data_6WJS # _entry.id 6WJS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6WJS pdb_00006wjs 10.2210/pdb6wjs/pdb WWPDB D_1000248459 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 6wjr _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6WJS _pdbx_database_status.recvd_initial_deposition_date 2020-04-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wilt, H.M.' 1 ? 'Wang, Y.-X.' 2 0000-0002-2175-0148 'Stagno, J.R.' 3 0000-0002-6464-7829 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country NE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J Struct Biol X' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2590-1524 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 4 _citation.language ? _citation.page_first 100035 _citation.page_last 100035 _citation.title 'FMN riboswitch aptamer symmetry facilitates conformational switching through mutually exclusive coaxial stacking configurations.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.yjsbx.2020.100035 _citation.pdbx_database_id_PubMed 33103111 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wilt, H.M.' 1 ? primary 'Yu, P.' 2 ? primary 'Tan, K.' 3 ? primary 'Wang, Y.X.' 4 ? primary 'Stagno, J.R.' 5 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6WJS _cell.details ? _cell.formula_units_Z ? _cell.length_a 73.579 _cell.length_a_esd ? _cell.length_b 35.950 _cell.length_b_esd ? _cell.length_c 203.088 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WJS _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (112-MER)' 36229.492 1 ? ? ? ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGUAUUUGCUUUGAUUUGGUGAAAUUCCAAA ACCGACAGUAGAGUCUGGAUGAGAGAAGAUUC ; _entity_poly.pdbx_seq_one_letter_code_can ;GGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGUAUUUGCUUUGAUUUGGUGAAAUUCCAAA ACCGACAGUAGAGUCUGGAUGAGAGAAGAUUC ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 U n 1 5 C n 1 6 U n 1 7 U n 1 8 C n 1 9 G n 1 10 G n 1 11 G n 1 12 G n 1 13 C n 1 14 A n 1 15 G n 1 16 G n 1 17 G n 1 18 U n 1 19 G n 1 20 A n 1 21 A n 1 22 A n 1 23 U n 1 24 U n 1 25 C n 1 26 C n 1 27 C n 1 28 G n 1 29 A n 1 30 C n 1 31 C n 1 32 G n 1 33 G n 1 34 U n 1 35 G n 1 36 G n 1 37 U n 1 38 A n 1 39 U n 1 40 A n 1 41 G n 1 42 U n 1 43 C n 1 44 C n 1 45 A n 1 46 C n 1 47 G n 1 48 A n 1 49 A n 1 50 A n 1 51 G n 1 52 U n 1 53 A n 1 54 U n 1 55 U n 1 56 U n 1 57 G n 1 58 C n 1 59 U n 1 60 U n 1 61 U n 1 62 G n 1 63 A n 1 64 U n 1 65 U n 1 66 U n 1 67 G n 1 68 G n 1 69 U n 1 70 G n 1 71 A n 1 72 A n 1 73 A n 1 74 U n 1 75 U n 1 76 C n 1 77 C n 1 78 A n 1 79 A n 1 80 A n 1 81 A n 1 82 C n 1 83 C n 1 84 G n 1 85 A n 1 86 C n 1 87 A n 1 88 G n 1 89 U n 1 90 A n 1 91 G n 1 92 A n 1 93 G n 1 94 U n 1 95 C n 1 96 U n 1 97 G n 1 98 G n 1 99 A n 1 100 U n 1 101 G n 1 102 A n 1 103 G n 1 104 A n 1 105 G n 1 106 A n 1 107 A n 1 108 G n 1 109 A n 1 110 U n 1 111 U n 1 112 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 112 _pdbx_entity_src_syn.organism_scientific 'Fusobacterium nucleatum' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 851 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code CP012717.1 _struct_ref.pdbx_db_accession 929732263 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGUAUUUGCUUUGAUUUGGUGAAAUUCCAAAAC CGACAGUAGAGUCUGGAUGAGAGAAGA ; _struct_ref.pdbx_align_begin 1175397 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6WJS _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 109 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 929732263 _struct_ref_seq.db_align_beg 1175397 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1175503 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 109 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6WJS G X 1 ? GB 929732263 ? ? 'cloning artifact' 1 1 1 6WJS G X 2 ? GB 929732263 ? ? 'cloning artifact' 2 2 1 6WJS U X 110 ? GB 929732263 ? ? 'cloning artifact' 110 3 1 6WJS U X 111 ? GB 929732263 ? ? 'cloning artifact' 111 4 1 6WJS C X 112 ? GB 929732263 ? ? 'cloning artifact' 112 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6WJS _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.81 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 67.70 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 9 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M SPG (succinic acid, sodium phosphate monobasic monohydrate, glycine; 2:7:7 ratio), pH 9.0, and 25 % PEG 1500' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-08-17 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.60747 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.60747 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 133.182 _reflns.entry_id 6WJS _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.800 _reflns.d_resolution_low 41.790 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5669 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.500 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.090 _reflns.pdbx_Rmerge_I_obs 0.147 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 5.160 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.006 _reflns.pdbx_scaling_rejects 5 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.177 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 17520 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 3.800 3.900 ? 0.860 ? 1370 428 ? 425 99.300 ? ? ? ? 1.527 ? ? ? ? ? ? ? ? 3.224 ? ? ? ? 1.832 ? ? 1 1 0.183 ? ? 3.900 4.010 ? 0.730 ? 1289 402 ? 400 99.500 ? ? ? ? 1.655 ? ? ? ? ? ? ? ? 3.223 ? ? ? ? 1.978 ? ? 2 1 0.239 ? ? 4.010 4.120 ? 1.010 ? 1259 392 ? 383 97.700 ? ? ? ? 1.179 ? ? ? ? ? ? ? ? 3.287 ? ? ? ? 1.408 ? ? 3 1 0.317 ? ? 4.120 4.250 ? 1.120 ? 1184 365 ? 359 98.400 ? ? ? ? 1.086 ? ? ? ? ? ? ? ? 3.298 ? ? ? ? 1.297 ? ? 4 1 0.457 ? ? 4.250 4.390 ? 1.240 ? 1197 386 ? 384 99.500 ? ? ? ? 0.981 ? ? ? ? ? ? ? ? 3.117 ? ? ? ? 1.177 ? ? 5 1 0.410 ? ? 4.390 4.540 ? 1.700 ? 1077 378 ? 364 96.300 ? ? ? ? 0.732 ? ? ? ? ? ? ? ? 2.959 ? ? ? ? 0.881 ? ? 6 1 0.627 ? ? 4.540 4.710 ? 1.790 ? 941 322 ? 314 97.500 ? ? ? ? 0.691 ? ? ? ? ? ? ? ? 2.997 ? ? ? ? 0.830 ? ? 7 1 0.648 ? ? 4.710 4.910 ? 2.420 ? 1115 347 ? 343 98.800 ? ? ? ? 0.519 ? ? ? ? ? ? ? ? 3.251 ? ? ? ? 0.624 ? ? 8 1 0.769 ? ? 4.910 5.120 ? 3.250 ? 1056 341 ? 338 99.100 ? ? ? ? 0.377 ? ? ? ? ? ? ? ? 3.124 ? ? ? ? 0.454 ? ? 9 1 0.798 ? ? 5.120 5.370 ? 3.330 ? 941 298 ? 293 98.300 ? ? ? ? 0.371 ? ? ? ? ? ? ? ? 3.212 ? ? ? ? 0.446 ? ? 10 1 0.870 ? ? 5.370 5.670 ? 4.040 ? 930 297 ? 295 99.300 ? ? ? ? 0.335 ? ? ? ? ? ? ? ? 3.153 ? ? ? ? 0.404 ? ? 11 1 0.878 ? ? 5.670 6.010 ? 4.630 ? 900 299 ? 290 97.000 ? ? ? ? 0.270 ? ? ? ? ? ? ? ? 3.103 ? ? ? ? 0.325 ? ? 12 1 0.899 ? ? 6.010 6.420 ? 6.090 ? 761 253 ? 241 95.300 ? ? ? ? 0.201 ? ? ? ? ? ? ? ? 3.158 ? ? ? ? 0.240 ? ? 13 1 0.969 ? ? 6.420 6.940 ? 6.050 ? 644 256 ? 238 93.000 ? ? ? ? 0.181 ? ? ? ? ? ? ? ? 2.706 ? ? ? ? 0.222 ? ? 14 1 0.965 ? ? 6.940 7.600 ? 10.120 ? 708 236 ? 234 99.200 ? ? ? ? 0.106 ? ? ? ? ? ? ? ? 3.026 ? ? ? ? 0.129 ? ? 15 1 0.985 ? ? 7.600 8.500 ? 12.210 ? 652 214 ? 210 98.100 ? ? ? ? 0.089 ? ? ? ? ? ? ? ? 3.105 ? ? ? ? 0.108 ? ? 16 1 0.991 ? ? 8.500 9.810 ? 14.550 ? 521 193 ? 186 96.400 ? ? ? ? 0.067 ? ? ? ? ? ? ? ? 2.801 ? ? ? ? 0.083 ? ? 17 1 0.994 ? ? 9.810 12.020 ? 23.000 ? 448 183 ? 170 92.900 ? ? ? ? 0.034 ? ? ? ? ? ? ? ? 2.635 ? ? ? ? 0.042 ? ? 18 1 0.998 ? ? 12.020 17.000 ? 30.130 ? 332 133 ? 124 93.200 ? ? ? ? 0.024 ? ? ? ? ? ? ? ? 2.677 ? ? ? ? 0.030 ? ? 19 1 0.999 ? ? 17.000 41.790 ? 32.360 ? 195 90 ? 78 86.700 ? ? ? ? 0.015 ? ? ? ? ? ? ? ? 2.500 ? ? ? ? 0.019 ? ? 20 1 0.999 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 239.410 _refine.B_iso_mean 131.2073 _refine.B_iso_min 80.330 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6WJS _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.8000 _refine.ls_d_res_low 41.7900 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5642 _refine.ls_number_reflns_R_free 258 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.5100 _refine.ls_percent_reflns_R_free 4.5700 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2724 _refine.ls_R_factor_R_free 0.3275 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2701 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 3F2Q _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 23.9300 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.7700 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 3.8000 _refine_hist.d_res_low 41.7900 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2347 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 109 _refine_hist.pdbx_B_iso_mean_ligand 111.47 _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2342 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.002 ? 2627 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.846 ? 4097 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 20.311 ? 1305 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.083 ? 545 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.002 ? 109 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 3.8000 3.9400 558 . 27 531 99.0000 . . . 0.3551 0.0000 0.3950 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 3.9400 4.0900 564 . 38 526 99.0000 . . . 0.3839 0.0000 0.3402 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 4.0900 4.2800 524 . 20 504 98.0000 . . . 0.5276 0.0000 0.3212 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 4.2800 4.5000 581 . 31 550 98.0000 . . . 0.4660 0.0000 0.3358 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 4.5100 4.7900 527 . 13 514 97.0000 . . . 0.2791 0.0000 0.2785 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 4.7900 5.1500 585 . 36 549 99.0000 . . . 0.3260 0.0000 0.2614 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 5.1600 5.6700 552 . 28 524 99.0000 . . . 0.3242 0.0000 0.2183 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 5.6700 6.4900 561 . 21 540 97.0000 . . . 0.2721 0.0000 0.1971 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 6.4900 8.1700 577 . 21 556 96.0000 . . . 0.2683 0.0000 0.1949 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 8.1800 41.7900 613 . 23 590 95.0000 . . . 0.2940 0.0000 0.2896 . . . . . . . 10 . . . # _struct.entry_id 6WJS _struct.title 'Apo structure of the FMN riboswitch aptamer domain in the presence of phosphate' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6WJS _struct_keywords.text 'riboswitch, RNA conformation, apo, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A A 3 N6 ? ? ? 1_555 A A 109 N1 ? ? X A 3 X A 109 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog2 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 108 N1 ? ? X C 5 X G 108 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog3 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 107 N1 ? ? X U 6 X A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 107 N6 ? ? X U 6 X A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 106 N1 ? ? X U 7 X A 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 106 N6 ? ? X U 7 X A 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 105 N1 ? ? X C 8 X G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 105 O6 ? ? X C 8 X G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 105 N2 ? ? X C 8 X G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 9 N2 ? ? ? 1_555 A A 104 N7 ? ? X G 9 X A 104 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog11 hydrog ? ? A G 9 N3 ? ? ? 1_555 A A 104 N6 ? ? X G 9 X A 104 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog12 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 31 O2 ? ? X G 12 X C 31 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog13 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 28 N1 ? ? X C 13 X G 28 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog14 hydrog ? ? A A 14 N6 ? ? ? 1_555 A G 28 N3 ? ? X A 14 X G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog15 hydrog ? ? A A 14 N7 ? ? ? 1_555 A G 28 N2 ? ? X A 14 X G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog16 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 27 N3 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 27 O2 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 27 N4 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 26 N3 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 26 O2 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 26 N4 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 25 N3 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 25 O2 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 25 N4 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 22 N7 ? ? X U 18 X A 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog26 hydrog ? ? A U 18 O2 ? ? ? 1_555 A A 22 N6 ? ? X U 18 X A 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog27 hydrog ? ? A G 19 N2 ? ? ? 1_555 A A 90 N7 ? ? X G 19 X A 90 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog28 hydrog ? ? A G 19 N3 ? ? ? 1_555 A A 90 N6 ? ? X G 19 X A 90 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog29 hydrog ? ? A U 24 N3 ? ? ? 1_555 A U 89 O2 ? ? X U 24 X U 89 1_555 ? ? ? ? ? ? TYPE_13_PAIR ? ? ? hydrog30 hydrog ? ? A U 24 O2 ? ? ? 1_555 A U 89 N3 ? ? X U 24 X U 89 1_555 ? ? ? ? ? ? TYPE_13_PAIR ? ? ? hydrog31 hydrog ? ? A A 29 N1 ? ? ? 1_555 A U 94 N3 ? ? X A 29 X U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A A 29 N6 ? ? ? 1_555 A U 94 O4 ? ? X A 29 X U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 30 N3 ? ? ? 1_555 A G 93 N1 ? ? X C 30 X G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 30 N4 ? ? ? 1_555 A G 93 O6 ? ? X C 30 X G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 30 O2 ? ? ? 1_555 A G 93 N2 ? ? X C 30 X G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 31 O2 ? ? ? 1_555 A G 84 N2 ? ? X C 31 X G 84 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog37 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 83 N3 ? ? X G 32 X C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 83 O2 ? ? X G 32 X C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 83 N4 ? ? X G 32 X C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 33 N1 ? ? ? 1_555 A C 46 N3 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 33 N2 ? ? ? 1_555 A C 46 O2 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 33 O6 ? ? ? 1_555 A C 46 N4 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 33 N2 ? ? ? 1_555 A A 104 N3 ? ? X G 33 X A 104 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog44 hydrog ? ? A U 34 N3 ? ? ? 1_555 A A 45 N1 ? ? X U 34 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A U 34 O4 ? ? ? 1_555 A A 45 N6 ? ? X U 34 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 35 N1 ? ? ? 1_555 A C 44 O2 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog47 hydrog ? ? A G 35 N2 ? ? ? 1_555 A C 44 N3 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog48 hydrog ? ? A G 36 N1 ? ? ? 1_555 A C 43 N3 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 36 N2 ? ? ? 1_555 A C 43 O2 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 36 O6 ? ? ? 1_555 A C 43 N4 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A U 37 N3 ? ? ? 1_555 A A 40 N7 ? ? X U 37 X A 40 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog52 hydrog ? ? A U 37 O2 ? ? ? 1_555 A A 40 N6 ? ? X U 37 X A 40 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog53 hydrog ? ? A A 38 N6 ? ? ? 1_555 A G 70 N3 ? ? X A 38 X G 70 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog54 hydrog ? ? A A 38 N7 ? ? ? 1_555 A G 70 N2 ? ? X A 38 X G 70 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog55 hydrog ? ? A G 41 N2 ? ? ? 1_555 A A 63 N3 ? ? X G 41 X A 63 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog56 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 82 N3 ? ? X G 41 X C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 82 O2 ? ? X G 41 X C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 82 N4 ? ? X G 41 X C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A U 42 N3 ? ? ? 1_555 A A 81 N1 ? ? X U 42 X A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A U 42 O4 ? ? ? 1_555 A A 81 N6 ? ? X U 42 X A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A A 48 N6 ? ? ? 1_555 A U 61 O2 ? ? X A 48 X U 61 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog62 hydrog ? ? A A 49 N1 ? ? ? 1_555 A U 60 N3 ? ? X A 49 X U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A A 49 N6 ? ? ? 1_555 A U 60 O4 ? ? X A 49 X U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A A 50 N1 ? ? ? 1_555 A U 59 N3 ? ? X A 50 X U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A A 50 N6 ? ? ? 1_555 A U 59 O4 ? ? X A 50 X U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 51 N1 ? ? ? 1_555 A C 58 N3 ? ? X G 51 X C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 51 N2 ? ? ? 1_555 A C 58 O2 ? ? X G 51 X C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 51 O6 ? ? ? 1_555 A C 58 N4 ? ? X G 51 X C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A U 52 O4 ? ? ? 1_555 A G 57 N1 ? ? X U 52 X G 57 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog70 hydrog ? ? A G 62 N2 ? ? ? 1_555 A C 83 O2 ? ? X G 62 X C 83 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog71 hydrog ? ? A U 64 N3 ? ? ? 1_555 A A 80 N1 ? ? X U 64 X A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A U 64 O4 ? ? ? 1_555 A A 80 N6 ? ? X U 64 X A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A U 65 N3 ? ? ? 1_555 A A 79 N1 ? ? X U 65 X A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A U 65 O4 ? ? ? 1_555 A A 79 N6 ? ? X U 65 X A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A U 66 N3 ? ? ? 1_555 A A 78 N1 ? ? X U 66 X A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A U 66 O4 ? ? ? 1_555 A A 78 N6 ? ? X U 66 X A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 67 N1 ? ? ? 1_555 A C 77 N3 ? ? X G 67 X C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 67 N2 ? ? ? 1_555 A C 77 O2 ? ? X G 67 X C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 67 O6 ? ? ? 1_555 A C 77 N4 ? ? X G 67 X C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 68 N1 ? ? ? 1_555 A C 76 N3 ? ? X G 68 X C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A G 68 N2 ? ? ? 1_555 A C 76 O2 ? ? X G 68 X C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A G 68 O6 ? ? ? 1_555 A C 76 N4 ? ? X G 68 X C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A U 69 N3 ? ? ? 1_555 A A 73 N7 ? ? X U 69 X A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog84 hydrog ? ? A U 69 O2 ? ? ? 1_555 A A 73 N6 ? ? X U 69 X A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog85 hydrog ? ? A A 85 N1 ? ? ? 1_555 A G 98 N1 ? ? X A 85 X G 98 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog86 hydrog ? ? A A 85 N6 ? ? ? 1_555 A G 98 O6 ? ? X A 85 X G 98 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog87 hydrog ? ? A C 86 N3 ? ? ? 1_555 A G 97 N1 ? ? X C 86 X G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A C 86 N4 ? ? ? 1_555 A G 97 O6 ? ? X C 86 X G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A C 86 O2 ? ? ? 1_555 A G 97 N2 ? ? X C 86 X G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A A 87 N1 ? ? ? 1_555 A U 96 N3 ? ? X A 87 X U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A A 87 N6 ? ? ? 1_555 A U 96 O4 ? ? X A 87 X U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A G 88 N1 ? ? ? 1_555 A C 95 N3 ? ? X G 88 X C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A G 88 N2 ? ? ? 1_555 A C 95 O2 ? ? X G 88 X C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A G 88 O6 ? ? ? 1_555 A C 95 N4 ? ? X G 88 X C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A U 89 N3 ? ? ? 1_555 A A 92 N7 ? ? X U 89 X A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog96 hydrog ? ? A U 89 O2 ? ? ? 1_555 A A 92 N6 ? ? X U 89 X A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id X _struct_site.pdbx_auth_comp_id PO4 _struct_site.pdbx_auth_seq_id 201 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'binding site for residue PO4 X 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 G A 10 ? G X 10 . ? 1_555 ? 2 AC1 4 G A 11 ? G X 11 . ? 1_555 ? 3 AC1 4 G A 32 ? G X 32 . ? 1_555 ? 4 AC1 4 G A 62 ? G X 62 . ? 1_555 ? # _atom_sites.entry_id 6WJS _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.013591 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027816 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004924 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G X . n A 1 2 G 2 2 2 G G X . n A 1 3 A 3 3 3 A A X . n A 1 4 U 4 4 4 U U X . n A 1 5 C 5 5 5 C C X . n A 1 6 U 6 6 6 U U X . n A 1 7 U 7 7 7 U U X . n A 1 8 C 8 8 8 C C X . n A 1 9 G 9 9 9 G G X . n A 1 10 G 10 10 10 G G X . n A 1 11 G 11 11 11 G G X . n A 1 12 G 12 12 12 G G X . n A 1 13 C 13 13 13 C C X . n A 1 14 A 14 14 14 A A X . n A 1 15 G 15 15 15 G G X . n A 1 16 G 16 16 16 G G X . n A 1 17 G 17 17 17 G G X . n A 1 18 U 18 18 18 U U X . n A 1 19 G 19 19 19 G G X . n A 1 20 A 20 20 20 A A X . n A 1 21 A 21 21 21 A A X . n A 1 22 A 22 22 22 A A X . n A 1 23 U 23 23 23 U U X . n A 1 24 U 24 24 24 U U X . n A 1 25 C 25 25 25 C C X . n A 1 26 C 26 26 26 C C X . n A 1 27 C 27 27 27 C C X . n A 1 28 G 28 28 28 G G X . n A 1 29 A 29 29 29 A A X . n A 1 30 C 30 30 30 C C X . n A 1 31 C 31 31 31 C C X . n A 1 32 G 32 32 32 G G X . n A 1 33 G 33 33 33 G G X . n A 1 34 U 34 34 34 U U X . n A 1 35 G 35 35 35 G G X . n A 1 36 G 36 36 36 G G X . n A 1 37 U 37 37 37 U U X . n A 1 38 A 38 38 38 A A X . n A 1 39 U 39 39 39 U U X . n A 1 40 A 40 40 40 A A X . n A 1 41 G 41 41 41 G G X . n A 1 42 U 42 42 42 U U X . n A 1 43 C 43 43 43 C C X . n A 1 44 C 44 44 44 C C X . n A 1 45 A 45 45 45 A A X . n A 1 46 C 46 46 46 C C X . n A 1 47 G 47 47 47 G G X . n A 1 48 A 48 48 48 A A X . n A 1 49 A 49 49 49 A A X . n A 1 50 A 50 50 50 A A X . n A 1 51 G 51 51 51 G G X . n A 1 52 U 52 52 52 U U X . n A 1 53 A 53 53 53 A A X . n A 1 54 U 54 54 54 U U X . n A 1 55 U 55 55 55 U U X . n A 1 56 U 56 56 56 U U X . n A 1 57 G 57 57 57 G G X . n A 1 58 C 58 58 58 C C X . n A 1 59 U 59 59 59 U U X . n A 1 60 U 60 60 60 U U X . n A 1 61 U 61 61 61 U U X . n A 1 62 G 62 62 62 G G X . n A 1 63 A 63 63 63 A A X . n A 1 64 U 64 64 64 U U X . n A 1 65 U 65 65 65 U U X . n A 1 66 U 66 66 66 U U X . n A 1 67 G 67 67 67 G G X . n A 1 68 G 68 68 68 G G X . n A 1 69 U 69 69 69 U U X . n A 1 70 G 70 70 70 G G X . n A 1 71 A 71 71 71 A A X . n A 1 72 A 72 72 72 A A X . n A 1 73 A 73 73 73 A A X . n A 1 74 U 74 74 74 U U X . n A 1 75 U 75 75 75 U U X . n A 1 76 C 76 76 76 C C X . n A 1 77 C 77 77 77 C C X . n A 1 78 A 78 78 78 A A X . n A 1 79 A 79 79 79 A A X . n A 1 80 A 80 80 80 A A X . n A 1 81 A 81 81 81 A A X . n A 1 82 C 82 82 82 C C X . n A 1 83 C 83 83 83 C C X . n A 1 84 G 84 84 84 G G X . n A 1 85 A 85 85 85 A A X . n A 1 86 C 86 86 86 C C X . n A 1 87 A 87 87 87 A A X . n A 1 88 G 88 88 88 G G X . n A 1 89 U 89 89 89 U U X . n A 1 90 A 90 90 90 A A X . n A 1 91 G 91 91 91 G G X . n A 1 92 A 92 92 92 A A X . n A 1 93 G 93 93 93 G G X . n A 1 94 U 94 94 94 U U X . n A 1 95 C 95 95 95 C C X . n A 1 96 U 96 96 96 U U X . n A 1 97 G 97 97 97 G G X . n A 1 98 G 98 98 98 G G X . n A 1 99 A 99 99 99 A A X . n A 1 100 U 100 100 100 U U X . n A 1 101 G 101 101 101 G G X . n A 1 102 A 102 102 102 A A X . n A 1 103 G 103 103 103 G G X . n A 1 104 A 104 104 104 A A X . n A 1 105 G 105 105 105 G G X . n A 1 106 A 106 106 106 A A X . n A 1 107 A 107 107 107 A A X . n A 1 108 G 108 108 108 G G X . n A 1 109 A 109 109 109 A A X . n A 1 110 U 110 110 ? ? ? X . n A 1 111 U 111 111 ? ? ? X . n A 1 112 C 112 112 ? ? ? X . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id PO4 _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 201 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id PO4 _pdbx_nonpoly_scheme.auth_mon_id PO4 _pdbx_nonpoly_scheme.pdb_strand_id X _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-09-02 2 'Structure model' 1 1 2020-09-23 3 'Structure model' 1 2 2020-11-11 4 'Structure model' 1 3 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' audit_author 2 3 'Structure model' citation 3 3 'Structure model' citation_author 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_volume' 2 3 'Structure model' '_citation.page_first' 3 3 'Structure model' '_citation.page_last' 4 3 'Structure model' '_citation.pdbx_database_id_PubMed' 5 3 'Structure model' '_citation.title' 6 3 'Structure model' '_citation_author.name' 7 4 'Structure model' '_database_2.pdbx_DOI' 8 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 11.504 _pdbx_refine_tls.origin_y -15.607 _pdbx_refine_tls.origin_z -30.141 _pdbx_refine_tls.T[1][1] 0.0000 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] 0.0000 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] 0.0000 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.0000 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] 0.0000 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.0000 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 0.0000 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] 0.0000 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] 0.0000 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 0.0000 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] 0.0000 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 0.0000 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] 0.0000 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] 0.0000 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] 0.0000 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] 0.0000 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] 0.0000 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] 0.0000 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.0000 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] 0.0000 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] 0.0000 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id X _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id X _pdbx_refine_tls_group.end_auth_seq_id 109 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details '( CHAIN X AND RESID 1:109 )' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.18rc5-3822 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_entry_details.entry_id 6WJS _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O6 _pdbx_validate_close_contact.auth_asym_id_1 X _pdbx_validate_close_contact.auth_comp_id_1 G _pdbx_validate_close_contact.auth_seq_id_1 35 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 N4 _pdbx_validate_close_contact.auth_asym_id_2 X _pdbx_validate_close_contact.auth_comp_id_2 C _pdbx_validate_close_contact.auth_seq_id_2 44 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 "O2'" _pdbx_validate_symm_contact.auth_asym_id_1 X _pdbx_validate_symm_contact.auth_comp_id_1 C _pdbx_validate_symm_contact.auth_seq_id_1 58 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O2 _pdbx_validate_symm_contact.auth_asym_id_2 X _pdbx_validate_symm_contact.auth_comp_id_2 U _pdbx_validate_symm_contact.auth_seq_id_2 100 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_545 _pdbx_validate_symm_contact.dist 1.86 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 X _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 X _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.480 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.127 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 X U 110 ? A U 110 2 1 Y 1 X U 111 ? A U 111 3 1 Y 1 X C 112 ? A C 112 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 PO4 P P N N 111 PO4 O1 O N N 112 PO4 O2 O N N 113 PO4 O3 O N N 114 PO4 O4 O N N 115 U OP3 O N N 116 U P P N N 117 U OP1 O N N 118 U OP2 O N N 119 U "O5'" O N N 120 U "C5'" C N N 121 U "C4'" C N R 122 U "O4'" O N N 123 U "C3'" C N S 124 U "O3'" O N N 125 U "C2'" C N R 126 U "O2'" O N N 127 U "C1'" C N R 128 U N1 N N N 129 U C2 C N N 130 U O2 O N N 131 U N3 N N N 132 U C4 C N N 133 U O4 O N N 134 U C5 C N N 135 U C6 C N N 136 U HOP3 H N N 137 U HOP2 H N N 138 U "H5'" H N N 139 U "H5''" H N N 140 U "H4'" H N N 141 U "H3'" H N N 142 U "HO3'" H N N 143 U "H2'" H N N 144 U "HO2'" H N N 145 U "H1'" H N N 146 U H3 H N N 147 U H5 H N N 148 U H6 H N N 149 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 PO4 P O1 doub N N 116 PO4 P O2 sing N N 117 PO4 P O3 sing N N 118 PO4 P O4 sing N N 119 U OP3 P sing N N 120 U OP3 HOP3 sing N N 121 U P OP1 doub N N 122 U P OP2 sing N N 123 U P "O5'" sing N N 124 U OP2 HOP2 sing N N 125 U "O5'" "C5'" sing N N 126 U "C5'" "C4'" sing N N 127 U "C5'" "H5'" sing N N 128 U "C5'" "H5''" sing N N 129 U "C4'" "O4'" sing N N 130 U "C4'" "C3'" sing N N 131 U "C4'" "H4'" sing N N 132 U "O4'" "C1'" sing N N 133 U "C3'" "O3'" sing N N 134 U "C3'" "C2'" sing N N 135 U "C3'" "H3'" sing N N 136 U "O3'" "HO3'" sing N N 137 U "C2'" "O2'" sing N N 138 U "C2'" "C1'" sing N N 139 U "C2'" "H2'" sing N N 140 U "O2'" "HO2'" sing N N 141 U "C1'" N1 sing N N 142 U "C1'" "H1'" sing N N 143 U N1 C2 sing N N 144 U N1 C6 sing N N 145 U C2 O2 doub N N 146 U C2 N3 sing N N 147 U N3 C4 sing N N 148 U N3 H3 sing N N 149 U C4 O4 doub N N 150 U C4 C5 sing N N 151 U C5 C6 doub N N 152 U C5 H5 sing N N 153 U C6 H6 sing N N 154 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6WJS 'double helix' 6WJS 'a-form double helix' 6WJS 'hairpin loop' 6WJS 'bulge loop' 6WJS 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 3 1_555 A A 109 1_555 -2.574 2.495 0.855 3.463 56.685 -58.083 1 X_A3:A109_X X 3 ? X 109 ? ? ? 1 A C 5 1_555 A G 108 1_555 2.679 -1.285 0.979 29.666 -15.667 -18.541 2 X_C5:G108_X X 5 ? X 108 ? ? 1 1 A U 6 1_555 A A 107 1_555 -0.551 0.376 -1.018 44.820 -16.355 13.204 3 X_U6:A107_X X 6 ? X 107 ? 20 1 1 A U 7 1_555 A A 106 1_555 -0.381 -0.321 0.628 12.706 0.315 5.482 4 X_U7:A106_X X 7 ? X 106 ? 20 1 1 A C 8 1_555 A G 105 1_555 -0.496 -0.060 0.747 -9.650 6.737 11.733 5 X_C8:G105_X X 8 ? X 105 ? 19 1 1 A G 9 1_555 A A 104 1_555 6.591 -4.373 1.078 -31.062 -53.008 -12.308 6 X_G9:A104_X X 9 ? X 104 ? 11 10 1 A A 38 1_555 A G 70 1_555 -6.910 -3.540 -0.732 -38.024 37.750 1.034 7 X_A38:G70_X X 38 ? X 70 ? 11 10 1 A A 73 1_555 A U 69 1_555 -3.925 -1.380 1.364 5.903 40.242 -86.107 8 X_A73:U69_X X 73 ? X 69 ? 24 4 1 A C 76 1_555 A G 68 1_555 -0.342 -0.101 0.179 19.770 -3.706 -8.959 9 X_C76:G68_X X 76 ? X 68 ? 19 1 1 A C 77 1_555 A G 67 1_555 0.238 -0.594 0.237 -10.775 1.857 -2.140 10 X_C77:G67_X X 77 ? X 67 ? 19 1 1 A A 78 1_555 A U 66 1_555 -0.533 -0.743 -0.138 -2.241 -7.759 -8.618 11 X_A78:U66_X X 78 ? X 66 ? 20 1 1 A A 79 1_555 A U 65 1_555 0.264 0.013 -0.240 9.837 -4.129 -0.399 12 X_A79:U65_X X 79 ? X 65 ? 20 1 1 A A 80 1_555 A U 64 1_555 0.339 0.159 -0.638 15.055 -13.458 22.335 13 X_A80:U64_X X 80 ? X 64 ? 20 1 1 A A 81 1_555 A U 42 1_555 0.221 -0.299 -1.372 -19.551 -13.634 -1.433 14 X_A81:U42_X X 81 ? X 42 ? 20 1 1 A C 82 1_555 A G 41 1_555 -0.365 -0.139 -0.020 2.866 -4.240 -9.712 15 X_C82:G41_X X 82 ? X 41 ? 19 1 1 A C 83 1_555 A G 32 1_555 0.666 -0.077 0.219 -25.466 11.984 -2.683 16 X_C83:G32_X X 83 ? X 32 ? 19 1 1 A G 84 1_555 A C 31 1_555 0.276 0.651 -0.232 -3.532 -4.394 10.258 17 X_G84:C31_X X 84 ? X 31 ? ? 1 1 A G 93 1_555 A C 30 1_555 0.033 0.003 -0.495 -15.448 -13.838 1.855 18 X_G93:C30_X X 93 ? X 30 ? 19 1 1 A U 94 1_555 A A 29 1_555 -0.322 0.350 -0.107 6.605 16.778 -2.729 19 X_U94:A29_X X 94 ? X 29 ? 20 1 1 A C 13 1_555 A G 28 1_555 3.129 0.312 -0.229 3.184 -1.007 41.494 20 X_C13:G28_X X 13 ? X 28 ? ? 5 1 A G 15 1_555 A C 27 1_555 0.169 0.331 -0.633 3.473 1.280 8.836 21 X_G15:C27_X X 15 ? X 27 ? 19 1 1 A G 16 1_555 A C 26 1_555 0.023 -0.027 0.393 10.918 7.921 4.159 22 X_G16:C26_X X 16 ? X 26 ? 19 1 1 A G 17 1_555 A C 25 1_555 0.632 -0.114 -0.219 -2.249 11.580 -5.954 23 X_G17:C25_X X 17 ? X 25 ? 19 1 1 A U 18 1_555 A A 22 1_555 3.891 -1.366 0.264 10.864 12.325 -96.618 24 X_U18:A22_X X 18 ? X 22 ? 24 4 1 A G 19 1_555 A A 90 1_555 6.933 -3.851 -0.370 45.979 24.484 1.577 25 X_G19:A90_X X 19 ? X 90 ? 11 10 1 A G 33 1_555 A C 46 1_555 -0.275 -0.604 -0.406 -11.599 -2.127 -9.227 26 X_G33:C46_X X 33 ? X 46 ? 19 1 1 A U 34 1_555 A A 45 1_555 0.110 -0.011 -0.199 2.927 -19.546 5.659 27 X_U34:A45_X X 34 ? X 45 ? 20 1 1 A G 35 1_555 A C 44 1_555 0.435 -0.628 -0.215 -0.248 0.538 -6.571 28 X_G35:C44_X X 35 ? X 44 ? 22 1 1 A G 36 1_555 A C 43 1_555 0.022 -0.165 -0.233 0.145 -3.199 -1.300 29 X_G36:C43_X X 36 ? X 43 ? 19 1 1 A U 37 1_555 A A 40 1_555 3.675 -2.138 -2.112 10.950 -14.932 -92.968 30 X_U37:A40_X X 37 ? X 40 ? 24 4 1 A A 48 1_555 A U 61 1_555 -5.263 -1.481 -0.086 -3.491 -6.199 6.508 31 X_A48:U61_X X 48 ? X 61 ? ? ? 1 A A 49 1_555 A U 60 1_555 -0.073 -0.374 0.922 1.927 -4.082 -1.670 32 X_A49:U60_X X 49 ? X 60 ? 20 1 1 A A 50 1_555 A U 59 1_555 0.273 -0.432 0.703 -0.418 -4.165 -2.098 33 X_A50:U59_X X 50 ? X 59 ? 20 1 1 A G 51 1_555 A C 58 1_555 -0.117 -0.037 -0.489 -18.564 -18.204 -4.108 34 X_G51:C58_X X 51 ? X 58 ? 19 1 1 A U 52 1_555 A G 57 1_555 -3.301 1.836 -0.673 13.011 4.618 -109.254 35 X_U52:G57_X X 52 ? X 57 ? ? 4 1 A A 85 1_555 A G 98 1_555 0.378 1.407 0.398 -0.155 -8.913 -29.233 36 X_A85:G98_X X 85 ? X 98 ? 8 1 1 A C 86 1_555 A G 97 1_555 -0.333 -0.255 0.546 17.620 -12.329 3.800 37 X_C86:G97_X X 86 ? X 97 ? 19 1 1 A A 87 1_555 A U 96 1_555 0.237 -0.351 -0.997 -0.447 -26.788 0.704 38 X_A87:U96_X X 87 ? X 96 ? 20 1 1 A G 88 1_555 A C 95 1_555 -0.083 -0.100 0.683 -8.181 -10.540 -2.630 39 X_G88:C95_X X 88 ? X 95 ? 19 1 1 A U 89 1_555 A A 92 1_555 4.307 -2.445 1.542 8.540 0.582 -87.547 40 X_U89:A92_X X 89 ? X 92 ? 24 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 3 1_555 A A 109 1_555 A C 5 1_555 A G 108 1_555 0.893 -2.945 4.302 14.549 3.536 78.030 -2.436 -0.178 4.274 2.784 -11.457 79.228 1 XX_A3C5:G108A109_XX X 3 ? X 109 ? X 5 ? X 108 ? 1 A C 5 1_555 A G 108 1_555 A U 6 1_555 A A 107 1_555 0.477 -2.122 3.000 18.960 -0.282 15.900 -4.875 4.654 2.328 -0.749 -50.364 24.699 2 XX_C5U6:A107G108_XX X 5 ? X 108 ? X 6 ? X 107 ? 1 A U 6 1_555 A A 107 1_555 A U 7 1_555 A A 106 1_555 0.025 -1.638 4.494 -13.531 11.660 31.035 -4.861 -2.580 3.392 19.864 23.052 35.698 3 XX_U6U7:A106A107_XX X 6 ? X 107 ? X 7 ? X 106 ? 1 A U 7 1_555 A A 106 1_555 A C 8 1_555 A G 105 1_555 0.499 -1.651 3.516 0.080 9.801 36.923 -3.780 -0.753 2.998 15.150 -0.123 38.158 4 XX_U7C8:G105A106_XX X 7 ? X 106 ? X 8 ? X 105 ? 1 A C 8 1_555 A G 105 1_555 A G 9 1_555 A A 104 1_555 -3.888 -0.813 3.460 13.209 23.966 56.302 -1.788 4.320 2.118 23.904 -13.175 62.107 5 XX_C8G9:A104G105_XX X 8 ? X 105 ? X 9 ? X 104 ? 1 A A 38 1_555 A G 70 1_555 A A 73 1_555 A U 69 1_555 -1.821 -0.495 2.121 -0.187 -10.183 -2.673 11.727 -10.088 0.028 75.320 -1.383 -10.529 6 XX_A38A73:U69G70_XX X 38 ? X 70 ? X 73 ? X 69 ? 1 A A 73 1_555 A U 69 1_555 A C 76 1_555 A G 68 1_555 2.283 -1.715 3.330 -2.419 -4.472 75.333 -1.263 -1.940 3.349 -3.655 1.977 75.479 7 XX_A73C76:G68U69_XX X 73 ? X 69 ? X 76 ? X 68 ? 1 A C 76 1_555 A G 68 1_555 A C 77 1_555 A G 67 1_555 0.281 -3.165 3.880 1.209 7.156 37.579 -5.821 -0.262 3.253 10.983 -1.855 38.248 8 XX_C76C77:G67G68_XX X 76 ? X 68 ? X 77 ? X 67 ? 1 A C 77 1_555 A G 67 1_555 A A 78 1_555 A U 66 1_555 -0.392 -1.287 2.937 4.776 12.160 27.905 -4.359 1.498 2.112 23.644 -9.286 30.757 9 XX_C77A78:U66G67_XX X 77 ? X 67 ? X 78 ? X 66 ? 1 A A 78 1_555 A U 66 1_555 A A 79 1_555 A U 65 1_555 1.064 -0.967 2.993 2.236 7.032 40.703 -2.049 -1.292 2.846 10.011 -3.184 41.339 10 XX_A78A79:U65U66_XX X 78 ? X 66 ? X 79 ? X 65 ? 1 A A 79 1_555 A U 65 1_555 A A 80 1_555 A U 64 1_555 1.513 -0.710 3.243 16.143 6.610 26.852 -2.610 0.470 3.344 12.677 -30.958 31.933 11 XX_A79A80:U64U65_XX X 79 ? X 65 ? X 80 ? X 64 ? 1 A A 80 1_555 A U 64 1_555 A A 81 1_555 A U 42 1_555 -0.290 -2.362 4.421 3.733 10.579 21.006 -9.836 2.151 2.827 26.702 -9.423 23.784 12 XX_A80A81:U42U64_XX X 80 ? X 64 ? X 81 ? X 42 ? 1 A A 81 1_555 A U 42 1_555 A C 82 1_555 A G 41 1_555 0.728 -1.295 2.673 -14.183 2.506 32.007 -2.438 -2.833 2.072 4.283 24.247 35.021 13 XX_A81C82:G41U42_XX X 81 ? X 42 ? X 82 ? X 41 ? 1 A C 82 1_555 A G 41 1_555 A C 83 1_555 A G 32 1_555 -0.259 -2.833 3.794 -1.222 8.442 36.909 -5.526 0.231 3.101 13.121 1.900 37.848 14 XX_C82C83:G32G41_XX X 82 ? X 41 ? X 83 ? X 32 ? 1 A C 83 1_555 A G 32 1_555 A G 84 1_555 A C 31 1_555 0.425 0.116 2.509 3.046 23.468 30.298 -2.166 -0.344 2.103 38.396 -4.983 38.274 15 XX_C83G84:C31G32_XX X 83 ? X 32 ? X 84 ? X 31 ? 1 A G 84 1_555 A C 31 1_555 A G 93 1_555 A C 30 1_555 -0.264 -1.799 3.550 -3.005 0.017 29.369 -3.535 -0.177 3.558 0.034 5.907 29.519 16 XX_G84G93:C30C31_XX X 84 ? X 31 ? X 93 ? X 30 ? 1 A G 93 1_555 A C 30 1_555 A U 94 1_555 A A 29 1_555 -1.246 -1.195 2.530 -9.547 2.811 35.096 -2.227 0.919 2.667 4.550 15.452 36.437 17 XX_G93U94:A29C30_XX X 93 ? X 30 ? X 94 ? X 29 ? 1 A U 94 1_555 A A 29 1_555 A C 13 1_555 A G 28 1_555 0.646 -1.523 3.356 -2.038 -5.621 52.562 -1.331 -0.863 3.465 -6.324 2.293 52.877 18 XX_U94C13:G28A29_XX X 94 ? X 29 ? X 13 ? X 28 ? 1 A C 13 1_555 A G 28 1_555 A G 15 1_555 A C 27 1_555 -5.011 0.185 3.255 5.774 9.376 37.197 -0.745 8.185 2.454 14.318 -8.818 38.737 19 XX_C13G15:C27G28_XX X 13 ? X 28 ? X 15 ? X 27 ? 1 A G 15 1_555 A C 27 1_555 A G 16 1_555 A C 26 1_555 -0.329 -2.073 3.114 -5.483 2.672 27.203 -4.901 -0.538 2.910 5.592 11.475 27.865 20 XX_G15G16:C26C27_XX X 15 ? X 27 ? X 16 ? X 26 ? 1 A G 16 1_555 A C 26 1_555 A G 17 1_555 A C 25 1_555 -0.095 -2.385 3.340 6.679 4.349 36.888 -4.241 0.993 2.988 6.776 -10.406 37.710 21 XX_G16G17:C25C26_XX X 16 ? X 26 ? X 17 ? X 25 ? 1 A G 17 1_555 A C 25 1_555 A U 18 1_555 A A 22 1_555 -2.453 -2.249 3.148 6.838 4.480 71.743 -2.046 2.291 2.810 3.811 -5.816 72.145 22 XX_G17U18:A22C25_XX X 17 ? X 25 ? X 18 ? X 22 ? 1 A U 18 1_555 A A 22 1_555 A G 19 1_555 A A 90 1_555 1.932 -0.315 2.488 0.917 -4.902 -2.095 22.983 24.153 0.351 66.078 12.366 -5.409 23 XX_U18G19:A90A22_XX X 18 ? X 22 ? X 19 ? X 90 ? 1 A G 33 1_555 A C 46 1_555 A U 34 1_555 A A 45 1_555 -0.470 -1.639 2.978 2.964 -5.678 35.291 -1.894 1.165 3.147 -9.271 -4.840 35.849 24 XX_G33U34:A45C46_XX X 33 ? X 46 ? X 34 ? X 45 ? 1 A U 34 1_555 A A 45 1_555 A G 35 1_555 A C 44 1_555 -0.736 -1.365 3.422 -7.731 13.157 32.281 -4.139 0.082 2.775 22.184 13.035 35.620 25 XX_U34G35:C44A45_XX X 34 ? X 45 ? X 35 ? X 44 ? 1 A G 35 1_555 A C 44 1_555 A G 36 1_555 A C 43 1_555 0.980 -2.017 3.245 1.460 5.626 30.077 -4.867 -1.583 2.872 10.715 -2.781 30.620 26 XX_G35G36:C43C44_XX X 35 ? X 44 ? X 36 ? X 43 ? 1 A G 36 1_555 A C 43 1_555 A U 37 1_555 A A 40 1_555 -0.887 -1.295 2.833 16.006 -7.410 83.542 -0.810 0.975 2.748 -5.508 -11.897 85.048 27 XX_G36U37:A40C43_XX X 36 ? X 43 ? X 37 ? X 40 ? 1 A A 48 1_555 A U 61 1_555 A A 49 1_555 A U 60 1_555 -0.433 -1.212 3.361 -6.821 -2.818 47.106 -1.263 -0.036 3.451 -3.501 8.474 47.648 28 XX_A48A49:U60U61_XX X 48 ? X 61 ? X 49 ? X 60 ? 1 A A 49 1_555 A U 60 1_555 A A 50 1_555 A U 59 1_555 -0.005 -1.652 3.224 0.979 4.607 39.994 -2.899 0.114 3.023 6.707 -1.425 40.259 29 XX_A49A50:U59U60_XX X 49 ? X 60 ? X 50 ? X 59 ? 1 A A 50 1_555 A U 59 1_555 A G 51 1_555 A C 58 1_555 -0.235 -1.294 3.702 9.343 20.446 34.624 -4.136 1.382 2.463 30.684 -14.022 41.093 30 XX_A50G51:C58U59_XX X 50 ? X 59 ? X 51 ? X 58 ? 1 A G 51 1_555 A C 58 1_555 A U 52 1_555 A G 57 1_555 -2.017 0.565 2.898 4.084 -0.684 -16.799 -1.469 -4.252 3.310 2.297 13.711 -17.299 31 XX_G51U52:G57C58_XX X 51 ? X 58 ? X 52 ? X 57 ? 1 A A 85 1_555 A G 98 1_555 A C 86 1_555 A G 97 1_555 1.400 -1.600 2.506 -6.385 2.313 30.240 -3.310 -3.490 2.050 4.364 12.048 30.975 32 XX_A85C86:G97G98_XX X 85 ? X 98 ? X 86 ? X 97 ? 1 A C 86 1_555 A G 97 1_555 A A 87 1_555 A U 96 1_555 -0.770 -1.365 3.607 6.733 17.614 33.621 -4.249 2.001 2.432 27.895 -10.663 38.415 33 XX_C86A87:U96G97_XX X 86 ? X 97 ? X 87 ? X 96 ? 1 A A 87 1_555 A U 96 1_555 A G 88 1_555 A C 95 1_555 -0.269 -1.350 3.274 -9.692 9.175 37.494 -3.020 -0.696 2.860 13.751 14.526 39.717 34 XX_A87G88:C95U96_XX X 87 ? X 96 ? X 88 ? X 95 ? 1 A G 88 1_555 A C 95 1_555 A U 89 1_555 A A 92 1_555 -1.637 -1.547 3.266 -3.728 4.190 82.293 -1.277 1.150 3.257 3.181 2.830 82.450 35 XX_G88U89:A92C95_XX X 88 ? X 95 ? X 89 ? X 92 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'PHOSPHATE ION' _pdbx_entity_nonpoly.comp_id PO4 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3F2Q _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? #