X-RAY DIFFRACTION AUTHOR L.S.MARMONT,R.PFOH,P.L.HOWELL REVDAT 4 18-OCT-23 6WJA 1 REMARK REVDAT 3 02-SEP-20 6WJA 1 JRNL REVDAT 2 15-JUL-20 6WJA 1 JRNL REVDAT 1 08-JUL-20 6WJA 0 JRNL AUTH L.S.MARMONT,G.B.WHITFIELD,R.PFOH,R.J.WILLIAMS,T.E.RANDALL, JRNL AUTH 2 A.OSTASZEWSKI,E.RAZVI,R.A.GROVES,H.ROBINSON,M.NITZ, JRNL AUTH 3 M.R.PARSEK,I.A.LEWIS,J.C.WHITNEY,J.J.HARRISON,P.L.HOWELL JRNL TITL PELX IS A UDP-N-ACETYLGLUCOSAMINE C4-EPIMERASE INVOLVED IN JRNL TITL 2 PEL POLYSACCHARIDE-DEPENDENT BIOFILM FORMATION. JRNL REF J.BIOL.CHEM. V. 295 11949 2020 JRNL REFN ESSN 1083-351X JRNL PMID 32601062 JRNL DOI 10.1074/JBC.RA120.014555 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 82883 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.580 REMARK 3 FREE R VALUE TEST SET COUNT : 3796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.9100 - 6.2700 1.00 2964 150 0.1477 0.1581 REMARK 3 2 6.2700 - 4.9800 1.00 2952 148 0.1536 0.2093 REMARK 3 3 4.9800 - 4.3500 1.00 2986 144 0.1234 0.1493 REMARK 3 4 4.3500 - 3.9600 1.00 2989 136 0.1348 0.1717 REMARK 3 5 3.9600 - 3.6700 1.00 2991 145 0.1338 0.1758 REMARK 3 6 3.6700 - 3.4600 1.00 2954 143 0.1458 0.1551 REMARK 3 7 3.4600 - 3.2800 1.00 2960 152 0.1559 0.1782 REMARK 3 8 3.2800 - 3.1400 1.00 2977 132 0.1664 0.2125 REMARK 3 9 3.1400 - 3.0200 1.00 2989 140 0.1641 0.2357 REMARK 3 10 3.0200 - 2.9200 1.00 2975 146 0.1625 0.2089 REMARK 3 11 2.9200 - 2.8200 1.00 2960 137 0.1726 0.2332 REMARK 3 12 2.8200 - 2.7400 1.00 2958 147 0.1619 0.2608 REMARK 3 13 2.7400 - 2.6700 0.99 2947 139 0.1607 0.1712 REMARK 3 14 2.6700 - 2.6100 0.99 2978 140 0.1580 0.2461 REMARK 3 15 2.6100 - 2.5500 0.99 2923 150 0.1639 0.2030 REMARK 3 16 2.5500 - 2.4900 0.99 2930 131 0.1545 0.1899 REMARK 3 17 2.4900 - 2.4400 0.98 2907 154 0.1536 0.2052 REMARK 3 18 2.4400 - 2.4000 0.98 2952 141 0.1544 0.1799 REMARK 3 19 2.4000 - 2.3500 0.99 2942 117 0.1577 0.1936 REMARK 3 20 2.3500 - 2.3100 0.98 2939 161 0.1714 0.2158 REMARK 3 21 2.3100 - 2.2800 0.98 2885 130 0.1719 0.2224 REMARK 3 22 2.2800 - 2.2400 0.98 2934 139 0.1811 0.2239 REMARK 3 23 2.2400 - 2.2100 0.98 2882 127 0.1886 0.2491 REMARK 3 24 2.2100 - 2.1800 0.98 2955 148 0.2027 0.2561 REMARK 3 25 2.1800 - 2.1500 0.98 2870 156 0.2247 0.2722 REMARK 3 26 2.1500 - 2.1200 0.97 2929 136 0.2437 0.2879 REMARK 3 27 2.1200 - 2.0940 0.85 2459 107 0.2607 0.3295 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.225 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.569 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4773 REMARK 3 ANGLE : 0.897 6517 REMARK 3 CHIRALITY : 0.049 758 REMARK 3 PLANARITY : 0.004 843 REMARK 3 DIHEDRAL : 15.146 2818 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1488 21.1343 84.3344 REMARK 3 T TENSOR REMARK 3 T11: 0.1607 T22: 0.2334 REMARK 3 T33: 0.3841 T12: 0.0897 REMARK 3 T13: -0.0522 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 1.3605 L22: 2.4116 REMARK 3 L33: 1.8216 L12: 0.9170 REMARK 3 L13: 0.7046 L23: 0.4590 REMARK 3 S TENSOR REMARK 3 S11: -0.0577 S12: -0.1778 S13: 0.2783 REMARK 3 S21: -0.1727 S22: -0.0901 S23: 0.6306 REMARK 3 S31: -0.3224 S32: -0.2367 S33: 0.0563 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 178 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5916 15.3717 65.1177 REMARK 3 T TENSOR REMARK 3 T11: 0.3827 T22: 0.2169 REMARK 3 T33: 0.3055 T12: -0.0458 REMARK 3 T13: -0.1387 T23: 0.0500 REMARK 3 L TENSOR REMARK 3 L11: 2.6962 L22: 2.0185 REMARK 3 L33: 2.2649 L12: 0.3519 REMARK 3 L13: -0.0955 L23: 0.4873 REMARK 3 S TENSOR REMARK 3 S11: -0.1977 S12: 0.3264 S13: 0.3048 REMARK 3 S21: -0.6243 S22: 0.0952 S23: 0.3101 REMARK 3 S31: -0.4436 S32: 0.1008 S33: 0.0366 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 285 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0900 9.1347 68.1227 REMARK 3 T TENSOR REMARK 3 T11: 0.2557 T22: 0.3179 REMARK 3 T33: 0.3570 T12: 0.0162 REMARK 3 T13: -0.0856 T23: -0.0430 REMARK 3 L TENSOR REMARK 3 L11: 2.3563 L22: 7.9529 REMARK 3 L33: 9.2508 L12: 2.9111 REMARK 3 L13: -2.8311 L23: -6.5545 REMARK 3 S TENSOR REMARK 3 S11: -0.1277 S12: 0.4835 S13: -0.0914 REMARK 3 S21: -0.6415 S22: 0.4489 S23: 0.7415 REMARK 3 S31: 0.4103 S32: -0.8872 S33: -0.3101 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6814 30.0949 105.0086 REMARK 3 T TENSOR REMARK 3 T11: 0.3363 T22: 0.2824 REMARK 3 T33: 0.2131 T12: -0.0625 REMARK 3 T13: -0.0729 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.3729 L22: 3.2415 REMARK 3 L33: 3.2672 L12: -0.8130 REMARK 3 L13: 0.8374 L23: 0.2698 REMARK 3 S TENSOR REMARK 3 S11: -0.1262 S12: -0.0485 S13: 0.1349 REMARK 3 S21: 0.5312 S22: 0.0721 S23: -0.4274 REMARK 3 S31: -0.3474 S32: 0.3984 S33: 0.0478 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 77 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9514 25.2876 98.5303 REMARK 3 T TENSOR REMARK 3 T11: 0.2432 T22: 0.1929 REMARK 3 T33: 0.1431 T12: 0.0239 REMARK 3 T13: 0.0025 T23: -0.0543 REMARK 3 L TENSOR REMARK 3 L11: 7.1044 L22: 3.9925 REMARK 3 L33: 1.5813 L12: 2.5404 REMARK 3 L13: -0.3930 L23: 0.0560 REMARK 3 S TENSOR REMARK 3 S11: -0.0541 S12: -0.2637 S13: 0.1223 REMARK 3 S21: 0.3230 S22: -0.1268 S23: 0.2911 REMARK 3 S31: 0.0479 S32: -0.1855 S33: 0.1108 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 112 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5529 10.0319 95.6307 REMARK 3 T TENSOR REMARK 3 T11: 0.1815 T22: 0.2307 REMARK 3 T33: 0.1125 T12: 0.0120 REMARK 3 T13: 0.0044 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 1.5618 L22: 5.2805 REMARK 3 L33: 1.5395 L12: 0.2315 REMARK 3 L13: 1.5203 L23: 0.1867 REMARK 3 S TENSOR REMARK 3 S11: 0.0622 S12: -0.0643 S13: -0.3468 REMARK 3 S21: -0.0210 S22: -0.0405 S23: -0.0994 REMARK 3 S31: 0.2407 S32: 0.1062 S33: -0.0271 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.4768 17.7910 92.7552 REMARK 3 T TENSOR REMARK 3 T11: 0.1545 T22: 0.2305 REMARK 3 T33: 0.1759 T12: -0.0109 REMARK 3 T13: -0.0097 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.4939 L22: 2.3296 REMARK 3 L33: 4.1097 L12: 0.0692 REMARK 3 L13: -0.2481 L23: -1.4698 REMARK 3 S TENSOR REMARK 3 S11: -0.0332 S12: 0.0358 S13: -0.0708 REMARK 3 S21: -0.0026 S22: -0.0873 S23: -0.1963 REMARK 3 S31: -0.0096 S32: 0.2970 S33: 0.1127 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 178 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3867 11.3466 114.8419 REMARK 3 T TENSOR REMARK 3 T11: 0.3188 T22: 0.2682 REMARK 3 T33: 0.2248 T12: 0.0756 REMARK 3 T13: -0.0717 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 1.1010 L22: 1.8729 REMARK 3 L33: 3.9947 L12: 1.2938 REMARK 3 L13: -1.1622 L23: -1.9434 REMARK 3 S TENSOR REMARK 3 S11: 0.1459 S12: -0.0528 S13: 0.0080 REMARK 3 S21: 0.3701 S22: -0.0552 S23: -0.0217 REMARK 3 S31: -0.3384 S32: 0.0291 S33: -0.1003 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 232 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2091 3.9716 111.7393 REMARK 3 T TENSOR REMARK 3 T11: 0.2789 T22: 0.2820 REMARK 3 T33: 0.2726 T12: 0.1186 REMARK 3 T13: -0.0535 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 0.8589 L22: 1.7584 REMARK 3 L33: 5.9997 L12: 0.8591 REMARK 3 L13: -1.3792 L23: -2.1670 REMARK 3 S TENSOR REMARK 3 S11: 0.0027 S12: 0.1041 S13: -0.0858 REMARK 3 S21: 0.0950 S22: 0.0212 S23: -0.0572 REMARK 3 S31: 0.1025 S32: -0.2562 S33: -0.0356 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 285 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.8573 7.2751 109.0308 REMARK 3 T TENSOR REMARK 3 T11: 0.2875 T22: 0.4082 REMARK 3 T33: 0.3998 T12: 0.0593 REMARK 3 T13: -0.0929 T23: 0.0389 REMARK 3 L TENSOR REMARK 3 L11: 2.0820 L22: 0.9873 REMARK 3 L33: 7.6901 L12: 0.0162 REMARK 3 L13: -1.9985 L23: -1.3626 REMARK 3 S TENSOR REMARK 3 S11: 0.1222 S12: -0.0388 S13: -0.2882 REMARK 3 S21: 0.0978 S22: -0.2180 S23: -0.3861 REMARK 3 S31: 0.5326 S32: 1.1196 S33: 0.0334 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WJA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000231011. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82883 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.094 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.78700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1SB8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG 4000, 0.1 M SODIUM CITRATE PH REMARK 280 5.6, 0.2 M AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 61.79100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.66000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 61.79100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.66000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 537 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 641 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 26 CE NZ REMARK 470 LYS A 40 CE NZ REMARK 470 ARG A 202 NE CZ NH1 NH2 REMARK 470 LYS A 263 CG CD CE NZ REMARK 470 GLN A 266 CG CD OE1 NE2 REMARK 470 GLU A 304 CG CD OE1 OE2 REMARK 470 ARG A 308 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 308 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 49 -13.91 84.58 REMARK 500 SER A 141 64.48 -153.06 REMARK 500 GLU A 167 79.04 -116.94 REMARK 500 PHE A 174 -139.70 -90.87 REMARK 500 ARG A 180 -1.43 79.15 REMARK 500 ALA A 234 78.64 -151.53 REMARK 500 PHE B 98 -49.65 -132.68 REMARK 500 SER B 141 64.30 -153.34 REMARK 500 PHE B 174 -121.42 -87.05 REMARK 500 ARG B 180 -5.22 83.71 REMARK 500 VAL B 242 78.79 -113.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 UD2 B 402 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UD2 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UD2 B 402 DBREF 6WJA A 1 310 UNP Q4KCF6 Q4KCF6_PSEF5 1 310 DBREF 6WJA B 1 310 UNP Q4KCF6 Q4KCF6_PSEF5 1 310 SEQADV 6WJA ALA A 121 UNP Q4KCF6 SER 121 ENGINEERED MUTATION SEQADV 6WJA PHE A 146 UNP Q4KCF6 TYR 146 ENGINEERED MUTATION SEQADV 6WJA SER A 232 UNP Q4KCF6 CYS 232 ENGINEERED MUTATION SEQADV 6WJA ALA B 121 UNP Q4KCF6 SER 121 ENGINEERED MUTATION SEQADV 6WJA PHE B 146 UNP Q4KCF6 TYR 146 ENGINEERED MUTATION SEQADV 6WJA SER B 232 UNP Q4KCF6 CYS 232 ENGINEERED MUTATION SEQRES 1 A 310 MET SER ALA GLU ARG ILE LEU VAL THR GLY GLY ALA GLY SEQRES 2 A 310 PHE ILE GLY SER HIS LEU VAL ASP ALA LEU LEU ALA LYS SEQRES 3 A 310 GLY TYR ALA VAL ARG VAL LEU ASP ASP LEU SER THR GLY SEQRES 4 A 310 LYS VAL GLY ASN LEU PRO MET GLY ASP ALA GLY LEU GLU SEQRES 5 A 310 LEU LEU VAL GLY ASP ALA ALA ASP ALA ALA LEU LEU ALA SEQRES 6 A 310 ASP ALA VAL GLN GLY CYS ASP ALA VAL VAL HIS LEU ALA SEQRES 7 A 310 ALA VAL ALA SER VAL GLN ALA SER VAL GLU ASP PRO VAL SEQRES 8 A 310 ALA THR HIS GLN SER ASN PHE ILE ALA THR LEU ARG LEU SEQRES 9 A 310 CYS GLU ALA MET THR ALA ALA GLY ILE ARG ARG VAL VAL SEQRES 10 A 310 PHE ALA SER ALA ALA ALA VAL TYR GLY ASN ASN GLY GLU SEQRES 11 A 310 GLY THR PRO ILE ALA GLU ASP THR PRO LYS SER PRO LEU SEQRES 12 A 310 THR PRO PHE ALA ALA ASP LYS LEU ALA SER GLU TYR TYR SEQRES 13 A 310 LEU ASP PHE TYR ARG ARG GLN HIS GLY LEU GLU PRO VAL SEQRES 14 A 310 ILE LEU ARG PHE PHE ASN ILE PHE GLY PRO ARG GLN ASP SEQRES 15 A 310 PRO SER SER PRO TYR SER GLY VAL ILE SER ILE PHE SER SEQRES 16 A 310 GLU ARG ALA LYS ALA GLY ARG PRO ILE THR LEU PHE GLY SEQRES 17 A 310 ASP GLY GLY GLN THR ARG ASP PHE VAL TYR VAL ALA ASP SEQRES 18 A 310 LEU VAL LYS ILE LEU VAL GLN GLY LEU GLU SER PRO ALA SEQRES 19 A 310 PRO ALA ALA ASP ALA THR ASN VAL GLY LEU GLY GLY VAL SEQRES 20 A 310 THR THR LEU ASN ASP LEU ILE GLY ALA LEU GLN GLN ILE SEQRES 21 A 310 SER GLY LYS PRO LEU GLN VAL SER HIS GLY ALA THR ARG SEQRES 22 A 310 SER GLY ASP ILE ARG HIS SER LYS ALA ASP ASN ARG ARG SEQRES 23 A 310 LEU ARG GLU ARG PHE ASP LEU GLY THR PRO SER SER LEU SEQRES 24 A 310 ALA GLU GLY LEU GLU ARG LEU TYR ARG SER LEU SEQRES 1 B 310 MET SER ALA GLU ARG ILE LEU VAL THR GLY GLY ALA GLY SEQRES 2 B 310 PHE ILE GLY SER HIS LEU VAL ASP ALA LEU LEU ALA LYS SEQRES 3 B 310 GLY TYR ALA VAL ARG VAL LEU ASP ASP LEU SER THR GLY SEQRES 4 B 310 LYS VAL GLY ASN LEU PRO MET GLY ASP ALA GLY LEU GLU SEQRES 5 B 310 LEU LEU VAL GLY ASP ALA ALA ASP ALA ALA LEU LEU ALA SEQRES 6 B 310 ASP ALA VAL GLN GLY CYS ASP ALA VAL VAL HIS LEU ALA SEQRES 7 B 310 ALA VAL ALA SER VAL GLN ALA SER VAL GLU ASP PRO VAL SEQRES 8 B 310 ALA THR HIS GLN SER ASN PHE ILE ALA THR LEU ARG LEU SEQRES 9 B 310 CYS GLU ALA MET THR ALA ALA GLY ILE ARG ARG VAL VAL SEQRES 10 B 310 PHE ALA SER ALA ALA ALA VAL TYR GLY ASN ASN GLY GLU SEQRES 11 B 310 GLY THR PRO ILE ALA GLU ASP THR PRO LYS SER PRO LEU SEQRES 12 B 310 THR PRO PHE ALA ALA ASP LYS LEU ALA SER GLU TYR TYR SEQRES 13 B 310 LEU ASP PHE TYR ARG ARG GLN HIS GLY LEU GLU PRO VAL SEQRES 14 B 310 ILE LEU ARG PHE PHE ASN ILE PHE GLY PRO ARG GLN ASP SEQRES 15 B 310 PRO SER SER PRO TYR SER GLY VAL ILE SER ILE PHE SER SEQRES 16 B 310 GLU ARG ALA LYS ALA GLY ARG PRO ILE THR LEU PHE GLY SEQRES 17 B 310 ASP GLY GLY GLN THR ARG ASP PHE VAL TYR VAL ALA ASP SEQRES 18 B 310 LEU VAL LYS ILE LEU VAL GLN GLY LEU GLU SER PRO ALA SEQRES 19 B 310 PRO ALA ALA ASP ALA THR ASN VAL GLY LEU GLY GLY VAL SEQRES 20 B 310 THR THR LEU ASN ASP LEU ILE GLY ALA LEU GLN GLN ILE SEQRES 21 B 310 SER GLY LYS PRO LEU GLN VAL SER HIS GLY ALA THR ARG SEQRES 22 B 310 SER GLY ASP ILE ARG HIS SER LYS ALA ASP ASN ARG ARG SEQRES 23 B 310 LEU ARG GLU ARG PHE ASP LEU GLY THR PRO SER SER LEU SEQRES 24 B 310 ALA GLU GLY LEU GLU ARG LEU TYR ARG SER LEU HET NAD A 401 44 HET UD2 A 402 39 HET NAD B 401 44 HET UD2 B 402 26 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM UD2 URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE HETSYN UD2 (2R,3R,4R,5R,6R)-3-(ACETYLAMINO)-4,5-DIHYDROXY-6- HETSYN 2 UD2 (HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-2-YL [(2R,3S,4R, HETSYN 3 UD2 5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4- HETSYN 4 UD2 DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN HETSYN 5 UD2 DIPHOSPHATE FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 UD2 2(C17 H27 N3 O17 P2) FORMUL 7 HOH *413(H2 O) HELIX 1 AA1 GLY A 13 LYS A 26 1 14 HELIX 2 AA2 LYS A 40 LEU A 44 5 5 HELIX 3 AA3 ASP A 60 GLN A 69 1 10 HELIX 4 AA4 SER A 82 ASP A 89 1 8 HELIX 5 AA5 ASP A 89 PHE A 98 1 10 HELIX 6 AA6 PHE A 98 GLY A 112 1 15 HELIX 7 AA7 ALA A 123 GLY A 126 5 4 HELIX 8 AA8 THR A 144 GLY A 165 1 22 HELIX 9 AA9 GLY A 189 GLY A 201 1 13 HELIX 10 AB1 VAL A 219 SER A 232 1 14 HELIX 11 AB2 LEU A 250 GLY A 262 1 13 HELIX 12 AB3 ASN A 284 PHE A 291 1 8 HELIX 13 AB4 SER A 298 SER A 309 1 12 HELIX 14 AB5 GLY B 13 LYS B 26 1 14 HELIX 15 AB6 LYS B 40 LEU B 44 5 5 HELIX 16 AB7 ASP B 60 VAL B 68 1 9 HELIX 17 AB8 SER B 82 ASP B 89 1 8 HELIX 18 AB9 ASP B 89 PHE B 98 1 10 HELIX 19 AC1 PHE B 98 GLY B 112 1 15 HELIX 20 AC2 ALA B 123 GLY B 126 5 4 HELIX 21 AC3 THR B 144 GLY B 165 1 22 HELIX 22 AC4 GLY B 189 GLY B 201 1 13 HELIX 23 AC5 VAL B 219 SER B 232 1 14 HELIX 24 AC6 LEU B 250 GLY B 262 1 13 HELIX 25 AC7 ASN B 284 PHE B 291 1 8 HELIX 26 AC8 SER B 298 LEU B 310 1 13 SHEET 1 AA1 7 LEU A 51 VAL A 55 0 SHEET 2 AA1 7 ALA A 29 ASP A 34 1 N VAL A 32 O LEU A 54 SHEET 3 AA1 7 ARG A 5 THR A 9 1 N VAL A 8 O ARG A 31 SHEET 4 AA1 7 ALA A 73 HIS A 76 1 O VAL A 75 N LEU A 7 SHEET 5 AA1 7 ARG A 115 ALA A 121 1 O VAL A 117 N HIS A 76 SHEET 6 AA1 7 GLU A 167 PHE A 173 1 O VAL A 169 N PHE A 118 SHEET 7 AA1 7 THR A 240 VAL A 242 1 O VAL A 242 N ARG A 172 SHEET 1 AA2 2 PRO A 133 ILE A 134 0 SHEET 2 AA2 2 LYS A 281 ALA A 282 1 O LYS A 281 N ILE A 134 SHEET 1 AA3 2 ASN A 175 PHE A 177 0 SHEET 2 AA3 2 PHE A 216 TYR A 218 1 O VAL A 217 N ASN A 175 SHEET 1 AA4 2 ILE A 204 PHE A 207 0 SHEET 2 AA4 2 VAL A 267 GLY A 270 1 O GLY A 270 N LEU A 206 SHEET 1 AA5 2 THR A 213 ARG A 214 0 SHEET 2 AA5 2 THR A 248 THR A 249 -1 O THR A 248 N ARG A 214 SHEET 1 AA6 7 LEU B 51 VAL B 55 0 SHEET 2 AA6 7 ALA B 29 ASP B 34 1 N VAL B 32 O LEU B 54 SHEET 3 AA6 7 ARG B 5 THR B 9 1 N ILE B 6 O ALA B 29 SHEET 4 AA6 7 ALA B 73 HIS B 76 1 O ALA B 73 N LEU B 7 SHEET 5 AA6 7 ARG B 115 ALA B 121 1 O VAL B 117 N HIS B 76 SHEET 6 AA6 7 GLU B 167 PHE B 173 1 O LEU B 171 N SER B 120 SHEET 7 AA6 7 THR B 240 VAL B 242 1 O VAL B 242 N ARG B 172 SHEET 1 AA7 2 ASN B 175 PHE B 177 0 SHEET 2 AA7 2 PHE B 216 TYR B 218 1 O VAL B 217 N ASN B 175 SHEET 1 AA8 2 ILE B 204 PHE B 207 0 SHEET 2 AA8 2 VAL B 267 GLY B 270 1 O SER B 268 N ILE B 204 SHEET 1 AA9 2 THR B 213 ARG B 214 0 SHEET 2 AA9 2 THR B 248 THR B 249 -1 O THR B 248 N ARG B 214 SITE 1 AC1 33 GLY A 10 ALA A 12 GLY A 13 PHE A 14 SITE 2 AC1 33 ILE A 15 ASP A 34 ASP A 35 LEU A 36 SITE 3 AC1 33 SER A 37 THR A 38 GLY A 39 GLY A 56 SITE 4 AC1 33 ASP A 57 ALA A 58 LEU A 77 ALA A 78 SITE 5 AC1 33 ALA A 79 SER A 96 SER A 120 PHE A 146 SITE 6 AC1 33 LYS A 150 PHE A 173 PHE A 174 ILE A 176 SITE 7 AC1 33 HOH A 510 HOH A 543 HOH A 551 HOH A 559 SITE 8 AC1 33 HOH A 562 HOH A 569 HOH A 586 HOH A 596 SITE 9 AC1 33 HOH A 600 SITE 1 AC2 29 VAL A 83 ALA A 123 ASN A 175 TYR A 187 SITE 2 AC2 29 GLY A 189 VAL A 190 PHE A 194 THR A 205 SITE 3 AC2 29 LEU A 206 PHE A 207 GLN A 212 ARG A 214 SITE 4 AC2 29 LEU A 250 ARG A 273 ASP A 276 HOH A 507 SITE 5 AC2 29 HOH A 509 HOH A 521 HOH A 522 HOH A 524 SITE 6 AC2 29 HOH A 526 HOH A 528 HOH A 539 HOH A 550 SITE 7 AC2 29 HOH A 551 HOH A 570 HOH A 591 HOH A 615 SITE 8 AC2 29 HOH A 624 SITE 1 AC3 34 GLY B 10 ALA B 12 GLY B 13 PHE B 14 SITE 2 AC3 34 ILE B 15 ASP B 34 ASP B 35 LEU B 36 SITE 3 AC3 34 SER B 37 THR B 38 GLY B 39 GLY B 56 SITE 4 AC3 34 ASP B 57 ALA B 58 LEU B 77 ALA B 78 SITE 5 AC3 34 ALA B 79 SER B 96 ALA B 119 SER B 120 SITE 6 AC3 34 PHE B 146 LYS B 150 PHE B 173 PHE B 174 SITE 7 AC3 34 ILE B 176 HOH B 511 HOH B 551 HOH B 583 SITE 8 AC3 34 HOH B 588 HOH B 590 HOH B 591 HOH B 596 SITE 9 AC3 34 HOH B 608 HOH B 625 SITE 1 AC4 18 ASN B 175 GLY B 189 VAL B 190 PHE B 194 SITE 2 AC4 18 THR B 205 LEU B 206 PHE B 207 GLN B 212 SITE 3 AC4 18 ARG B 214 LEU B 250 ASP B 276 HOH B 528 SITE 4 AC4 18 HOH B 552 HOH B 559 HOH B 563 HOH B 565 SITE 5 AC4 18 HOH B 620 HOH B 623 CRYST1 123.582 75.320 79.258 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008092 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013277 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012617 0.00000