HEADER TRANSFERASE/INHIBITOR 17-APR-20 6WKZ TITLE COCOMPLEX STRUCTURE OF DEOXYHYPUSINE SYNTHASE WITH INHIBITOR 6-[(1R)- TITLE 2 2-AMINO-1-PHENYLETHYL]-3-(PYRIDIN-3-YL)-4H,5H,6H,7H-THIENO[2,3- TITLE 3 C]PYRIDIN-7-ONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYHYPUSINE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DHS; COMPND 5 EC: 2.5.1.46; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DHPS, DS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEOXYHYPUSINE, INHIBITOR, TRANSFERASE, TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.G.KLEIN,G.AMBRUS-AIKELIN REVDAT 3 18-OCT-23 6WKZ 1 REMARK REVDAT 2 25-AUG-21 6WKZ 1 JRNL REVDAT 1 19-AUG-20 6WKZ 0 JRNL AUTH Y.TANAKA,O.KURASAWA,A.YOKOTA,M.G.KLEIN,B.SAITO,S.MATSUMOTO, JRNL AUTH 2 M.OKANIWA,G.AMBRUS-AIKELIN,N.UCHIYAMA,D.MORISHITA,H.KIMURA, JRNL AUTH 3 S.IMAMURA JRNL TITL NEW SERIES OF POTENT ALLOSTERIC INHIBITORS OF DEOXYHYPUSINE JRNL TITL 2 SYNTHASE. JRNL REF ACS MED.CHEM.LETT. V. 11 1645 2020 JRNL REFN ISSN 1948-5875 JRNL PMID 34345355 JRNL DOI 10.1021/ACSMEDCHEMLETT.0C00331 REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0025 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 48017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2574 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3491 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 185 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4617 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 99 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.74000 REMARK 3 B22 (A**2) : 1.74000 REMARK 3 B33 (A**2) : -2.61000 REMARK 3 B12 (A**2) : 0.87000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.176 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4810 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4535 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6529 ; 1.303 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10411 ; 0.776 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 596 ; 5.451 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 221 ;36.996 ;24.706 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 804 ;13.836 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;18.156 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 733 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5470 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1104 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 363 REMARK 3 RESIDUE RANGE : B 701 B 701 REMARK 3 RESIDUE RANGE : A 801 A 846 REMARK 3 RESIDUE RANGE : B 821 B 821 REMARK 3 ORIGIN FOR THE GROUP (A): 41.4576 -22.0601 35.8279 REMARK 3 T TENSOR REMARK 3 T11: 0.1024 T22: 0.0494 REMARK 3 T33: 0.0811 T12: -0.0246 REMARK 3 T13: 0.0141 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.0607 L22: 0.5561 REMARK 3 L33: 1.6973 L12: -0.0409 REMARK 3 L13: -0.1380 L23: 0.2177 REMARK 3 S TENSOR REMARK 3 S11: -0.0437 S12: 0.0090 S13: -0.0082 REMARK 3 S21: 0.1089 S22: 0.0709 S23: 0.0091 REMARK 3 S31: 0.1908 S32: -0.0826 S33: -0.0272 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 28 B 363 REMARK 3 RESIDUE RANGE : A 701 A 701 REMARK 3 ORIGIN FOR THE GROUP (A): 41.5927 2.7565 49.9396 REMARK 3 T TENSOR REMARK 3 T11: 0.0911 T22: 0.0695 REMARK 3 T33: 0.0313 T12: 0.0323 REMARK 3 T13: 0.0091 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.3710 L22: 1.4696 REMARK 3 L33: 1.2937 L12: -0.7343 REMARK 3 L13: 0.4667 L23: -0.8500 REMARK 3 S TENSOR REMARK 3 S11: -0.0475 S12: -0.0461 S13: -0.0486 REMARK 3 S21: 0.1199 S22: 0.0895 S23: 0.1026 REMARK 3 S31: 0.0725 S32: -0.1854 S33: -0.0420 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6WKZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000248406. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50674 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.230 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.95500 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6P4V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES (PH 7.0) AND 2M REMARK 280 SODIUM/POTASSIUM PHOSPHATE (PH 5.0), VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.98067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.49033 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.49033 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 104.98067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -127.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 52.49033 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 LEU A 5 REMARK 465 GLU A 6 REMARK 465 ARG A 7 REMARK 465 GLU A 8 REMARK 465 ALA A 9 REMARK 465 PRO A 10 REMARK 465 ALA A 11 REMARK 465 GLY A 12 REMARK 465 ALA A 13 REMARK 465 LEU A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 VAL A 17 REMARK 465 LEU A 18 REMARK 465 LYS A 19 REMARK 465 HIS A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 THR A 23 REMARK 465 LEU A 24 REMARK 465 PRO A 25 REMARK 465 PRO A 26 REMARK 465 GLU A 27 REMARK 465 HIS A 84 REMARK 465 ALA A 85 REMARK 465 ASP A 86 REMARK 465 LEU A 87 REMARK 465 THR A 88 REMARK 465 GLN A 89 REMARK 465 SER A 90 REMARK 465 ARG A 91 REMARK 465 SER A 152 REMARK 465 LEU A 153 REMARK 465 ARG A 154 REMARK 465 GLY A 155 REMARK 465 LYS A 156 REMARK 465 GLU A 157 REMARK 465 ILE A 290 REMARK 465 ALA A 291 REMARK 465 ASN A 292 REMARK 465 ALA A 293 REMARK 465 ASN A 294 REMARK 465 LEU A 295 REMARK 465 MET A 296 REMARK 465 ARG A 297 REMARK 465 ASN A 298 REMARK 465 ASP A 316 REMARK 465 SER A 317 REMARK 465 GLY A 318 REMARK 465 ALA A 319 REMARK 465 ARG A 320 REMARK 465 PRO A 321 REMARK 465 ASP A 322 REMARK 465 GLU A 323 REMARK 465 ALA A 324 REMARK 465 VAL A 325 REMARK 465 SER A 326 REMARK 465 TRP A 327 REMARK 465 GLY A 328 REMARK 465 LYS A 329 REMARK 465 ILE A 330 REMARK 465 ARG A 331 REMARK 465 VAL A 332 REMARK 465 ASP A 333 REMARK 465 ALA A 334 REMARK 465 HIS A 364 REMARK 465 GLU A 365 REMARK 465 LYS A 366 REMARK 465 ASN A 367 REMARK 465 GLU A 368 REMARK 465 ASP A 369 REMARK 465 GLY B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 LEU B 5 REMARK 465 GLU B 6 REMARK 465 ARG B 7 REMARK 465 GLU B 8 REMARK 465 ALA B 9 REMARK 465 PRO B 10 REMARK 465 ALA B 11 REMARK 465 GLY B 12 REMARK 465 ALA B 13 REMARK 465 LEU B 14 REMARK 465 ALA B 15 REMARK 465 ALA B 16 REMARK 465 VAL B 17 REMARK 465 LEU B 18 REMARK 465 LYS B 19 REMARK 465 HIS B 20 REMARK 465 SER B 21 REMARK 465 SER B 22 REMARK 465 THR B 23 REMARK 465 LEU B 24 REMARK 465 PRO B 25 REMARK 465 PRO B 26 REMARK 465 GLU B 27 REMARK 465 ASP B 80 REMARK 465 GLU B 81 REMARK 465 ASP B 82 REMARK 465 GLN B 83 REMARK 465 HIS B 84 REMARK 465 ALA B 85 REMARK 465 ASP B 86 REMARK 465 LEU B 87 REMARK 465 SER B 152 REMARK 465 LEU B 153 REMARK 465 ARG B 154 REMARK 465 GLY B 155 REMARK 465 LYS B 156 REMARK 465 ILE B 290 REMARK 465 ALA B 291 REMARK 465 ASN B 292 REMARK 465 ALA B 293 REMARK 465 ASN B 294 REMARK 465 LEU B 295 REMARK 465 MET B 296 REMARK 465 ARG B 297 REMARK 465 ASN B 298 REMARK 465 SER B 317 REMARK 465 GLY B 318 REMARK 465 ALA B 319 REMARK 465 ARG B 320 REMARK 465 PRO B 321 REMARK 465 ASP B 322 REMARK 465 GLU B 323 REMARK 465 ALA B 324 REMARK 465 VAL B 325 REMARK 465 SER B 326 REMARK 465 TRP B 327 REMARK 465 GLY B 328 REMARK 465 LYS B 329 REMARK 465 ILE B 330 REMARK 465 ARG B 331 REMARK 465 VAL B 332 REMARK 465 ASP B 333 REMARK 465 ALA B 334 REMARK 465 HIS B 364 REMARK 465 GLU B 365 REMARK 465 LYS B 366 REMARK 465 ASN B 367 REMARK 465 GLU B 368 REMARK 465 ASP B 369 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 83 CG CD OE1 NE2 REMARK 470 GLU A 150 CG CD OE1 OE2 REMARK 470 ARG A 159 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 289 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 274 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 92 OD1 ASP B 126 2.16 REMARK 500 OG SER B 105 O ALA B 132 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 54 -137.55 47.33 REMARK 500 SER A 233 82.21 -169.49 REMARK 500 HIS A 288 -155.06 -101.10 REMARK 500 THR A 354 -91.07 -127.65 REMARK 500 PHE B 54 -141.53 52.72 REMARK 500 LEU B 77 -69.33 -92.27 REMARK 500 SER B 233 86.86 -163.94 REMARK 500 HIS B 288 -161.87 -102.72 REMARK 500 THR B 354 -92.10 -129.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8Y1 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8Y1 B 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V15 RELATED DB: PDB REMARK 900 RELATED ID: 5V2E RELATED DB: PDB DBREF 6WKZ A 1 369 UNP P49366 DHYS_HUMAN 1 369 DBREF 6WKZ B 1 369 UNP P49366 DHYS_HUMAN 1 369 SEQADV 6WKZ GLY A -2 UNP P49366 EXPRESSION TAG SEQADV 6WKZ GLY A -1 UNP P49366 EXPRESSION TAG SEQADV 6WKZ SER A 0 UNP P49366 EXPRESSION TAG SEQADV 6WKZ GLY B -2 UNP P49366 EXPRESSION TAG SEQADV 6WKZ GLY B -1 UNP P49366 EXPRESSION TAG SEQADV 6WKZ SER B 0 UNP P49366 EXPRESSION TAG SEQRES 1 A 372 GLY GLY SER MET GLU GLY SER LEU GLU ARG GLU ALA PRO SEQRES 2 A 372 ALA GLY ALA LEU ALA ALA VAL LEU LYS HIS SER SER THR SEQRES 3 A 372 LEU PRO PRO GLU SER THR GLN VAL ARG GLY TYR ASP PHE SEQRES 4 A 372 ASN ARG GLY VAL ASN TYR ARG ALA LEU LEU GLU ALA PHE SEQRES 5 A 372 GLY THR THR GLY PHE GLN ALA THR ASN PHE GLY ARG ALA SEQRES 6 A 372 VAL GLN GLN VAL ASN ALA MET ILE GLU LYS LYS LEU GLU SEQRES 7 A 372 PRO LEU SER GLN ASP GLU ASP GLN HIS ALA ASP LEU THR SEQRES 8 A 372 GLN SER ARG ARG PRO LEU THR SER CYS THR ILE PHE LEU SEQRES 9 A 372 GLY TYR THR SER ASN LEU ILE SER SER GLY ILE ARG GLU SEQRES 10 A 372 THR ILE ARG TYR LEU VAL GLN HIS ASN MET VAL ASP VAL SEQRES 11 A 372 LEU VAL THR THR ALA GLY GLY VAL GLU GLU ASP LEU ILE SEQRES 12 A 372 LYS CYS LEU ALA PRO THR TYR LEU GLY GLU PHE SER LEU SEQRES 13 A 372 ARG GLY LYS GLU LEU ARG GLU ASN GLY ILE ASN ARG ILE SEQRES 14 A 372 GLY ASN LEU LEU VAL PRO ASN GLU ASN TYR CYS LYS PHE SEQRES 15 A 372 GLU ASP TRP LEU MET PRO ILE LEU ASP GLN MET VAL MET SEQRES 16 A 372 GLU GLN ASN THR GLU GLY VAL LYS TRP THR PRO SER LYS SEQRES 17 A 372 MET ILE ALA ARG LEU GLY LYS GLU ILE ASN ASN PRO GLU SEQRES 18 A 372 SER VAL TYR TYR TRP ALA GLN LYS ASN HIS ILE PRO VAL SEQRES 19 A 372 PHE SER PRO ALA LEU THR ASP GLY SER LEU GLY ASP MET SEQRES 20 A 372 ILE PHE PHE HIS SER TYR LYS ASN PRO GLY LEU VAL LEU SEQRES 21 A 372 ASP ILE VAL GLU ASP LEU ARG LEU ILE ASN THR GLN ALA SEQRES 22 A 372 ILE PHE ALA LYS CYS THR GLY MET ILE ILE LEU GLY GLY SEQRES 23 A 372 GLY VAL VAL LYS HIS HIS ILE ALA ASN ALA ASN LEU MET SEQRES 24 A 372 ARG ASN GLY ALA ASP TYR ALA VAL TYR ILE ASN THR ALA SEQRES 25 A 372 GLN GLU PHE ASP GLY SER ASP SER GLY ALA ARG PRO ASP SEQRES 26 A 372 GLU ALA VAL SER TRP GLY LYS ILE ARG VAL ASP ALA GLN SEQRES 27 A 372 PRO VAL LYS VAL TYR ALA ASP ALA SER LEU VAL PHE PRO SEQRES 28 A 372 LEU LEU VAL ALA GLU THR PHE ALA GLN LYS MET ASP ALA SEQRES 29 A 372 PHE MET HIS GLU LYS ASN GLU ASP SEQRES 1 B 372 GLY GLY SER MET GLU GLY SER LEU GLU ARG GLU ALA PRO SEQRES 2 B 372 ALA GLY ALA LEU ALA ALA VAL LEU LYS HIS SER SER THR SEQRES 3 B 372 LEU PRO PRO GLU SER THR GLN VAL ARG GLY TYR ASP PHE SEQRES 4 B 372 ASN ARG GLY VAL ASN TYR ARG ALA LEU LEU GLU ALA PHE SEQRES 5 B 372 GLY THR THR GLY PHE GLN ALA THR ASN PHE GLY ARG ALA SEQRES 6 B 372 VAL GLN GLN VAL ASN ALA MET ILE GLU LYS LYS LEU GLU SEQRES 7 B 372 PRO LEU SER GLN ASP GLU ASP GLN HIS ALA ASP LEU THR SEQRES 8 B 372 GLN SER ARG ARG PRO LEU THR SER CYS THR ILE PHE LEU SEQRES 9 B 372 GLY TYR THR SER ASN LEU ILE SER SER GLY ILE ARG GLU SEQRES 10 B 372 THR ILE ARG TYR LEU VAL GLN HIS ASN MET VAL ASP VAL SEQRES 11 B 372 LEU VAL THR THR ALA GLY GLY VAL GLU GLU ASP LEU ILE SEQRES 12 B 372 LYS CYS LEU ALA PRO THR TYR LEU GLY GLU PHE SER LEU SEQRES 13 B 372 ARG GLY LYS GLU LEU ARG GLU ASN GLY ILE ASN ARG ILE SEQRES 14 B 372 GLY ASN LEU LEU VAL PRO ASN GLU ASN TYR CYS LYS PHE SEQRES 15 B 372 GLU ASP TRP LEU MET PRO ILE LEU ASP GLN MET VAL MET SEQRES 16 B 372 GLU GLN ASN THR GLU GLY VAL LYS TRP THR PRO SER LYS SEQRES 17 B 372 MET ILE ALA ARG LEU GLY LYS GLU ILE ASN ASN PRO GLU SEQRES 18 B 372 SER VAL TYR TYR TRP ALA GLN LYS ASN HIS ILE PRO VAL SEQRES 19 B 372 PHE SER PRO ALA LEU THR ASP GLY SER LEU GLY ASP MET SEQRES 20 B 372 ILE PHE PHE HIS SER TYR LYS ASN PRO GLY LEU VAL LEU SEQRES 21 B 372 ASP ILE VAL GLU ASP LEU ARG LEU ILE ASN THR GLN ALA SEQRES 22 B 372 ILE PHE ALA LYS CYS THR GLY MET ILE ILE LEU GLY GLY SEQRES 23 B 372 GLY VAL VAL LYS HIS HIS ILE ALA ASN ALA ASN LEU MET SEQRES 24 B 372 ARG ASN GLY ALA ASP TYR ALA VAL TYR ILE ASN THR ALA SEQRES 25 B 372 GLN GLU PHE ASP GLY SER ASP SER GLY ALA ARG PRO ASP SEQRES 26 B 372 GLU ALA VAL SER TRP GLY LYS ILE ARG VAL ASP ALA GLN SEQRES 27 B 372 PRO VAL LYS VAL TYR ALA ASP ALA SER LEU VAL PHE PRO SEQRES 28 B 372 LEU LEU VAL ALA GLU THR PHE ALA GLN LYS MET ASP ALA SEQRES 29 B 372 PHE MET HIS GLU LYS ASN GLU ASP HET 8Y1 A 701 25 HET 8Y1 B 701 25 HETNAM 8Y1 6-[(1R)-2-AMINO-1-PHENYLETHYL]-3-(PYRIDIN-3-YL)-5,6- HETNAM 2 8Y1 DIHYDROTHIENO[2,3-C]PYRIDIN-7(4H)-ONE FORMUL 3 8Y1 2(C20 H19 N3 O S) FORMUL 5 HOH *99(H2 O) HELIX 1 AA1 ASP A 35 GLY A 39 5 5 HELIX 2 AA2 ASN A 41 PHE A 49 1 9 HELIX 3 AA3 GLY A 50 THR A 52 5 3 HELIX 4 AA4 GLY A 53 GLU A 75 1 23 HELIX 5 AA5 THR A 104 SER A 110 1 7 HELIX 6 AA6 GLY A 111 HIS A 122 1 12 HELIX 7 AA7 VAL A 135 ALA A 144 1 10 HELIX 8 AA8 ASN A 173 GLY A 198 1 26 HELIX 9 AA9 THR A 202 ASN A 215 1 14 HELIX 10 AB1 SER A 219 ASN A 227 1 9 HELIX 11 AB2 GLY A 239 ASN A 252 1 14 HELIX 12 AB3 ILE A 259 PHE A 272 1 14 HELIX 13 AB4 ASP A 342 THR A 354 1 13 HELIX 14 AB5 PHE A 355 MET A 363 5 9 HELIX 15 AB6 ASP B 35 GLY B 39 5 5 HELIX 16 AB7 ASN B 41 GLY B 53 1 13 HELIX 17 AB8 GLY B 53 GLU B 75 1 23 HELIX 18 AB9 THR B 104 SER B 110 1 7 HELIX 19 AC1 GLY B 111 HIS B 122 1 12 HELIX 20 AC2 VAL B 135 ALA B 144 1 10 HELIX 21 AC3 ASN B 173 GLU B 197 1 25 HELIX 22 AC4 THR B 202 ASN B 215 1 14 HELIX 23 AC5 SER B 219 ASN B 227 1 9 HELIX 24 AC6 GLY B 239 ASN B 252 1 14 HELIX 25 AC7 ILE B 259 PHE B 272 1 14 HELIX 26 AC8 ASP B 342 THR B 354 1 13 HELIX 27 AC9 PHE B 355 MET B 363 5 9 SHEET 1 AA1 6 VAL A 231 PHE A 232 0 SHEET 2 AA1 6 VAL A 127 THR A 130 1 N LEU A 128 O PHE A 232 SHEET 3 AA1 6 THR A 98 TYR A 103 1 N LEU A 101 O VAL A 127 SHEET 4 AA1 6 THR A 276 LEU A 281 1 O LEU A 281 N GLY A 102 SHEET 5 AA1 6 TYR A 302 ASN A 307 1 O VAL A 304 N ILE A 280 SHEET 6 AA1 6 VAL A 337 TYR A 340 1 O VAL A 339 N TYR A 305 SHEET 1 AA2 3 TYR A 147 LEU A 148 0 SHEET 2 AA2 3 LEU A 169 PRO A 172 -1 O LEU A 170 N TYR A 147 SHEET 3 AA2 3 ILE A 163 ILE A 166 -1 N ASN A 164 O VAL A 171 SHEET 1 AA3 6 VAL B 231 PHE B 232 0 SHEET 2 AA3 6 VAL B 127 THR B 130 1 N LEU B 128 O PHE B 232 SHEET 3 AA3 6 THR B 98 TYR B 103 1 N LEU B 101 O VAL B 127 SHEET 4 AA3 6 THR B 276 LEU B 281 1 O GLY B 277 N PHE B 100 SHEET 5 AA3 6 TYR B 302 ASN B 307 1 O VAL B 304 N MET B 278 SHEET 6 AA3 6 VAL B 337 TYR B 340 1 O VAL B 337 N TYR B 305 SHEET 1 AA4 3 TYR B 147 LEU B 148 0 SHEET 2 AA4 3 LEU B 169 PRO B 172 -1 O LEU B 170 N TYR B 147 SHEET 3 AA4 3 ILE B 163 ILE B 166 -1 N ASN B 164 O VAL B 171 SITE 1 AC1 13 THR A 237 ASP A 238 ASP A 243 PHE B 100 SITE 2 AC1 13 PRO B 234 ILE B 259 ASP B 262 LEU B 263 SITE 3 AC1 13 ASN B 267 ALA B 270 VAL B 286 LYS B 287 SITE 4 AC1 13 HOH B 832 SITE 1 AC2 14 PRO A 234 ILE A 259 ASP A 262 LEU A 263 SITE 2 AC2 14 ASN A 267 ALA A 270 VAL A 285 VAL A 286 SITE 3 AC2 14 LYS A 287 HOH A 825 THR B 237 ASP B 238 SITE 4 AC2 14 ASP B 243 HOH B 821 CRYST1 106.232 106.232 157.471 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009413 0.005435 0.000000 0.00000 SCALE2 0.000000 0.010870 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006350 0.00000