HEADER TRANSCRIPTION 22-APR-20 6WNH TITLE MENIN BOUND TO INHIBITOR M-808 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MENIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MEN1, SCG2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, PROTEIN BINDING, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.A.STUCKEY REVDAT 3 18-OCT-23 6WNH 1 REMARK REVDAT 2 27-MAY-20 6WNH 1 JRNL REVDAT 1 13-MAY-20 6WNH 0 JRNL AUTH S.XU,A.AGUILAR,L.HUANG,T.XU,K.ZHENG,D.MCEACHERN, JRNL AUTH 2 S.PRZYBRANOWSKI,C.FOSTER,K.ZAWACKI,Z.LIU,K.CHINNASWAMY, JRNL AUTH 3 J.STUCKEY,S.WANG JRNL TITL DISCOVERY OF M-808 AS A HIGHLY POTENT, COVALENT, JRNL TITL 2 SMALL-MOLECULE INHIBITOR OF THE MENIN-MLL INTERACTION WITH JRNL TITL 3 STRONGIN VIVOANTITUMOR ACTIVITY. JRNL REF J.MED.CHEM. V. 63 4997 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32338903 JRNL DOI 10.1021/ACS.JMEDCHEM.0C00547 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 65.8 REMARK 3 NUMBER OF REFLECTIONS : 36178 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.760 REMARK 3 FREE R VALUE TEST SET COUNT : 1722 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.15 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 21.33 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 724 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2197 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 694 REMARK 3 BIN R VALUE (WORKING SET) : 0.2186 REMARK 3 BIN FREE R VALUE : 0.2453 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.14 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 30 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3701 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 123 REMARK 3 SOLVENT ATOMS : 252 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39130 REMARK 3 B22 (A**2) : 0.39130 REMARK 3 B33 (A**2) : -0.78260 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.300 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.209 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.183 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.211 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.184 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4024 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5578 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1805 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 686 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4024 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 495 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4639 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.86 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.71 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|2 - 81} REMARK 3 ORIGIN FOR THE GROUP (A): -40.6445 3.5985 -28.3166 REMARK 3 T TENSOR REMARK 3 T11: -0.1073 T22: -0.0283 REMARK 3 T33: 0.0399 T12: 0.0273 REMARK 3 T13: 0.0495 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 1.9791 L22: 1.3998 REMARK 3 L33: 1.0788 L12: 0.6379 REMARK 3 L13: 0.3349 L23: -0.0887 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: 0.0606 S13: -0.2131 REMARK 3 S21: -0.0006 S22: -0.1037 S23: -0.0349 REMARK 3 S31: -0.0315 S32: -0.0363 S33: 0.0822 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|82 - 333} REMARK 3 ORIGIN FOR THE GROUP (A): -25.8876 10.9633 -16.2033 REMARK 3 T TENSOR REMARK 3 T11: -0.0849 T22: -0.0922 REMARK 3 T33: -0.0310 T12: 0.0013 REMARK 3 T13: 0.0569 T23: 0.0942 REMARK 3 L TENSOR REMARK 3 L11: 1.9089 L22: 1.2838 REMARK 3 L33: 0.7818 L12: 0.4181 REMARK 3 L13: 0.3581 L23: 0.2449 REMARK 3 S TENSOR REMARK 3 S11: 0.0605 S12: -0.1410 S13: -0.2210 REMARK 3 S21: 0.1575 S22: -0.0396 S23: -0.0127 REMARK 3 S31: -0.0484 S32: -0.1516 S33: -0.0209 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|334 - 581} REMARK 3 ORIGIN FOR THE GROUP (A): 4.9881 18.0460 -24.5100 REMARK 3 T TENSOR REMARK 3 T11: -0.1056 T22: -0.1216 REMARK 3 T33: 0.1396 T12: -0.0445 REMARK 3 T13: 0.0944 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 0.9099 L22: 1.2128 REMARK 3 L33: 1.0536 L12: -0.1110 REMARK 3 L13: 0.2860 L23: 0.9077 REMARK 3 S TENSOR REMARK 3 S11: -0.0086 S12: 0.1653 S13: -0.0699 REMARK 3 S21: -0.0397 S22: 0.2138 S23: -0.3495 REMARK 3 S31: -0.0289 S32: 0.1761 S33: -0.2052 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WNH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000248677. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55230 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 2.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3U84 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.96 M NACL, 89 MM BIS-TRIS PH 6.8, REMARK 280 0.178 M MGCL2 AND 10.7 MM PR ACETATE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 76.77450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 76.77450 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.64150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 76.77450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.32075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 76.77450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.96225 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 76.77450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.77450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.64150 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 76.77450 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 60.96225 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 76.77450 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 20.32075 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 PR 7PR A 702 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 PRO A 71 REMARK 465 PRO A 72 REMARK 465 GLY A 73 REMARK 465 GLY A 386 REMARK 465 GLU A 387 REMARK 465 GLU A 388 REMARK 465 ARG A 389 REMARK 465 PRO A 390 REMARK 465 GLY A 391 REMARK 465 GLU A 392 REMARK 465 GLN A 393 REMARK 465 SER A 394 REMARK 465 GLN A 395 REMARK 465 GLY A 396 REMARK 465 THR A 397 REMARK 465 GLN A 398 REMARK 465 SER A 399 REMARK 465 GLN A 400 REMARK 465 GLY A 401 REMARK 465 GLY A 528 REMARK 465 PRO A 529 REMARK 465 GLU A 530 REMARK 465 GLY A 531 REMARK 465 GLY A 532 REMARK 465 SER A 533 REMARK 465 THR A 534 REMARK 465 ALA A 535 REMARK 465 GLN A 536 REMARK 465 VAL A 537 REMARK 465 PRO A 538 REMARK 465 ALA A 539 REMARK 465 PRO A 540 REMARK 465 THR A 541 REMARK 465 ALA A 542 REMARK 465 SER A 543 REMARK 465 PRO A 544 REMARK 465 PRO A 545 REMARK 465 PRO A 546 REMARK 465 GLU A 547 REMARK 465 GLN A 582 REMARK 465 SER A 583 REMARK 465 GLN A 584 REMARK 465 VAL A 585 REMARK 465 GLN A 586 REMARK 465 MET A 587 REMARK 465 LYS A 588 REMARK 465 LYS A 589 REMARK 465 GLN A 590 REMARK 465 LYS A 591 REMARK 465 VAL A 592 REMARK 465 SER A 593 REMARK 465 THR A 594 REMARK 465 PRO A 595 REMARK 465 SER A 596 REMARK 465 ASP A 597 REMARK 465 TYR A 598 REMARK 465 THR A 599 REMARK 465 LEU A 600 REMARK 465 SER A 601 REMARK 465 PHE A 602 REMARK 465 LEU A 603 REMARK 465 LYS A 604 REMARK 465 ARG A 605 REMARK 465 GLN A 606 REMARK 465 ARG A 607 REMARK 465 LYS A 608 REMARK 465 GLY A 609 REMARK 465 LEU A 610 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 ASN A 57 CG OD1 ND2 REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 ARG A 108 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 131 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 201 CG CD CE NZ REMARK 470 ASN A 203 CG OD1 ND2 REMARK 470 GLU A 204 CG CD OE1 OE2 REMARK 470 ARG A 206 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 249 CG CD1 CD2 REMARK 470 HIS A 250 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 332 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 355 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 358 CG CD OE1 OE2 REMARK 470 LYS A 362 CD CE NZ REMARK 470 GLU A 384 CG CD OE1 OE2 REMARK 470 GLN A 442 CG CD OE1 NE2 REMARK 470 GLU A 448 CG CD OE1 OE2 REMARK 470 GLN A 450 CG CD OE1 NE2 REMARK 470 ARG A 527 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 569 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 329 C22 7MM A 701 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 49 -36.90 -135.36 REMARK 500 GLU A 60 -50.92 74.70 REMARK 500 GLU A 109 77.37 -69.67 REMARK 500 SER A 178 -154.56 -107.40 REMARK 500 ASP A 180 2.05 -152.38 REMARK 500 GLU A 204 -178.00 69.23 REMARK 500 ARG A 218 34.33 72.88 REMARK 500 SER A 226 58.43 -102.05 REMARK 500 ARG A 314 38.33 38.72 REMARK 500 ASP A 370 -62.41 -131.84 REMARK 500 VAL A 431 -61.97 -103.62 REMARK 500 LYS A 562 -72.86 -22.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1047 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1048 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A1049 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A1050 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH A1051 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH A1052 DISTANCE = 7.91 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 7PR A 705 PR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1010 O REMARK 620 2 7PR A 705 O3 85.9 REMARK 620 3 7PR A 705 O1 137.8 112.1 REMARK 620 4 7PR A 705 O 97.9 110.3 109.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7MM A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7PR A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7PR A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7PR A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7PR A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7PR A 706 DBREF 6WNH A 2 610 UNP O00255 MEN1_HUMAN 2 610 SEQADV 6WNH SER A 1 UNP O00255 EXPRESSION TAG SEQADV 6WNH A UNP O00255 ARG 460 DELETION SEQADV 6WNH A UNP O00255 GLU 461 DELETION SEQADV 6WNH A UNP O00255 ALA 462 DELETION SEQADV 6WNH A UNP O00255 GLU 463 DELETION SEQADV 6WNH A UNP O00255 ALA 464 DELETION SEQADV 6WNH A UNP O00255 ALA 465 DELETION SEQADV 6WNH A UNP O00255 GLU 466 DELETION SEQADV 6WNH A UNP O00255 ALA 467 DELETION SEQADV 6WNH A UNP O00255 GLU 468 DELETION SEQADV 6WNH A UNP O00255 GLU 469 DELETION SEQADV 6WNH A UNP O00255 PRO 470 DELETION SEQADV 6WNH A UNP O00255 TRP 471 DELETION SEQADV 6WNH A UNP O00255 GLY 472 DELETION SEQADV 6WNH A UNP O00255 GLU 473 DELETION SEQADV 6WNH A UNP O00255 GLU 474 DELETION SEQADV 6WNH A UNP O00255 ALA 475 DELETION SEQADV 6WNH A UNP O00255 ARG 476 DELETION SEQADV 6WNH A UNP O00255 GLU 477 DELETION SEQADV 6WNH A UNP O00255 GLY 478 DELETION SEQADV 6WNH A UNP O00255 ARG 479 DELETION SEQADV 6WNH A UNP O00255 ARG 480 DELETION SEQADV 6WNH A UNP O00255 ARG 481 DELETION SEQADV 6WNH A UNP O00255 GLY 482 DELETION SEQADV 6WNH A UNP O00255 PRO 483 DELETION SEQADV 6WNH A UNP O00255 ARG 484 DELETION SEQADV 6WNH A UNP O00255 ARG 485 DELETION SEQADV 6WNH A UNP O00255 GLU 486 DELETION SEQADV 6WNH A UNP O00255 SER 487 DELETION SEQADV 6WNH A UNP O00255 LYS 488 DELETION SEQADV 6WNH A UNP O00255 PRO 489 DELETION SEQADV 6WNH A UNP O00255 GLU 490 DELETION SEQADV 6WNH A UNP O00255 GLU 491 DELETION SEQADV 6WNH A UNP O00255 PRO 492 DELETION SEQADV 6WNH A UNP O00255 PRO 493 DELETION SEQADV 6WNH A UNP O00255 PRO 494 DELETION SEQADV 6WNH A UNP O00255 PRO 495 DELETION SEQADV 6WNH A UNP O00255 LYS 496 DELETION SEQADV 6WNH A UNP O00255 LYS 497 DELETION SEQADV 6WNH A UNP O00255 PRO 498 DELETION SEQADV 6WNH A UNP O00255 ALA 499 DELETION SEQADV 6WNH A UNP O00255 LEU 500 DELETION SEQADV 6WNH A UNP O00255 ASP 501 DELETION SEQADV 6WNH A UNP O00255 LYS 502 DELETION SEQADV 6WNH A UNP O00255 GLY 503 DELETION SEQADV 6WNH A UNP O00255 LEU 504 DELETION SEQADV 6WNH A UNP O00255 GLY 505 DELETION SEQADV 6WNH A UNP O00255 THR 506 DELETION SEQADV 6WNH A UNP O00255 GLY 507 DELETION SEQADV 6WNH A UNP O00255 GLN 508 DELETION SEQADV 6WNH A UNP O00255 GLY 509 DELETION SEQADV 6WNH A UNP O00255 ALA 510 DELETION SEQADV 6WNH A UNP O00255 VAL 511 DELETION SEQADV 6WNH A UNP O00255 SER 512 DELETION SEQADV 6WNH A UNP O00255 GLY 513 DELETION SEQADV 6WNH A UNP O00255 PRO 514 DELETION SEQADV 6WNH A UNP O00255 PRO 515 DELETION SEQADV 6WNH A UNP O00255 ARG 516 DELETION SEQADV 6WNH A UNP O00255 LYS 517 DELETION SEQADV 6WNH A UNP O00255 PRO 518 DELETION SEQADV 6WNH A UNP O00255 PRO 519 DELETION SEQRES 1 A 550 SER GLY LEU LYS ALA ALA GLN LYS THR LEU PHE PRO LEU SEQRES 2 A 550 ARG SER ILE ASP ASP VAL VAL ARG LEU PHE ALA ALA GLU SEQRES 3 A 550 LEU GLY ARG GLU GLU PRO ASP LEU VAL LEU LEU SER LEU SEQRES 4 A 550 VAL LEU GLY PHE VAL GLU HIS PHE LEU ALA VAL ASN ARG SEQRES 5 A 550 VAL ILE PRO THR ASN VAL PRO GLU LEU THR PHE GLN PRO SEQRES 6 A 550 SER PRO ALA PRO ASP PRO PRO GLY GLY LEU THR TYR PHE SEQRES 7 A 550 PRO VAL ALA ASP LEU SER ILE ILE ALA ALA LEU TYR ALA SEQRES 8 A 550 ARG PHE THR ALA GLN ILE ARG GLY ALA VAL ASP LEU SER SEQRES 9 A 550 LEU TYR PRO ARG GLU GLY GLY VAL SER SER ARG GLU LEU SEQRES 10 A 550 VAL LYS LYS VAL SER ASP VAL ILE TRP ASN SER LEU SER SEQRES 11 A 550 ARG SER TYR PHE LYS ASP ARG ALA HIS ILE GLN SER LEU SEQRES 12 A 550 PHE SER PHE ILE THR GLY THR LYS LEU ASP SER SER GLY SEQRES 13 A 550 VAL ALA PHE ALA VAL VAL GLY ALA CYS GLN ALA LEU GLY SEQRES 14 A 550 LEU ARG ASP VAL HIS LEU ALA LEU SER GLU ASP HIS ALA SEQRES 15 A 550 TRP VAL VAL PHE GLY PRO ASN GLY GLU GLN THR ALA GLU SEQRES 16 A 550 VAL THR TRP HIS GLY LYS GLY ASN GLU ASP ARG ARG GLY SEQRES 17 A 550 GLN THR VAL ASN ALA GLY VAL ALA GLU ARG SER TRP LEU SEQRES 18 A 550 TYR LEU LYS GLY SER TYR MET ARG CYS ASP ARG LYS MET SEQRES 19 A 550 GLU VAL ALA PHE MET VAL CYS ALA ILE ASN PRO SER ILE SEQRES 20 A 550 ASP LEU HIS THR ASP SER LEU GLU LEU LEU GLN LEU GLN SEQRES 21 A 550 GLN LYS LEU LEU TRP LEU LEU TYR ASP LEU GLY HIS LEU SEQRES 22 A 550 GLU ARG TYR PRO MET ALA LEU GLY ASN LEU ALA ASP LEU SEQRES 23 A 550 GLU GLU LEU GLU PRO THR PRO GLY ARG PRO ASP PRO LEU SEQRES 24 A 550 THR LEU TYR HIS LYS GLY ILE ALA SER ALA LYS THR TYR SEQRES 25 A 550 TYR ARG ASP GLU HIS ILE TYR PRO TYR MET TYR LEU ALA SEQRES 26 A 550 GLY TYR HIS CYS ARG ASN ARG ASN VAL ARG GLU ALA LEU SEQRES 27 A 550 GLN ALA TRP ALA ASP THR ALA THR VAL ILE GLN ASP TYR SEQRES 28 A 550 ASN TYR CYS ARG GLU ASP GLU GLU ILE TYR LYS GLU PHE SEQRES 29 A 550 PHE GLU VAL ALA ASN ASP VAL ILE PRO ASN LEU LEU LYS SEQRES 30 A 550 GLU ALA ALA SER LEU LEU GLU ALA GLY GLU GLU ARG PRO SEQRES 31 A 550 GLY GLU GLN SER GLN GLY THR GLN SER GLN GLY SER ALA SEQRES 32 A 550 LEU GLN ASP PRO GLU CYS PHE ALA HIS LEU LEU ARG PHE SEQRES 33 A 550 TYR ASP GLY ILE CYS LYS TRP GLU GLU GLY SER PRO THR SEQRES 34 A 550 PRO VAL LEU HIS VAL GLY TRP ALA THR PHE LEU VAL GLN SEQRES 35 A 550 SER LEU GLY ARG PHE GLU GLY GLN VAL ARG GLN LYS VAL SEQRES 36 A 550 ARG ILE VAL SER GLY THR VAL ALA GLY THR ALA ARG GLY SEQRES 37 A 550 PRO GLU GLY GLY SER THR ALA GLN VAL PRO ALA PRO THR SEQRES 38 A 550 ALA SER PRO PRO PRO GLU GLY PRO VAL LEU THR PHE GLN SEQRES 39 A 550 SER GLU LYS MET LYS GLY MET LYS GLU LEU LEU VAL ALA SEQRES 40 A 550 THR LYS ILE ASN SER SER ALA ILE LYS LEU GLN LEU THR SEQRES 41 A 550 ALA GLN SER GLN VAL GLN MET LYS LYS GLN LYS VAL SER SEQRES 42 A 550 THR PRO SER ASP TYR THR LEU SER PHE LEU LYS ARG GLN SEQRES 43 A 550 ARG LYS GLY LEU HET 7MM A 701 122 HET 7PR A 702 22 HET 7PR A 703 22 HET 7PR A 704 22 HET 7PR A 705 22 HET 7PR A 706 22 HETNAM 7MM METHYL [(1S,2R)-2-{(1S)-2-(AZETIDIN-1-YL)-1-(3- HETNAM 2 7MM FLUOROPHENYL)-1-[1-({1-[4-({1-[4-(PIPERIDIN-1-YL) HETNAM 3 7MM BUTANOYL]AZETIDIN-3-YL}SULFONYL)PHENYL]AZETIDIN-3- HETNAM 4 7MM YL}METHYL)PIPERIDIN-4-YL]ETHYL}CYCLOPENTYL]CARBAMATE HETNAM 7PR PRASEODYMIUM TRIACETATE FORMUL 2 7MM C45 H65 F N6 O5 S FORMUL 3 7PR 5(C6 H9 O6 PR) FORMUL 8 HOH *252(H2 O) HELIX 1 AA1 LYS A 4 THR A 9 1 6 HELIX 2 AA2 SER A 15 GLY A 28 1 14 HELIX 3 AA3 ASP A 33 ALA A 49 1 17 HELIX 4 AA4 ASP A 82 VAL A 101 1 20 HELIX 5 AA5 ASP A 102 TYR A 106 5 5 HELIX 6 AA6 SER A 114 LEU A 129 1 16 HELIX 7 AA7 SER A 142 THR A 150 1 9 HELIX 8 AA8 ASP A 153 LEU A 168 1 16 HELIX 9 AA9 VAL A 211 GLU A 217 1 7 HELIX 10 AB1 TYR A 222 SER A 226 5 5 HELIX 11 AB2 ASP A 231 ALA A 242 1 12 HELIX 12 AB3 SER A 253 LEU A 270 1 18 HELIX 13 AB4 TYR A 276 GLU A 290 1 15 HELIX 14 AB5 ASP A 297 TYR A 313 1 17 HELIX 15 AB6 ILE A 318 ASN A 331 1 14 HELIX 16 AB7 ASN A 333 GLN A 349 1 17 HELIX 17 AB8 CYS A 354 GLU A 356 5 3 HELIX 18 AB9 ASP A 357 ASP A 370 1 14 HELIX 19 AC1 ASP A 370 GLU A 384 1 15 HELIX 20 AC2 SER A 402 GLN A 405 5 4 HELIX 21 AC3 ASP A 406 GLU A 425 1 20 HELIX 22 AC4 HIS A 433 GLY A 445 1 13 HELIX 23 AC5 GLU A 448 GLN A 453 1 6 HELIX 24 AC6 SER A 555 ALA A 567 1 13 HELIX 25 AC7 ASN A 571 ALA A 581 1 11 SHEET 1 AA1 2 PHE A 63 PRO A 67 0 SHEET 2 AA1 2 LEU A 75 PRO A 79 -1 O PHE A 78 N GLN A 64 SHEET 1 AA2 4 GLN A 192 ALA A 194 0 SHEET 2 AA2 4 ALA A 182 PHE A 186 -1 N PHE A 186 O GLN A 192 SHEET 3 AA2 4 HIS A 174 LEU A 177 -1 N HIS A 174 O VAL A 185 SHEET 4 AA2 4 MET A 228 ARG A 229 -1 O MET A 228 N LEU A 177 SHEET 1 AA3 2 ARG A 456 ILE A 457 0 SHEET 2 AA3 2 VAL A 550 LEU A 551 1 O LEU A 551 N ARG A 456 LINK PR 7PR A 705 O HOH A1010 1555 1555 3.46 CISPEP 1 PHE A 11 PRO A 12 0 1.04 SITE 1 AC1 24 SER A 155 SER A 178 GLU A 179 ASP A 180 SITE 2 AC1 24 HIS A 181 CYS A 241 ALA A 242 TYR A 276 SITE 3 AC1 24 MET A 278 ASN A 282 TYR A 319 MET A 322 SITE 4 AC1 24 TYR A 323 GLY A 326 CYS A 329 ARG A 330 SITE 5 AC1 24 TRP A 341 GLU A 363 VAL A 367 HOH A 801 SITE 6 AC1 24 HOH A 846 HOH A 850 HOH A 864 HOH A 899 SITE 1 AC2 3 GLU A 366 ASN A 369 ASP A 370 SITE 1 AC3 6 ARG A 14 GLN A 64 PRO A 65 SER A 66 SITE 2 AC3 6 PHE A 78 THR A 346 SITE 1 AC4 4 ARG A 131 SER A 132 TYR A 133 LYS A 135 SITE 1 AC5 8 GLN A 260 ASN A 282 ASP A 285 LEU A 286 SITE 2 AC5 8 TYR A 323 ARG A 330 HOH A 812 HOH A 847 SITE 1 AC6 1 HOH A 913 CRYST1 153.549 153.549 81.283 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006513 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006513 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012303 0.00000