HEADER VIRAL PROTEIN 16-APR-20 6WKQ TITLE 1.98 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF NSP16-NSP10 HETERODIMER TITLE 2 FROM SARS-COV-2 IN COMPLEX WITH SINEFUNGIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2'-O-METHYLTRANSFERASE; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 6799-7096; COMPND 5 SYNONYM: NON-STRUCTURAL PROTEIN 16,NSP16,SARS-COV-2 NSP16; COMPND 6 EC: 2.1.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NON-STRUCTURAL PROTEIN 10; COMPND 10 CHAIN: B, D; COMPND 11 FRAGMENT: UNP RESIDUES 4254-4392; COMPND 12 SYNONYM: NSP10,GROWTH FACTOR-LIKE PEPTIDE,GFL,SARS-COV-2 NSP10; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG53; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 14 2; SOURCE 15 ORGANISM_COMMON: 2019-NCOV; SOURCE 16 ORGANISM_TAXID: 2697049; SOURCE 17 GENE: REP, 1A-1B; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, NSP16, NSP10, COMPLEX, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,L.SHUVALOVA,M.ROSAS-LEMUS,O.KIRYUKHINA,K.J.F.SATCHELL, AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 4 18-OCT-23 6WKQ 1 REMARK REVDAT 3 27-JAN-21 6WKQ 1 COMPND JRNL LINK REVDAT 2 06-MAY-20 6WKQ 1 COMPND SOURCE DBREF SEQADV REVDAT 1 29-APR-20 6WKQ 0 JRNL AUTH M.ROSAS-LEMUS,G.MINASOV,L.SHUVALOVA,N.L.INNISS,O.KIRYUKHINA, JRNL AUTH 2 J.BRUNZELLE,K.J.F.SATCHELL JRNL TITL HIGH-RESOLUTION STRUCTURES OF THE SARS-COV-2 2'- O JRNL TITL 2 -METHYLTRANSFERASE REVEAL STRATEGIES FOR STRUCTURE-BASED JRNL TITL 3 INHIBITOR DESIGN. JRNL REF SCI.SIGNAL. V. 13 2020 JRNL REFN ESSN 1937-9145 JRNL PMID 32994211 JRNL DOI 10.1126/SCISIGNAL.ABE1202 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 108429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.941 REMARK 3 FREE R VALUE TEST SET COUNT : 5357 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7561 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 399 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6408 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 107 REMARK 3 SOLVENT ATOMS : 636 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28300 REMARK 3 B22 (A**2) : 0.28300 REMARK 3 B33 (A**2) : -0.91700 REMARK 3 B12 (A**2) : 0.14100 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.237 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6842 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6193 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9294 ; 1.342 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14422 ; 0.347 ; 1.586 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 868 ; 2.463 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 299 ;25.641 ;23.946 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1136 ; 8.057 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ; 5.649 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 905 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7724 ; 0.055 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1385 ; 0.051 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1426 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 115 ; 0.223 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3356 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 591 ; 0.121 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 11 ; 0.121 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3430 ; 1.603 ; 2.506 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3431 ; 1.603 ; 2.507 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4312 ; 2.656 ; 3.740 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4313 ; 2.655 ; 3.741 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3412 ; 2.340 ; 2.785 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3383 ; 2.327 ; 2.766 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4982 ; 3.460 ; 4.051 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4983 ; 3.460 ; 4.052 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6800 A 6827 REMARK 3 ORIGIN FOR THE GROUP (A): 92.7669 35.3984 9.8184 REMARK 3 T TENSOR REMARK 3 T11: 0.1559 T22: 0.0097 REMARK 3 T33: 0.0947 T12: -0.0124 REMARK 3 T13: -0.0138 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 2.1894 L22: 0.3208 REMARK 3 L33: 4.5154 L12: -0.2718 REMARK 3 L13: 1.3472 L23: -0.0158 REMARK 3 S TENSOR REMARK 3 S11: -0.1001 S12: -0.0895 S13: 0.2920 REMARK 3 S21: 0.0447 S22: 0.0170 S23: -0.0478 REMARK 3 S31: -0.2461 S32: 0.0843 S33: 0.0831 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6828 A 6931 REMARK 3 ORIGIN FOR THE GROUP (A): 84.0377 19.3689 -6.4362 REMARK 3 T TENSOR REMARK 3 T11: 0.2251 T22: 0.0359 REMARK 3 T33: 0.0478 T12: -0.0068 REMARK 3 T13: -0.0202 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.4012 L22: 1.0074 REMARK 3 L33: 1.2155 L12: -0.0065 REMARK 3 L13: 0.2791 L23: 0.3450 REMARK 3 S TENSOR REMARK 3 S11: -0.0178 S12: 0.0897 S13: -0.0672 REMARK 3 S21: -0.1950 S22: 0.0639 S23: 0.0978 REMARK 3 S31: 0.1677 S32: -0.0375 S33: -0.0461 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6932 A 6948 REMARK 3 ORIGIN FOR THE GROUP (A): 87.6746 15.2254 15.0498 REMARK 3 T TENSOR REMARK 3 T11: 0.2852 T22: 0.0729 REMARK 3 T33: 0.0781 T12: -0.0156 REMARK 3 T13: 0.0340 T23: 0.0632 REMARK 3 L TENSOR REMARK 3 L11: 4.1210 L22: 3.2506 REMARK 3 L33: 6.8864 L12: -0.9860 REMARK 3 L13: -0.7687 L23: 2.5016 REMARK 3 S TENSOR REMARK 3 S11: 0.1255 S12: -0.2560 S13: -0.4297 REMARK 3 S21: 0.6369 S22: -0.0329 S23: 0.1513 REMARK 3 S31: 0.6081 S32: -0.3935 S33: -0.0927 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6949 A 7059 REMARK 3 ORIGIN FOR THE GROUP (A): 94.0057 25.9185 0.4711 REMARK 3 T TENSOR REMARK 3 T11: 0.1419 T22: 0.0464 REMARK 3 T33: 0.0502 T12: 0.0112 REMARK 3 T13: 0.0019 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 1.1265 L22: 1.1516 REMARK 3 L33: 1.8668 L12: 0.1604 REMARK 3 L13: 0.2663 L23: 0.2664 REMARK 3 S TENSOR REMARK 3 S11: -0.0439 S12: 0.0012 S13: 0.0202 REMARK 3 S21: -0.0759 S22: 0.0959 S23: -0.0603 REMARK 3 S31: 0.0787 S32: 0.2287 S33: -0.0520 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7060 A 7096 REMARK 3 ORIGIN FOR THE GROUP (A): 101.8622 13.8732 -12.2691 REMARK 3 T TENSOR REMARK 3 T11: 0.2008 T22: 0.1305 REMARK 3 T33: 0.0841 T12: 0.0425 REMARK 3 T13: 0.0764 T23: -0.0537 REMARK 3 L TENSOR REMARK 3 L11: 2.4012 L22: 6.5049 REMARK 3 L33: 1.4693 L12: 3.3620 REMARK 3 L13: -0.7600 L23: -1.1967 REMARK 3 S TENSOR REMARK 3 S11: -0.1519 S12: 0.1455 S13: -0.3324 REMARK 3 S21: -0.3672 S22: 0.1737 S23: -0.5042 REMARK 3 S31: 0.1414 S32: 0.3226 S33: -0.0218 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4271 B 4289 REMARK 3 ORIGIN FOR THE GROUP (A): 54.8522 6.4895 -12.1411 REMARK 3 T TENSOR REMARK 3 T11: 0.1760 T22: 0.1607 REMARK 3 T33: 0.3854 T12: -0.1182 REMARK 3 T13: -0.0935 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.9457 L22: 9.7624 REMARK 3 L33: 4.0717 L12: -1.5198 REMARK 3 L13: -0.1221 L23: 1.1166 REMARK 3 S TENSOR REMARK 3 S11: 0.1437 S12: -0.0645 S13: -0.3112 REMARK 3 S21: -0.4777 S22: -0.3291 S23: 0.5024 REMARK 3 S31: 0.1035 S32: -0.4568 S33: 0.1853 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4290 B 4332 REMARK 3 ORIGIN FOR THE GROUP (A): 68.8936 22.7613 -14.8069 REMARK 3 T TENSOR REMARK 3 T11: 0.2140 T22: 0.0511 REMARK 3 T33: 0.0846 T12: -0.0357 REMARK 3 T13: -0.1176 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 2.2211 L22: 2.3474 REMARK 3 L33: 1.5551 L12: -0.6481 REMARK 3 L13: 0.3410 L23: -0.1536 REMARK 3 S TENSOR REMARK 3 S11: -0.0027 S12: 0.1299 S13: -0.0475 REMARK 3 S21: -0.3445 S22: 0.0676 S23: 0.3623 REMARK 3 S31: 0.1278 S32: -0.1809 S33: -0.0650 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4333 B 4362 REMARK 3 ORIGIN FOR THE GROUP (A): 67.5376 14.1860 -17.0976 REMARK 3 T TENSOR REMARK 3 T11: 0.2689 T22: 0.0771 REMARK 3 T33: 0.1273 T12: -0.0543 REMARK 3 T13: -0.1316 T23: -0.0356 REMARK 3 L TENSOR REMARK 3 L11: 3.0262 L22: 4.9392 REMARK 3 L33: 2.4460 L12: -0.5767 REMARK 3 L13: 0.1306 L23: -0.5684 REMARK 3 S TENSOR REMARK 3 S11: 0.0522 S12: 0.4082 S13: -0.3803 REMARK 3 S21: -0.4275 S22: -0.0247 S23: 0.3354 REMARK 3 S31: 0.2936 S32: -0.1305 S33: -0.0275 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4363 B 4392 REMARK 3 ORIGIN FOR THE GROUP (A): 60.6783 24.9549 -31.1207 REMARK 3 T TENSOR REMARK 3 T11: 0.3631 T22: 0.2788 REMARK 3 T33: 0.1499 T12: -0.0685 REMARK 3 T13: -0.2163 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 0.7222 L22: 4.9961 REMARK 3 L33: 3.2818 L12: -1.7967 REMARK 3 L13: 0.5569 L23: -2.5744 REMARK 3 S TENSOR REMARK 3 S11: 0.1933 S12: 0.1278 S13: -0.1401 REMARK 3 S21: -0.5353 S22: -0.0802 S23: 0.3035 REMARK 3 S31: 0.3904 S32: -0.3488 S33: -0.1130 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6799 C 6827 REMARK 3 ORIGIN FOR THE GROUP (A): 91.1316 -37.6872 -24.2507 REMARK 3 T TENSOR REMARK 3 T11: 0.1933 T22: 0.0853 REMARK 3 T33: 0.1000 T12: 0.0641 REMARK 3 T13: -0.0045 T23: -0.0658 REMARK 3 L TENSOR REMARK 3 L11: 3.4115 L22: 1.4770 REMARK 3 L33: 1.9851 L12: -0.0005 REMARK 3 L13: -0.4732 L23: 0.2154 REMARK 3 S TENSOR REMARK 3 S11: 0.0856 S12: 0.2728 S13: -0.4028 REMARK 3 S21: 0.0097 S22: -0.0096 S23: -0.0855 REMARK 3 S31: 0.1990 S32: 0.2772 S33: -0.0760 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6828 C 6931 REMARK 3 ORIGIN FOR THE GROUP (A): 81.6610 -20.4131 -9.7791 REMARK 3 T TENSOR REMARK 3 T11: 0.1801 T22: 0.0121 REMARK 3 T33: 0.0610 T12: 0.0223 REMARK 3 T13: 0.0198 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.0758 L22: 1.1014 REMARK 3 L33: 1.8428 L12: 0.0558 REMARK 3 L13: 0.0280 L23: 0.2401 REMARK 3 S TENSOR REMARK 3 S11: 0.0461 S12: -0.0012 S13: 0.0755 REMARK 3 S21: 0.0217 S22: -0.0215 S23: 0.1018 REMARK 3 S31: -0.0914 S32: -0.0012 S33: -0.0246 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6932 C 6939 REMARK 3 ORIGIN FOR THE GROUP (A): 85.1526 -16.3385 -32.3090 REMARK 3 T TENSOR REMARK 3 T11: 0.2499 T22: 0.2481 REMARK 3 T33: 0.0503 T12: 0.1254 REMARK 3 T13: 0.0466 T23: 0.0722 REMARK 3 L TENSOR REMARK 3 L11: 27.3458 L22: 19.4784 REMARK 3 L33: 25.6349 L12: -11.2605 REMARK 3 L13: -12.1280 L23: 22.3324 REMARK 3 S TENSOR REMARK 3 S11: 0.2661 S12: -0.7049 S13: 0.3924 REMARK 3 S21: -0.4208 S22: -0.3421 S23: 0.0555 REMARK 3 S31: -0.4747 S32: -0.4339 S33: 0.0760 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6940 C 7058 REMARK 3 ORIGIN FOR THE GROUP (A): 91.9935 -27.4020 -15.7519 REMARK 3 T TENSOR REMARK 3 T11: 0.1566 T22: 0.0530 REMARK 3 T33: 0.0433 T12: 0.0311 REMARK 3 T13: 0.0141 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.9432 L22: 0.6431 REMARK 3 L33: 2.0793 L12: -0.0102 REMARK 3 L13: -0.0094 L23: 0.3813 REMARK 3 S TENSOR REMARK 3 S11: 0.0222 S12: 0.1080 S13: -0.0783 REMARK 3 S21: -0.0265 S22: 0.0547 S23: -0.0619 REMARK 3 S31: 0.0360 S32: 0.2672 S33: -0.0769 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 7059 C 7096 REMARK 3 ORIGIN FOR THE GROUP (A): 98.7253 -16.6992 -0.7316 REMARK 3 T TENSOR REMARK 3 T11: 0.1104 T22: 0.1238 REMARK 3 T33: 0.0475 T12: -0.0330 REMARK 3 T13: -0.0133 T23: -0.0371 REMARK 3 L TENSOR REMARK 3 L11: 1.4389 L22: 4.8874 REMARK 3 L33: 2.8060 L12: -1.6498 REMARK 3 L13: 0.9415 L23: -0.7251 REMARK 3 S TENSOR REMARK 3 S11: -0.0993 S12: -0.0121 S13: 0.1719 REMARK 3 S21: 0.2925 S22: 0.0988 S23: -0.4135 REMARK 3 S31: -0.1100 S32: 0.4787 S33: 0.0005 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 4271 D 4289 REMARK 3 ORIGIN FOR THE GROUP (A): 53.6705 -4.5075 -9.9004 REMARK 3 T TENSOR REMARK 3 T11: 0.1552 T22: 0.1927 REMARK 3 T33: 0.5049 T12: 0.1625 REMARK 3 T13: -0.0359 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.1108 L22: 9.6448 REMARK 3 L33: 7.0799 L12: 3.1214 REMARK 3 L13: 1.2077 L23: 1.3248 REMARK 3 S TENSOR REMARK 3 S11: 0.0193 S12: -0.0342 S13: 0.4056 REMARK 3 S21: 0.1868 S22: -0.0392 S23: 1.0966 REMARK 3 S31: -0.3227 S32: -0.3492 S33: 0.0198 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 4290 D 4328 REMARK 3 ORIGIN FOR THE GROUP (A): 65.0654 -23.5545 -3.7792 REMARK 3 T TENSOR REMARK 3 T11: 0.1083 T22: 0.0786 REMARK 3 T33: 0.1050 T12: 0.0008 REMARK 3 T13: 0.0476 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 2.1348 L22: 3.3991 REMARK 3 L33: 2.2645 L12: 0.1943 REMARK 3 L13: 0.2525 L23: -0.3652 REMARK 3 S TENSOR REMARK 3 S11: 0.0839 S12: -0.1824 S13: 0.1468 REMARK 3 S21: 0.1922 S22: -0.0655 S23: 0.3582 REMARK 3 S31: -0.0160 S32: -0.3722 S33: -0.0184 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 4329 D 4348 REMARK 3 ORIGIN FOR THE GROUP (A): 67.1737 -7.0457 -2.0365 REMARK 3 T TENSOR REMARK 3 T11: 0.2141 T22: 0.0438 REMARK 3 T33: 0.2701 T12: 0.0411 REMARK 3 T13: 0.0767 T23: -0.0728 REMARK 3 L TENSOR REMARK 3 L11: 3.1026 L22: 6.2651 REMARK 3 L33: 2.7446 L12: -0.8978 REMARK 3 L13: -0.4522 L23: -0.4905 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: -0.2684 S13: 0.6309 REMARK 3 S21: 0.5468 S22: 0.0592 S23: 0.2845 REMARK 3 S31: -0.4875 S32: -0.1717 S33: -0.0596 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 4349 D 4386 REMARK 3 ORIGIN FOR THE GROUP (A): 56.5760 -19.8307 2.3673 REMARK 3 T TENSOR REMARK 3 T11: 0.1324 T22: 0.1861 REMARK 3 T33: 0.2233 T12: 0.0431 REMARK 3 T13: 0.1300 T23: -0.0457 REMARK 3 L TENSOR REMARK 3 L11: 1.6511 L22: 3.4739 REMARK 3 L33: 4.8921 L12: 0.4628 REMARK 3 L13: -0.7342 L23: -1.0933 REMARK 3 S TENSOR REMARK 3 S11: 0.0705 S12: -0.1790 S13: 0.2392 REMARK 3 S21: 0.3943 S22: 0.0633 S23: 0.6848 REMARK 3 S31: -0.2546 S32: -0.7280 S33: -0.1338 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 6WKQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000248516. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : BE REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108598 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.78400 REMARK 200 R SYM FOR SHELL (I) : 0.78400 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 6W75 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5.3 MG/ML 1:1 NSP10/NSP16 IN 0.15 M REMARK 280 SODIUM CHLORIDE, 0.01 M TRIS, PH 7.5, 2 MM SAM, 1 MM TCEP, 5% REMARK 280 GLYCEROL AGAINST COMPAS SCREEN F10 (0.4 M POTASSIUM/SODIUM REMARK 280 TARTRATE), SOAK AND CRYOPROTECTION: 5 MM SFG, 4 M SODIUM FORMATE, REMARK 280 3 HRS, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.42600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.71300 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.71300 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 65.42600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 6796 REMARK 465 ASN A 6797 REMARK 465 ALA A 6798 REMARK 465 SER A 6799 REMARK 465 SER B 4251 REMARK 465 ASN B 4252 REMARK 465 ALA B 4253 REMARK 465 ALA B 4254 REMARK 465 GLY B 4255 REMARK 465 ASN B 4256 REMARK 465 ALA B 4257 REMARK 465 THR B 4258 REMARK 465 GLU B 4259 REMARK 465 VAL B 4260 REMARK 465 PRO B 4261 REMARK 465 ALA B 4262 REMARK 465 ASN B 4263 REMARK 465 SER B 4264 REMARK 465 THR B 4265 REMARK 465 VAL B 4266 REMARK 465 LEU B 4267 REMARK 465 SER B 4268 REMARK 465 PHE B 4269 REMARK 465 CYS B 4270 REMARK 465 SER C 6796 REMARK 465 ASN C 6797 REMARK 465 ALA C 6798 REMARK 465 LYS C 6935 REMARK 465 ASN C 6936 REMARK 465 VAL C 6937 REMARK 465 THR C 6938 REMARK 465 SER D 4251 REMARK 465 ASN D 4252 REMARK 465 ALA D 4253 REMARK 465 ALA D 4254 REMARK 465 GLY D 4255 REMARK 465 ASN D 4256 REMARK 465 ALA D 4257 REMARK 465 THR D 4258 REMARK 465 GLU D 4259 REMARK 465 VAL D 4260 REMARK 465 PRO D 4261 REMARK 465 ALA D 4262 REMARK 465 ASN D 4263 REMARK 465 SER D 4264 REMARK 465 THR D 4265 REMARK 465 VAL D 4266 REMARK 465 LEU D 4267 REMARK 465 SER D 4268 REMARK 465 PHE D 4269 REMARK 465 CYS D 4270 REMARK 465 ARG D 4387 REMARK 465 GLU D 4388 REMARK 465 PRO D 4389 REMARK 465 MET D 4390 REMARK 465 LEU D 4391 REMARK 465 GLN D 4392 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A6856 53.13 -90.29 REMARK 500 ASN A7008 88.55 71.16 REMARK 500 SER A7059 76.28 -104.49 REMARK 500 ARG A7081 160.94 179.68 REMARK 500 VAL B4372 -64.16 -92.26 REMARK 500 TYR B4379 44.21 -146.71 REMARK 500 ASN C6827 30.40 -95.67 REMARK 500 THR C6856 53.22 -102.13 REMARK 500 LYS C6933 37.69 -78.31 REMARK 500 ASN C6941 77.62 -103.43 REMARK 500 ASN C7008 89.15 72.90 REMARK 500 ARG C7081 163.30 179.52 REMARK 500 TYR D4379 49.26 -146.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A7101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A6884 O REMARK 620 2 GLN A6885 O 83.6 REMARK 620 3 LEU A6887 O 84.4 104.1 REMARK 620 4 HOH A7382 O 166.5 89.4 86.1 REMARK 620 5 HOH B4508 O 83.0 132.8 119.3 110.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A7102 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A6910 O REMARK 620 2 SER A7090 OG 77.8 REMARK 620 3 HOH A7201 O 109.4 85.4 REMARK 620 4 HOH A7204 O 97.4 70.8 139.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B4401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B4327 SG REMARK 620 2 CYS B4330 SG 112.8 REMARK 620 3 HIS B4336 NE2 107.7 112.9 REMARK 620 4 CYS B4343 SG 107.0 115.8 99.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B4402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B4370 SG REMARK 620 2 CYS B4373 SG 108.4 REMARK 620 3 CYS B4381 SG 99.3 107.6 REMARK 620 4 CYS B4383 SG 110.6 121.2 107.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C7101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG C6884 O REMARK 620 2 GLN C6885 O 84.6 REMARK 620 3 LEU C6887 O 88.0 108.4 REMARK 620 4 HOH C7350 O 80.1 136.7 111.2 REMARK 620 5 HOH C7406 O 173.3 88.9 95.7 103.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C7102 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE C6910 O REMARK 620 2 SER C7090 OG 79.6 REMARK 620 3 HOH C7278 O 97.1 65.4 REMARK 620 4 HOH C7421 O 121.7 94.8 133.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D4401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D4327 SG REMARK 620 2 CYS D4330 SG 116.1 REMARK 620 3 HIS D4336 NE2 106.0 112.6 REMARK 620 4 CYS D4343 SG 104.1 115.0 101.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D4402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D4370 SG REMARK 620 2 CYS D4373 SG 109.9 REMARK 620 3 CYS D4381 SG 97.3 109.8 REMARK 620 4 CYS D4383 SG 110.6 119.4 107.5 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6W75 RELATED DB: PDB REMARK 900 NSP16-NSP10 COMPLEX WITH SAM REMARK 900 RELATED ID: 6WJT RELATED DB: PDB REMARK 900 NSP16-NSP10 COMPLEX WITH SAH REMARK 900 RELATED ID: IDP51000.201 RELATED DB: TARGETTRACK DBREF 6WKQ A 6799 7096 UNP P0DTD1 R1AB_SARS2 6799 7096 DBREF 6WKQ B 4254 4392 UNP P0DTD1 R1AB_SARS2 4254 4392 DBREF 6WKQ C 6799 7096 UNP P0DTD1 R1AB_SARS2 6799 7096 DBREF 6WKQ D 4254 4392 UNP P0DTD1 R1AB_SARS2 4254 4392 SEQADV 6WKQ SER A 6796 UNP P0DTD1 EXPRESSION TAG SEQADV 6WKQ ASN A 6797 UNP P0DTD1 EXPRESSION TAG SEQADV 6WKQ ALA A 6798 UNP P0DTD1 EXPRESSION TAG SEQADV 6WKQ SER B 4251 UNP P0DTD1 EXPRESSION TAG SEQADV 6WKQ ASN B 4252 UNP P0DTD1 EXPRESSION TAG SEQADV 6WKQ ALA B 4253 UNP P0DTD1 EXPRESSION TAG SEQADV 6WKQ SER C 6796 UNP P0DTD1 EXPRESSION TAG SEQADV 6WKQ ASN C 6797 UNP P0DTD1 EXPRESSION TAG SEQADV 6WKQ ALA C 6798 UNP P0DTD1 EXPRESSION TAG SEQADV 6WKQ SER D 4251 UNP P0DTD1 EXPRESSION TAG SEQADV 6WKQ ASN D 4252 UNP P0DTD1 EXPRESSION TAG SEQADV 6WKQ ALA D 4253 UNP P0DTD1 EXPRESSION TAG SEQRES 1 A 301 SER ASN ALA SER SER GLN ALA TRP GLN PRO GLY VAL ALA SEQRES 2 A 301 MET PRO ASN LEU TYR LYS MET GLN ARG MET LEU LEU GLU SEQRES 3 A 301 LYS CYS ASP LEU GLN ASN TYR GLY ASP SER ALA THR LEU SEQRES 4 A 301 PRO LYS GLY ILE MET MET ASN VAL ALA LYS TYR THR GLN SEQRES 5 A 301 LEU CYS GLN TYR LEU ASN THR LEU THR LEU ALA VAL PRO SEQRES 6 A 301 TYR ASN MET ARG VAL ILE HIS PHE GLY ALA GLY SER ASP SEQRES 7 A 301 LYS GLY VAL ALA PRO GLY THR ALA VAL LEU ARG GLN TRP SEQRES 8 A 301 LEU PRO THR GLY THR LEU LEU VAL ASP SER ASP LEU ASN SEQRES 9 A 301 ASP PHE VAL SER ASP ALA ASP SER THR LEU ILE GLY ASP SEQRES 10 A 301 CYS ALA THR VAL HIS THR ALA ASN LYS TRP ASP LEU ILE SEQRES 11 A 301 ILE SER ASP MET TYR ASP PRO LYS THR LYS ASN VAL THR SEQRES 12 A 301 LYS GLU ASN ASP SER LYS GLU GLY PHE PHE THR TYR ILE SEQRES 13 A 301 CYS GLY PHE ILE GLN GLN LYS LEU ALA LEU GLY GLY SER SEQRES 14 A 301 VAL ALA ILE LYS ILE THR GLU HIS SER TRP ASN ALA ASP SEQRES 15 A 301 LEU TYR LYS LEU MET GLY HIS PHE ALA TRP TRP THR ALA SEQRES 16 A 301 PHE VAL THR ASN VAL ASN ALA SER SER SER GLU ALA PHE SEQRES 17 A 301 LEU ILE GLY CYS ASN TYR LEU GLY LYS PRO ARG GLU GLN SEQRES 18 A 301 ILE ASP GLY TYR VAL MET HIS ALA ASN TYR ILE PHE TRP SEQRES 19 A 301 ARG ASN THR ASN PRO ILE GLN LEU SER SER TYR SER LEU SEQRES 20 A 301 PHE ASP MET SER LYS PHE PRO LEU LYS LEU ARG GLY THR SEQRES 21 A 301 ALA VAL MET SER LEU LYS GLU GLY GLN ILE ASN ASP MET SEQRES 22 A 301 ILE LEU SER LEU LEU SER LYS GLY ARG LEU ILE ILE ARG SEQRES 23 A 301 GLU ASN ASN ARG VAL VAL ILE SER SER ASP VAL LEU VAL SEQRES 24 A 301 ASN ASN SEQRES 1 B 142 SER ASN ALA ALA GLY ASN ALA THR GLU VAL PRO ALA ASN SEQRES 2 B 142 SER THR VAL LEU SER PHE CYS ALA PHE ALA VAL ASP ALA SEQRES 3 B 142 ALA LYS ALA TYR LYS ASP TYR LEU ALA SER GLY GLY GLN SEQRES 4 B 142 PRO ILE THR ASN CYS VAL LYS MET LEU CYS THR HIS THR SEQRES 5 B 142 GLY THR GLY GLN ALA ILE THR VAL THR PRO GLU ALA ASN SEQRES 6 B 142 MET ASP GLN GLU SER PHE GLY GLY ALA SER CYS CYS LEU SEQRES 7 B 142 TYR CYS ARG CYS HIS ILE ASP HIS PRO ASN PRO LYS GLY SEQRES 8 B 142 PHE CYS ASP LEU LYS GLY LYS TYR VAL GLN ILE PRO THR SEQRES 9 B 142 THR CYS ALA ASN ASP PRO VAL GLY PHE THR LEU LYS ASN SEQRES 10 B 142 THR VAL CYS THR VAL CYS GLY MET TRP LYS GLY TYR GLY SEQRES 11 B 142 CYS SER CYS ASP GLN LEU ARG GLU PRO MET LEU GLN SEQRES 1 C 301 SER ASN ALA SER SER GLN ALA TRP GLN PRO GLY VAL ALA SEQRES 2 C 301 MET PRO ASN LEU TYR LYS MET GLN ARG MET LEU LEU GLU SEQRES 3 C 301 LYS CYS ASP LEU GLN ASN TYR GLY ASP SER ALA THR LEU SEQRES 4 C 301 PRO LYS GLY ILE MET MET ASN VAL ALA LYS TYR THR GLN SEQRES 5 C 301 LEU CYS GLN TYR LEU ASN THR LEU THR LEU ALA VAL PRO SEQRES 6 C 301 TYR ASN MET ARG VAL ILE HIS PHE GLY ALA GLY SER ASP SEQRES 7 C 301 LYS GLY VAL ALA PRO GLY THR ALA VAL LEU ARG GLN TRP SEQRES 8 C 301 LEU PRO THR GLY THR LEU LEU VAL ASP SER ASP LEU ASN SEQRES 9 C 301 ASP PHE VAL SER ASP ALA ASP SER THR LEU ILE GLY ASP SEQRES 10 C 301 CYS ALA THR VAL HIS THR ALA ASN LYS TRP ASP LEU ILE SEQRES 11 C 301 ILE SER ASP MET TYR ASP PRO LYS THR LYS ASN VAL THR SEQRES 12 C 301 LYS GLU ASN ASP SER LYS GLU GLY PHE PHE THR TYR ILE SEQRES 13 C 301 CYS GLY PHE ILE GLN GLN LYS LEU ALA LEU GLY GLY SER SEQRES 14 C 301 VAL ALA ILE LYS ILE THR GLU HIS SER TRP ASN ALA ASP SEQRES 15 C 301 LEU TYR LYS LEU MET GLY HIS PHE ALA TRP TRP THR ALA SEQRES 16 C 301 PHE VAL THR ASN VAL ASN ALA SER SER SER GLU ALA PHE SEQRES 17 C 301 LEU ILE GLY CYS ASN TYR LEU GLY LYS PRO ARG GLU GLN SEQRES 18 C 301 ILE ASP GLY TYR VAL MET HIS ALA ASN TYR ILE PHE TRP SEQRES 19 C 301 ARG ASN THR ASN PRO ILE GLN LEU SER SER TYR SER LEU SEQRES 20 C 301 PHE ASP MET SER LYS PHE PRO LEU LYS LEU ARG GLY THR SEQRES 21 C 301 ALA VAL MET SER LEU LYS GLU GLY GLN ILE ASN ASP MET SEQRES 22 C 301 ILE LEU SER LEU LEU SER LYS GLY ARG LEU ILE ILE ARG SEQRES 23 C 301 GLU ASN ASN ARG VAL VAL ILE SER SER ASP VAL LEU VAL SEQRES 24 C 301 ASN ASN SEQRES 1 D 142 SER ASN ALA ALA GLY ASN ALA THR GLU VAL PRO ALA ASN SEQRES 2 D 142 SER THR VAL LEU SER PHE CYS ALA PHE ALA VAL ASP ALA SEQRES 3 D 142 ALA LYS ALA TYR LYS ASP TYR LEU ALA SER GLY GLY GLN SEQRES 4 D 142 PRO ILE THR ASN CYS VAL LYS MET LEU CYS THR HIS THR SEQRES 5 D 142 GLY THR GLY GLN ALA ILE THR VAL THR PRO GLU ALA ASN SEQRES 6 D 142 MET ASP GLN GLU SER PHE GLY GLY ALA SER CYS CYS LEU SEQRES 7 D 142 TYR CYS ARG CYS HIS ILE ASP HIS PRO ASN PRO LYS GLY SEQRES 8 D 142 PHE CYS ASP LEU LYS GLY LYS TYR VAL GLN ILE PRO THR SEQRES 9 D 142 THR CYS ALA ASN ASP PRO VAL GLY PHE THR LEU LYS ASN SEQRES 10 D 142 THR VAL CYS THR VAL CYS GLY MET TRP LYS GLY TYR GLY SEQRES 11 D 142 CYS SER CYS ASP GLN LEU ARG GLU PRO MET LEU GLN HET NA A7101 1 HET NA A7102 1 HET SFG A7103 27 HET FMT A7104 3 HET FMT A7105 3 HET FMT A7106 3 HET FMT A7107 3 HET FMT A7108 3 HET FMT A7109 3 HET ZN B4401 1 HET ZN B4402 1 HET NA C7101 1 HET NA C7102 1 HET SFG C7103 27 HET FMT C7104 3 HET FMT C7105 3 HET FMT C7106 3 HET FMT C7107 3 HET FMT C7108 3 HET FMT C7109 3 HET FMT C7110 3 HET FMT C7111 3 HET FMT C7112 3 HET ZN D4401 1 HET ZN D4402 1 HETNAM NA SODIUM ION HETNAM SFG SINEFUNGIN HETNAM FMT FORMIC ACID HETNAM ZN ZINC ION HETSYN SFG ADENOSYL-ORNITHINE FORMUL 5 NA 4(NA 1+) FORMUL 7 SFG 2(C15 H23 N7 O5) FORMUL 8 FMT 15(C H2 O2) FORMUL 14 ZN 4(ZN 2+) FORMUL 30 HOH *636(H2 O) HELIX 1 AA1 SER A 6800 GLN A 6804 5 5 HELIX 2 AA2 PRO A 6810 GLN A 6816 5 7 HELIX 3 AA3 MET A 6839 ASN A 6853 1 15 HELIX 4 AA4 ALA A 6877 LEU A 6887 1 11 HELIX 5 AA5 ASP A 6912 ALA A 6914 5 3 HELIX 6 AA6 PRO A 6932 VAL A 6937 1 6 HELIX 7 AA7 GLY A 6946 LYS A 6958 1 13 HELIX 8 AA8 ASN A 6975 GLY A 6983 1 9 HELIX 9 AA9 VAL A 6995 ALA A 6997 5 3 HELIX 10 AB1 ASP A 7018 ASN A 7033 1 16 HELIX 11 AB2 SER A 7039 ASP A 7044 5 6 HELIX 12 AB3 ASN A 7066 LYS A 7075 1 10 HELIX 13 AB4 ASP B 4275 SER B 4286 1 12 HELIX 14 AB5 ALA B 4324 CYS B 4326 5 3 HELIX 15 AB6 CYS B 4327 HIS B 4333 1 7 HELIX 16 AB7 THR B 4355 ALA B 4357 5 3 HELIX 17 AB8 ASP B 4359 ASN B 4367 1 9 HELIX 18 AB9 SER C 6799 GLN C 6804 5 6 HELIX 19 AC1 PRO C 6810 MET C 6815 1 6 HELIX 20 AC2 MET C 6839 ASN C 6853 1 15 HELIX 21 AC3 ALA C 6877 LEU C 6887 1 11 HELIX 22 AC4 ASP C 6912 ALA C 6914 5 3 HELIX 23 AC5 GLY C 6946 LYS C 6958 1 13 HELIX 24 AC6 ASN C 6975 GLY C 6983 1 9 HELIX 25 AC7 ASP C 7018 ASN C 7033 1 16 HELIX 26 AC8 SER C 7039 ASP C 7044 5 6 HELIX 27 AC9 LYS C 7061 ILE C 7065 5 5 HELIX 28 AD1 ASN C 7066 LYS C 7075 1 10 HELIX 29 AD2 ASP D 4275 SER D 4286 1 12 HELIX 30 AD3 ALA D 4324 CYS D 4326 5 3 HELIX 31 AD4 CYS D 4327 HIS D 4333 1 7 HELIX 32 AD5 THR D 4355 ALA D 4357 5 3 HELIX 33 AD6 ASP D 4359 ASN D 4367 1 9 SHEET 1 AA1 8 GLY A6806 ALA A6808 0 SHEET 2 AA1 8 PHE A6985 THR A6993 -1 O VAL A6992 N VAL A6807 SHEET 3 AA1 8 ALA A7002 TYR A7009 -1 O CYS A7007 N TRP A6987 SHEET 4 AA1 8 LEU A6959 ILE A6969 -1 N ILE A6967 O LEU A7004 SHEET 5 AA1 8 TRP A6922 SER A6927 1 N TRP A6922 O ALA A6960 SHEET 6 AA1 8 ARG A6864 PHE A6868 1 N PHE A6868 O ILE A6926 SHEET 7 AA1 8 LEU A6892 ASP A6897 1 O VAL A6894 N HIS A6867 SHEET 8 AA1 8 SER A6907 ILE A6910 1 O LEU A6909 N ASP A6895 SHEET 1 AA2 3 VAL A6916 THR A6918 0 SHEET 2 AA2 3 VAL A7087 SER A7090 -1 O SER A7089 N HIS A6917 SHEET 3 AA2 3 VAL C7092 LEU C7093 -1 O VAL C7092 N ILE A7088 SHEET 1 AA3 2 ALA A7056 MET A7058 0 SHEET 2 AA3 2 LEU A7078 ILE A7080 1 O ILE A7079 N MET A7058 SHEET 1 AA4 3 VAL A7092 LEU A7093 0 SHEET 2 AA4 3 VAL C7087 SER C7090 -1 O ILE C7088 N VAL A7092 SHEET 3 AA4 3 VAL C6916 THR C6918 -1 N HIS C6917 O SER C7089 SHEET 1 AA5 3 ILE B4308 THR B4309 0 SHEET 2 AA5 3 TYR B4349 PRO B4353 -1 O TYR B4349 N THR B4309 SHEET 3 AA5 3 GLN B4318 GLY B4322 -1 N GLU B4319 O ILE B4352 SHEET 1 AA6 8 GLY C6806 ALA C6808 0 SHEET 2 AA6 8 PHE C6985 THR C6993 -1 O VAL C6992 N VAL C6807 SHEET 3 AA6 8 ALA C7002 TYR C7009 -1 O CYS C7007 N TRP C6987 SHEET 4 AA6 8 LEU C6959 ILE C6969 -1 N ILE C6967 O LEU C7004 SHEET 5 AA6 8 TRP C6922 SER C6927 1 N TRP C6922 O ALA C6960 SHEET 6 AA6 8 ARG C6864 PHE C6868 1 N PHE C6868 O ILE C6926 SHEET 7 AA6 8 LEU C6892 ASP C6897 1 O LEU C6892 N VAL C6865 SHEET 8 AA6 8 SER C6907 ILE C6910 1 O LEU C6909 N ASP C6895 SHEET 1 AA7 2 ALA C7056 MET C7058 0 SHEET 2 AA7 2 LEU C7078 ILE C7080 1 O ILE C7079 N MET C7058 SHEET 1 AA8 3 ILE D4308 THR D4309 0 SHEET 2 AA8 3 TYR D4349 PRO D4353 -1 O TYR D4349 N THR D4309 SHEET 3 AA8 3 GLN D4318 GLY D4322 -1 N GLU D4319 O ILE D4352 LINK O ARG A6884 NA NA A7101 1555 1555 2.69 LINK O GLN A6885 NA NA A7101 1555 1555 2.53 LINK O LEU A6887 NA NA A7101 1555 1555 2.34 LINK O ILE A6910 NA NA A7102 1555 1555 2.41 LINK OG ASER A7090 NA NA A7102 1555 1555 2.83 LINK NA NA A7101 O HOH A7382 1555 1555 2.26 LINK NA NA A7101 O HOH B4508 1555 1555 2.28 LINK NA NA A7102 O HOH A7201 1555 1555 2.34 LINK NA NA A7102 O HOH A7204 1555 1555 2.38 LINK SG CYS B4327 ZN ZN B4401 1555 1555 2.28 LINK SG CYS B4330 ZN ZN B4401 1555 1555 2.31 LINK NE2 HIS B4336 ZN ZN B4401 1555 1555 2.08 LINK SG CYS B4343 ZN ZN B4401 1555 1555 2.30 LINK SG CYS B4370 ZN ZN B4402 1555 1555 2.32 LINK SG CYS B4373 ZN ZN B4402 1555 1555 2.33 LINK SG CYS B4381 ZN ZN B4402 1555 1555 2.30 LINK SG CYS B4383 ZN ZN B4402 1555 1555 2.35 LINK O ARG C6884 NA NA C7101 1555 1555 2.74 LINK O GLN C6885 NA NA C7101 1555 1555 2.49 LINK O LEU C6887 NA NA C7101 1555 1555 2.25 LINK O ILE C6910 NA NA C7102 1555 1555 2.39 LINK OG SER C7090 NA NA C7102 1555 1555 2.74 LINK NA NA C7101 O HOH C7350 1555 1555 2.42 LINK NA NA C7101 O HOH C7406 1555 1555 2.17 LINK NA NA C7102 O HOH C7278 1555 1555 2.32 LINK NA NA C7102 O HOH C7421 1555 1555 2.26 LINK SG CYS D4327 ZN ZN D4401 1555 1555 2.28 LINK SG CYS D4330 ZN ZN D4401 1555 1555 2.30 LINK NE2 HIS D4336 ZN ZN D4401 1555 1555 2.11 LINK SG CYS D4343 ZN ZN D4401 1555 1555 2.30 LINK SG CYS D4370 ZN ZN D4402 1555 1555 2.33 LINK SG CYS D4373 ZN ZN D4402 1555 1555 2.33 LINK SG CYS D4381 ZN ZN D4402 1555 1555 2.32 LINK SG CYS D4383 ZN ZN D4402 1555 1555 2.34 CRYST1 166.247 166.247 98.139 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006015 0.003473 0.000000 0.00000 SCALE2 0.000000 0.006946 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010190 0.00000