data_6WK7 # _entry.id 6WK7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6WK7 pdb_00006wk7 10.2210/pdb6wk7/pdb WWPDB D_1000248473 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6WK7 _pdbx_database_status.recvd_initial_deposition_date 2020-04-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Li, Q.' 1 ? 'Zhao, J.' 2 ? 'Liu, L.' 3 ? 'Mandal, S.' 4 ? 'Rizzuto, F.J.' 5 ? 'He, H.' 6 ? 'Wei, S.' 7 ? 'Jonchhe, S.' 8 ? 'Sleiman, H.F.' 9 ? 'Mao, H.' 10 ? 'Mao, C.' 11 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Mater' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1476-1122 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 19 _citation.language ? _citation.page_first 1012 _citation.page_last 1018 _citation.title 'A poly(thymine)-melamine duplex for the assembly of DNA nanomaterials.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41563-020-0728-2 _citation.pdbx_database_id_PubMed 32661383 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, Q.' 1 ? primary 'Zhao, J.' 2 ? primary 'Liu, L.' 3 ? primary 'Jonchhe, S.' 4 ? primary 'Rizzuto, F.J.' 5 ? primary 'Mandal, S.' 6 ? primary 'He, H.' 7 ? primary 'Wei, S.' 8 ? primary 'Sleiman, H.F.' 9 ? primary 'Mao, H.' 10 ? primary 'Mao, C.' 11 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6WK7 _cell.details ? _cell.formula_units_Z ? _cell.length_a 67.665 _cell.length_a_esd ? _cell.length_b 67.665 _cell.length_b_esd ? _cell.length_c 67.665 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 48 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WK7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*TP*TP*TP*TP*T)-3') ; 1780.199 2 ? ? ? ? 2 non-polymer syn 1,3,5-triazine-2,4,6-triamine 126.120 6 ? ? ? ? 3 water nat water 18.015 29 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DT)(DT)(DT)(DT)(DT)' _entity_poly.pdbx_seq_one_letter_code_can TTTTTT _entity_poly.pdbx_strand_id B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DT n 1 4 DT n 1 5 DT n 1 6 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6WK7 _struct_ref.pdbx_db_accession 6WK7 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6WK7 B 1 ? 6 ? 6WK7 1 ? 6 ? 1 6 2 1 6WK7 C 1 ? 6 ? 6WK7 1 ? 6 ? 1 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AX2 non-polymer . 1,3,5-triazine-2,4,6-triamine Melamine 'C3 H6 N6' 126.120 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6WK7 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.63 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 66.07 _exptl_crystal.description Cubic-shaped _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'magnesium chloride hexahydrate, MOPS, ammonium sulfate, spermine' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-09-29 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU RUH2R' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate 44.130 _reflns.entry_id 6WK7 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.420 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 2064 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.300 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.700 _reflns.pdbx_Rmerge_I_obs 0.054 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.900 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.973 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.057 _reflns.pdbx_Rpim_I_all 0.017 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 22011 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 2.420 2.460 ? ? ? ? ? ? 89 88.100 ? ? ? ? 0.362 ? ? ? ? ? ? ? ? 9.600 ? 0.862 ? ? 0.382 0.120 ? 1 1 0.949 ? ? 2.460 2.510 ? ? ? ? ? ? 109 100.000 ? ? ? ? 0.351 ? ? ? ? ? ? ? ? 10.700 ? 0.851 ? ? 0.368 0.112 ? 2 1 0.952 ? ? 2.510 2.550 ? ? ? ? ? ? 97 100.000 ? ? ? ? 0.366 ? ? ? ? ? ? ? ? 10.800 ? 0.947 ? ? 0.384 0.117 ? 3 1 0.947 ? ? 2.550 2.610 ? ? ? ? ? ? 100 100.000 ? ? ? ? 0.317 ? ? ? ? ? ? ? ? 11.000 ? 0.994 ? ? 0.332 0.099 ? 4 1 0.973 ? ? 2.610 2.660 ? ? ? ? ? ? 104 100.000 ? ? ? ? 0.272 ? ? ? ? ? ? ? ? 10.600 ? 0.932 ? ? 0.286 0.087 ? 5 1 0.972 ? ? 2.660 2.730 ? ? ? ? ? ? 97 100.000 ? ? ? ? 0.320 ? ? ? ? ? ? ? ? 10.800 ? 1.078 ? ? 0.336 0.102 ? 6 1 0.969 ? ? 2.730 2.790 ? ? ? ? ? ? 105 100.000 ? ? ? ? 0.200 ? ? ? ? ? ? ? ? 10.900 ? 0.922 ? ? 0.210 0.063 ? 7 1 0.985 ? ? 2.790 2.870 ? ? ? ? ? ? 101 100.000 ? ? ? ? 0.239 ? ? ? ? ? ? ? ? 10.900 ? 0.987 ? ? 0.250 0.075 ? 8 1 0.989 ? ? 2.870 2.950 ? ? ? ? ? ? 107 100.000 ? ? ? ? 0.163 ? ? ? ? ? ? ? ? 11.000 ? 0.923 ? ? 0.171 0.051 ? 9 1 0.993 ? ? 2.950 3.050 ? ? ? ? ? ? 100 100.000 ? ? ? ? 0.122 ? ? ? ? ? ? ? ? 10.900 ? 0.931 ? ? 0.128 0.039 ? 10 1 0.997 ? ? 3.050 3.160 ? ? ? ? ? ? 94 100.000 ? ? ? ? 0.075 ? ? ? ? ? ? ? ? 10.900 ? 0.984 ? ? 0.079 0.024 ? 11 1 0.998 ? ? 3.160 3.280 ? ? ? ? ? ? 113 100.000 ? ? ? ? 0.029 ? ? ? ? ? ? ? ? 10.700 ? 0.948 ? ? 0.031 0.010 ? 12 1 1.000 ? ? 3.280 3.430 ? ? ? ? ? ? 102 100.000 ? ? ? ? 0.036 ? ? ? ? ? ? ? ? 10.700 ? 0.969 ? ? 0.038 0.011 ? 13 1 1.000 ? ? 3.430 3.610 ? ? ? ? ? ? 98 100.000 ? ? ? ? 0.041 ? ? ? ? ? ? ? ? 10.800 ? 1.161 ? ? 0.042 0.013 ? 14 1 1.000 ? ? 3.610 3.840 ? ? ? ? ? ? 105 100.000 ? ? ? ? 0.069 ? ? ? ? ? ? ? ? 10.700 ? 1.192 ? ? 0.073 0.022 ? 15 1 0.998 ? ? 3.840 4.140 ? ? ? ? ? ? 105 100.000 ? ? ? ? 0.062 ? ? ? ? ? ? ? ? 10.700 ? 1.096 ? ? 0.066 0.020 ? 16 1 0.999 ? ? 4.140 4.550 ? ? ? ? ? ? 108 100.000 ? ? ? ? 0.037 ? ? ? ? ? ? ? ? 10.800 ? 0.957 ? ? 0.039 0.012 ? 17 1 0.999 ? ? 4.550 5.210 ? ? ? ? ? ? 105 100.000 ? ? ? ? 0.039 ? ? ? ? ? ? ? ? 10.500 ? 0.910 ? ? 0.041 0.013 ? 18 1 1.000 ? ? 5.210 6.560 ? ? ? ? ? ? 106 100.000 ? ? ? ? 0.032 ? ? ? ? ? ? ? ? 10.700 ? 0.935 ? ? 0.034 0.010 ? 19 1 1.000 ? ? 6.560 50.000 ? ? ? ? ? ? 119 98.300 ? ? ? ? 0.024 ? ? ? ? ? ? ? ? 9.600 ? 0.878 ? ? 0.026 0.008 ? 20 1 1.000 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 94.760 _refine.B_iso_mean 45.4515 _refine.B_iso_min 21.470 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6WK7 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.4230 _refine.ls_d_res_low 27.6240 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 2051 _refine.ls_number_reflns_R_free 204 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.3700 _refine.ls_percent_reflns_R_free 9.9500 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2311 _refine.ls_R_factor_R_free 0.2625 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2275 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.400 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1d3x _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 24.0300 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2200 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.4230 _refine_hist.d_res_low 27.6240 _refine_hist.number_atoms_solvent 29 _refine_hist.number_atoms_total 317 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 12 _refine_hist.pdbx_B_iso_mean_ligand 34.40 _refine_hist.pdbx_B_iso_mean_solvent 56.32 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 234 _refine_hist.pdbx_number_atoms_ligand 54 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.011 ? 314 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.288 ? 470 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.061 ? 46 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 ? 18 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 37.467 ? 112 ? f_dihedral_angle_d ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.4230 _refine_ls_shell.d_res_low 27.6240 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 204 _refine_ls_shell.number_reflns_R_work 1847 _refine_ls_shell.percent_reflns_obs 99.0000 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2625 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.2275 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6WK7 _struct.title 'Crystal Structure Analysis of a poly(thymine) DNA duplex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6WK7 _struct_keywords.text 'melamine-mediated, poly(thymine) DNA duplex, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B AX2 101 ? 9 'binding site for residue AX2 B 101' AC2 Software B AX2 102 ? 8 'binding site for residue AX2 B 102' AC3 Software B AX2 103 ? 7 'binding site for residue AX2 B 103' AC4 Software C AX2 101 ? 10 'binding site for residue AX2 C 101' AC5 Software C AX2 102 ? 10 'binding site for residue AX2 C 102' AC6 Software C AX2 103 ? 8 'binding site for residue AX2 C 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DT A 1 ? DT B 1 . ? 1_555 ? 2 AC1 9 DT A 2 ? DT B 2 . ? 1_555 ? 3 AC1 9 DT A 3 ? DT B 3 . ? 1_555 ? 4 AC1 9 DT A 4 ? DT B 4 . ? 2_565 ? 5 AC1 9 AX2 E . ? AX2 B 103 . ? 1_555 ? 6 AC1 9 HOH I . ? HOH B 210 . ? 2_565 ? 7 AC1 9 DT B 5 ? DT C 5 . ? 1_555 ? 8 AC1 9 DT B 6 ? DT C 6 . ? 1_555 ? 9 AC1 9 AX2 F . ? AX2 C 101 . ? 1_555 ? 10 AC2 8 DT A 4 ? DT B 4 . ? 1_555 ? 11 AC2 8 DT A 5 ? DT B 5 . ? 1_555 ? 12 AC2 8 DT A 6 ? DT B 6 . ? 1_555 ? 13 AC2 8 DT B 1 ? DT C 1 . ? 1_555 ? 14 AC2 8 DT B 2 ? DT C 2 . ? 1_555 ? 15 AC2 8 DT B 3 ? DT C 3 . ? 1_555 ? 16 AC2 8 AX2 G . ? AX2 C 102 . ? 1_555 ? 17 AC2 8 AX2 H . ? AX2 C 103 . ? 1_555 ? 18 AC3 7 DT A 1 ? DT B 1 . ? 1_555 ? 19 AC3 7 DT A 2 ? DT B 2 . ? 1_555 ? 20 AC3 7 DT A 6 ? DT B 6 . ? 19_554 ? 21 AC3 7 AX2 C . ? AX2 B 101 . ? 1_555 ? 22 AC3 7 HOH I . ? HOH B 207 . ? 2_565 ? 23 AC3 7 DT B 6 ? DT C 6 . ? 1_555 ? 24 AC3 7 AX2 H . ? AX2 C 103 . ? 19_554 ? 25 AC4 10 DT A 2 ? DT B 2 . ? 1_555 ? 26 AC4 10 DT A 3 ? DT B 3 . ? 1_555 ? 27 AC4 10 DT A 4 ? DT B 4 . ? 2_565 ? 28 AC4 10 DT A 4 ? DT B 4 . ? 1_555 ? 29 AC4 10 DT A 5 ? DT B 5 . ? 2_565 ? 30 AC4 10 AX2 C . ? AX2 B 101 . ? 1_555 ? 31 AC4 10 DT B 3 ? DT C 3 . ? 1_555 ? 32 AC4 10 DT B 4 ? DT C 4 . ? 1_555 ? 33 AC4 10 DT B 5 ? DT C 5 . ? 1_555 ? 34 AC4 10 AX2 G . ? AX2 C 102 . ? 1_555 ? 35 AC5 10 DT A 4 ? DT B 4 . ? 1_555 ? 36 AC5 10 DT A 5 ? DT B 5 . ? 2_565 ? 37 AC5 10 DT A 5 ? DT B 5 . ? 1_555 ? 38 AC5 10 AX2 D . ? AX2 B 102 . ? 1_555 ? 39 AC5 10 DT B 2 ? DT C 2 . ? 1_555 ? 40 AC5 10 DT B 3 ? DT C 3 . ? 1_555 ? 41 AC5 10 DT B 4 ? DT C 4 . ? 1_555 ? 42 AC5 10 AX2 F . ? AX2 C 101 . ? 1_555 ? 43 AC5 10 HOH J . ? HOH C 205 . ? 1_555 ? 44 AC5 10 HOH J . ? HOH C 208 . ? 1_555 ? 45 AC6 8 DT A 5 ? DT B 5 . ? 1_555 ? 46 AC6 8 DT A 6 ? DT B 6 . ? 1_555 ? 47 AC6 8 AX2 D . ? AX2 B 102 . ? 1_555 ? 48 AC6 8 AX2 E . ? AX2 B 103 . ? 22_555 ? 49 AC6 8 DT B 1 ? DT C 1 . ? 1_555 ? 50 AC6 8 DT B 2 ? DT C 2 . ? 1_555 ? 51 AC6 8 DT B 6 ? DT C 6 . ? 22_555 ? 52 AC6 8 HOH J . ? HOH C 207 . ? 1_555 ? # _atom_sites.entry_id 6WK7 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.014779 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014779 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014779 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT B . n A 1 2 DT 2 2 2 DT DT B . n A 1 3 DT 3 3 3 DT DT B . n A 1 4 DT 4 4 4 DT DT B . n A 1 5 DT 5 5 5 DT DT B . n A 1 6 DT 6 6 6 DT DT B . n B 1 1 DT 1 1 1 DT DT C . n B 1 2 DT 2 2 2 DT DT C . n B 1 3 DT 3 3 3 DT DT C . n B 1 4 DT 4 4 4 DT DT C . n B 1 5 DT 5 5 5 DT DT C . n B 1 6 DT 6 6 6 DT DT C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AX2 1 101 1 AX2 AX2 B . D 2 AX2 1 102 4 AX2 AX2 B . E 2 AX2 1 103 6 AX2 AX2 B . F 2 AX2 1 101 2 AX2 AX2 C . G 2 AX2 1 102 3 AX2 AX2 C . H 2 AX2 1 103 5 AX2 AX2 C . I 3 HOH 1 201 11 HOH HOH B . I 3 HOH 2 202 12 HOH HOH B . I 3 HOH 3 203 28 HOH HOH B . I 3 HOH 4 204 9 HOH HOH B . I 3 HOH 5 205 3 HOH HOH B . I 3 HOH 6 206 7 HOH HOH B . I 3 HOH 7 207 15 HOH HOH B . I 3 HOH 8 208 14 HOH HOH B . I 3 HOH 9 209 4 HOH HOH B . I 3 HOH 10 210 23 HOH HOH B . I 3 HOH 11 211 13 HOH HOH B . I 3 HOH 12 212 29 HOH HOH B . J 3 HOH 1 201 21 HOH HOH C . J 3 HOH 2 202 24 HOH HOH C . J 3 HOH 3 203 25 HOH HOH C . J 3 HOH 4 204 22 HOH HOH C . J 3 HOH 5 205 1 HOH HOH C . J 3 HOH 6 206 26 HOH HOH C . J 3 HOH 7 207 17 HOH HOH C . J 3 HOH 8 208 2 HOH HOH C . J 3 HOH 9 209 8 HOH HOH C . J 3 HOH 10 210 18 HOH HOH C . J 3 HOH 11 211 16 HOH HOH C . J 3 HOH 12 212 5 HOH HOH C . J 3 HOH 13 213 27 HOH HOH C . J 3 HOH 14 214 19 HOH HOH C . J 3 HOH 15 215 10 HOH HOH C . J 3 HOH 16 216 20 HOH HOH C . J 3 HOH 17 217 6 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 760 ? 1 MORE -10 ? 1 'SSA (A^2)' 2760 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-07-22 2 'Structure model' 1 1 2020-09-02 3 'Structure model' 1 2 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 3 'Structure model' '_database_2.pdbx_DOI' 6 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 5.7765 _pdbx_refine_tls.origin_y 40.3085 _pdbx_refine_tls.origin_z 16.5784 _pdbx_refine_tls.T[1][1] 0.3295 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] 0.1156 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] 0.1389 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.3325 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] -0.0150 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.3888 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 0.2150 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] 0.1596 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] 0.3211 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 0.3325 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] 0.0833 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 0.5958 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] 0.4601 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] 0.2622 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] 0.9870 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.0000 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] -0.0867 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] -0.1982 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] -0.0825 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] -0.0320 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] 0.2007 _pdbx_refine_tls.S[3][3]_esd ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? B 1 ? ? ? B 6 ? ? all 2 'X-RAY DIFFRACTION' 1 ? ? C 1 ? ? ? C 6 ? ? all 3 'X-RAY DIFFRACTION' 1 ? ? D 1 ? ? ? D 5 ? ? all 4 'X-RAY DIFFRACTION' 1 ? ? D 6 ? ? ? D 6 ? ? all 5 'X-RAY DIFFRACTION' 1 ? ? G 1 ? ? ? G 29 ? ? all # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.12-2829 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 1.12 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 5 # _pdbx_entry_details.entry_id 6WK7 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_asym_id B _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 212 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.label_atom_id ? _pdbx_distant_solvent_atoms.label_asym_id ? _pdbx_distant_solvent_atoms.label_comp_id ? _pdbx_distant_solvent_atoms.label_seq_id ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance ? _pdbx_distant_solvent_atoms.neighbor_ligand_distance 6.35 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AX2 C2 C Y N 1 AX2 C4 C Y N 2 AX2 C6 C Y N 3 AX2 N7 N N N 4 AX2 N8 N N N 5 AX2 N5 N Y N 6 AX2 N9 N N N 7 AX2 N3 N Y N 8 AX2 N1 N Y N 9 AX2 HN7 H N N 10 AX2 HN7A H N N 11 AX2 HN8 H N N 12 AX2 HN8A H N N 13 AX2 HN9 H N N 14 AX2 HN9A H N N 15 DT OP3 O N N 16 DT P P N N 17 DT OP1 O N N 18 DT OP2 O N N 19 DT "O5'" O N N 20 DT "C5'" C N N 21 DT "C4'" C N R 22 DT "O4'" O N N 23 DT "C3'" C N S 24 DT "O3'" O N N 25 DT "C2'" C N N 26 DT "C1'" C N R 27 DT N1 N N N 28 DT C2 C N N 29 DT O2 O N N 30 DT N3 N N N 31 DT C4 C N N 32 DT O4 O N N 33 DT C5 C N N 34 DT C7 C N N 35 DT C6 C N N 36 DT HOP3 H N N 37 DT HOP2 H N N 38 DT "H5'" H N N 39 DT "H5''" H N N 40 DT "H4'" H N N 41 DT "H3'" H N N 42 DT "HO3'" H N N 43 DT "H2'" H N N 44 DT "H2''" H N N 45 DT "H1'" H N N 46 DT H3 H N N 47 DT H71 H N N 48 DT H72 H N N 49 DT H73 H N N 50 DT H6 H N N 51 HOH O O N N 52 HOH H1 H N N 53 HOH H2 H N N 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AX2 C2 N7 sing N N 1 AX2 C2 N3 doub Y N 2 AX2 C2 N1 sing Y N 3 AX2 C4 N5 doub Y N 4 AX2 C4 N9 sing N N 5 AX2 C4 N3 sing Y N 6 AX2 C6 N8 sing N N 7 AX2 C6 N5 sing Y N 8 AX2 C6 N1 doub Y N 9 AX2 N7 HN7 sing N N 10 AX2 N7 HN7A sing N N 11 AX2 N8 HN8 sing N N 12 AX2 N8 HN8A sing N N 13 AX2 N9 HN9 sing N N 14 AX2 N9 HN9A sing N N 15 DT OP3 P sing N N 16 DT OP3 HOP3 sing N N 17 DT P OP1 doub N N 18 DT P OP2 sing N N 19 DT P "O5'" sing N N 20 DT OP2 HOP2 sing N N 21 DT "O5'" "C5'" sing N N 22 DT "C5'" "C4'" sing N N 23 DT "C5'" "H5'" sing N N 24 DT "C5'" "H5''" sing N N 25 DT "C4'" "O4'" sing N N 26 DT "C4'" "C3'" sing N N 27 DT "C4'" "H4'" sing N N 28 DT "O4'" "C1'" sing N N 29 DT "C3'" "O3'" sing N N 30 DT "C3'" "C2'" sing N N 31 DT "C3'" "H3'" sing N N 32 DT "O3'" "HO3'" sing N N 33 DT "C2'" "C1'" sing N N 34 DT "C2'" "H2'" sing N N 35 DT "C2'" "H2''" sing N N 36 DT "C1'" N1 sing N N 37 DT "C1'" "H1'" sing N N 38 DT N1 C2 sing N N 39 DT N1 C6 sing N N 40 DT C2 O2 doub N N 41 DT C2 N3 sing N N 42 DT N3 C4 sing N N 43 DT N3 H3 sing N N 44 DT C4 O4 doub N N 45 DT C4 C5 sing N N 46 DT C5 C7 sing N N 47 DT C5 C6 doub N N 48 DT C7 H71 sing N N 49 DT C7 H72 sing N N 50 DT C7 H73 sing N N 51 DT C6 H6 sing N N 52 HOH O H1 sing N N 53 HOH O H2 sing N N 54 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Natural Science Foundation of China (NSFC)' China 21974111 1 'National Science Foundation (NSF, United States)' 'United States' CBET-1904921 2 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' 'NIH 1R01CA236350' 3 'Natural Sciences and Engineering Research Council (NSERC, Canada)' Canada ? 4 'Office of Naval Research' 'United States' N00014-15-1-2707 5 'Banting Postdoctoral Fellowships' Canada ? 6 'Canada Research Chairs' Canada ? 7 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id AX2 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id AX2 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,3,5-triazine-2,4,6-triamine AX2 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1D3X _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #