HEADER TRANSFERASE 22-APR-20 6WNN TITLE BACILLUS SUBTILIS BIOA IN COMPLEX WITH AMINO DONOR L-LYS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 7,8-DIAMINO-PELARGONIC ACID AMINOTRANSFERASE,DAPA COMPND 5 AMINOTRANSFERASE,8-DIAMINONONANOATE SYNTHASE,DANS,DIAMINOPELARGONIC COMPND 6 ACID SYNTHASE; COMPND 7 EC: 2.6.1.62; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: BIOA, A3772_16240, B4417_0368; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DAPA SYNTHASE, BIOTIN BIOSYNTHESIS, LYSINE AMINOTRANSFERASE, OMEGA KEYWDS 2 AMINOTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.A.SOUZA,H.L.NG REVDAT 3 15-NOV-23 6WNN 1 REMARK REVDAT 2 18-OCT-23 6WNN 1 REMARK REVDAT 1 28-APR-21 6WNN 0 JRNL AUTH J.CRAMER,C.KUBOTA,S.A.SOUZA,J.MORRIS,H.L.NG,R.SUN, JRNL AUTH 2 J.T.JARRETT JRNL TITL SUBSTRATE DIVERGENCE IN 7,8-DIAMINOPELARGONIC ACID JRNL TITL 2 SYNTHESIS: MUTAGENESIS AND COMPUTATIONAL STUDIES OF L-LYSINE JRNL TITL 3 DEPENDENT BACILLUS SUBTILIS BIOA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 21897 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.333 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1157 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.65 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1241 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.4740 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.5800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6577 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.07000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : -0.23000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.495 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.509 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.246 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.836 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6753 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6494 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9111 ; 1.597 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15024 ; 1.012 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 832 ; 7.708 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 295 ;38.545 ;24.881 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1227 ;19.592 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;18.317 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 999 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7518 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1447 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6WNN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000248617. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23055 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 59.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 2.781 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.88 REMARK 200 R MERGE FOR SHELL (I) : 0.75400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3DOD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM ACETATE, 0.1 M TRIS-HCL, REMARK 280 30% W/V PEG4000, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 HIS A 3 REMARK 465 GLY A 148 REMARK 465 ASP A 149 REMARK 465 THR A 150 REMARK 465 ILE A 151 REMARK 465 GLY A 152 REMARK 465 ALA A 153 REMARK 465 VAL A 154 REMARK 465 SER A 155 REMARK 465 VAL A 156 REMARK 465 GLY A 157 REMARK 465 SER A 158 REMARK 465 ILE A 159 REMARK 465 GLU A 160 REMARK 465 LEU A 161 REMARK 465 PHE A 162 REMARK 465 HIS A 163 REMARK 465 HIS A 164 REMARK 465 VAL A 165 REMARK 465 TYR A 166 REMARK 465 GLY A 167 REMARK 465 PRO A 168 REMARK 465 LEU A 169 REMARK 465 MET A 170 REMARK 465 PHE A 171 REMARK 465 GLU A 172 REMARK 465 HIS A 449 REMARK 465 HIS A 450 REMARK 465 HIS A 451 REMARK 465 HIS A 452 REMARK 465 HIS A 453 REMARK 465 HIS A 454 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 147 REMARK 465 GLY B 148 REMARK 465 ASP B 149 REMARK 465 THR B 150 REMARK 465 ILE B 151 REMARK 465 GLY B 152 REMARK 465 ALA B 153 REMARK 465 VAL B 154 REMARK 465 SER B 155 REMARK 465 VAL B 156 REMARK 465 GLY B 157 REMARK 465 SER B 158 REMARK 465 ILE B 159 REMARK 465 GLU B 160 REMARK 465 LEU B 161 REMARK 465 PHE B 162 REMARK 465 HIS B 163 REMARK 465 HIS B 164 REMARK 465 VAL B 165 REMARK 465 TYR B 166 REMARK 465 GLY B 167 REMARK 465 PRO B 168 REMARK 465 LEU B 169 REMARK 465 MET B 170 REMARK 465 PHE B 171 REMARK 465 GLU B 172 REMARK 465 SER B 173 REMARK 465 GLU B 447 REMARK 465 ASP B 448 REMARK 465 HIS B 449 REMARK 465 HIS B 450 REMARK 465 HIS B 451 REMARK 465 HIS B 452 REMARK 465 HIS B 453 REMARK 465 HIS B 454 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 53 53.21 73.18 REMARK 500 ARG A 61 70.74 49.10 REMARK 500 LYS A 75 -67.30 -99.58 REMARK 500 ILE A 76 134.05 -173.46 REMARK 500 PRO A 101 167.12 -48.94 REMARK 500 LYS A 133 63.33 -118.60 REMARK 500 LYS A 136 102.07 -59.93 REMARK 500 GLN A 137 -22.00 -156.08 REMARK 500 MET A 219 -31.12 80.21 REMARK 500 PHE A 257 58.20 31.21 REMARK 500 ASN A 270 16.30 55.53 REMARK 500 LYS A 280 -97.56 54.59 REMARK 500 TYR A 299 -39.90 -35.24 REMARK 500 ALA A 301 -11.06 -48.72 REMARK 500 ASP A 304 -175.96 -172.20 REMARK 500 THR A 311 160.26 -46.56 REMARK 500 TYR A 318 32.08 -83.77 REMARK 500 SER A 337 -88.07 -60.38 REMARK 500 ASP A 366 143.05 -174.71 REMARK 500 PHE B 17 28.44 44.25 REMARK 500 ILE B 36 41.42 -107.37 REMARK 500 ASN B 42 75.66 -100.82 REMARK 500 SER B 51 55.57 23.20 REMARK 500 ARG B 61 16.97 54.68 REMARK 500 LYS B 75 -61.72 -96.29 REMARK 500 ILE B 76 136.39 -178.20 REMARK 500 LYS B 133 47.83 -142.92 REMARK 500 LYS B 143 130.40 -32.95 REMARK 500 PRO B 179 87.87 -55.30 REMARK 500 ARG B 183 73.55 -104.72 REMARK 500 MET B 219 -41.08 73.29 REMARK 500 SER B 224 9.83 -66.95 REMARK 500 PHE B 257 72.28 56.53 REMARK 500 ARG B 259 -59.59 70.38 REMARK 500 LYS B 280 -87.43 61.48 REMARK 500 THR B 311 124.57 -33.31 REMARK 500 TYR B 318 46.39 -105.75 REMARK 500 SER B 337 -71.28 -81.70 REMARK 500 GLU B 338 0.76 -63.29 REMARK 500 HIS B 363 49.09 -103.98 REMARK 500 SER B 424 114.70 -21.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LLP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PMP B 501 DBREF1 6WNN A 1 448 UNP A0A162RZA9_BACIU DBREF2 6WNN A A0A162RZA9 1 448 DBREF1 6WNN B 1 448 UNP A0A162RZA9_BACIU DBREF2 6WNN B A0A162RZA9 1 448 SEQADV 6WNN HIS A 449 UNP A0A162RZA EXPRESSION TAG SEQADV 6WNN HIS A 450 UNP A0A162RZA EXPRESSION TAG SEQADV 6WNN HIS A 451 UNP A0A162RZA EXPRESSION TAG SEQADV 6WNN HIS A 452 UNP A0A162RZA EXPRESSION TAG SEQADV 6WNN HIS A 453 UNP A0A162RZA EXPRESSION TAG SEQADV 6WNN HIS A 454 UNP A0A162RZA EXPRESSION TAG SEQADV 6WNN HIS B 449 UNP A0A162RZA EXPRESSION TAG SEQADV 6WNN HIS B 450 UNP A0A162RZA EXPRESSION TAG SEQADV 6WNN HIS B 451 UNP A0A162RZA EXPRESSION TAG SEQADV 6WNN HIS B 452 UNP A0A162RZA EXPRESSION TAG SEQADV 6WNN HIS B 453 UNP A0A162RZA EXPRESSION TAG SEQADV 6WNN HIS B 454 UNP A0A162RZA EXPRESSION TAG SEQRES 1 A 454 MET THR HIS ASP LEU ILE GLU LYS SER LYS LYS HIS LEU SEQRES 2 A 454 TRP LEU PRO PHE THR GLN MET LYS ASP TYR ASP GLU ASN SEQRES 3 A 454 PRO LEU ILE ILE GLU SER GLY THR GLY ILE LYS VAL LYS SEQRES 4 A 454 ASP ILE ASN GLY LYS GLU TYR TYR ASP GLY PHE SER SER SEQRES 5 A 454 VAL TRP LEU ASN VAL HIS GLY HIS ARG LYS LYS GLU LEU SEQRES 6 A 454 ASP ASP ALA ILE LYS LYS GLN LEU GLY LYS ILE ALA HIS SEQRES 7 A 454 SER THR LEU LEU GLY MET THR ASN VAL PRO ALA THR GLN SEQRES 8 A 454 LEU ALA GLU THR LEU ILE ASP ILE SER PRO LYS LYS LEU SEQRES 9 A 454 THR ARG VAL PHE TYR SER ASP SER GLY ALA GLU ALA MET SEQRES 10 A 454 GLU ILE ALA LEU LYS MET ALA PHE GLN TYR TRP LYS ASN SEQRES 11 A 454 ILE GLY LYS PRO GLU LYS GLN LYS PHE ILE ALA MET LYS SEQRES 12 A 454 ASN GLY TYR HIS GLY ASP THR ILE GLY ALA VAL SER VAL SEQRES 13 A 454 GLY SER ILE GLU LEU PHE HIS HIS VAL TYR GLY PRO LEU SEQRES 14 A 454 MET PHE GLU SER TYR LYS ALA PRO ILE PRO TYR VAL TYR SEQRES 15 A 454 ARG SER GLU SER GLY ASP PRO ASP GLU CYS ARG ASP GLN SEQRES 16 A 454 CYS LEU ARG GLU LEU ALA GLN LEU LEU GLU GLU HIS HIS SEQRES 17 A 454 GLU GLU ILE ALA ALA LEU SER ILE GLU SER MET VAL GLN SEQRES 18 A 454 GLY ALA SER GLY MET ILE VAL MET PRO GLU GLY TYR LEU SEQRES 19 A 454 ALA GLY VAL ARG GLU LEU CYS THR THR TYR ASP VAL LEU SEQRES 20 A 454 MET ILE VAL ASP GLU VAL ALA THR GLY PHE GLY ARG THR SEQRES 21 A 454 GLY LYS MET PHE ALA CYS GLU HIS GLU ASN VAL GLN PRO SEQRES 22 A 454 ASP LEU MET ALA ALA GLY LYS GLY ILE THR GLY GLY TYR SEQRES 23 A 454 LEU PRO ILE ALA VAL THR PHE ALA THR GLU ASP ILE TYR SEQRES 24 A 454 LYS ALA PHE TYR ASP ASP TYR GLU ASN LEU LYS THR PHE SEQRES 25 A 454 PHE HIS GLY HIS SER TYR THR GLY ASN GLN LEU GLY CYS SEQRES 26 A 454 ALA VAL ALA LEU GLU ASN LEU ALA LEU PHE GLU SER GLU SEQRES 27 A 454 ASN ILE VAL GLU GLN VAL ALA GLU LYS SER LYS LYS LEU SEQRES 28 A 454 HIS PHE LEU LEU GLN ASP LEU HIS ALA LEU PRO HIS VAL SEQRES 29 A 454 GLY ASP ILE ARG GLN LEU GLY PHE MET CYS GLY ALA GLU SEQRES 30 A 454 LEU VAL ARG SER LYS GLU THR LYS GLU PRO TYR PRO ALA SEQRES 31 A 454 ASP ARG ARG ILE GLY TYR LYS VAL SER LEU LYS MET ARG SEQRES 32 A 454 GLU LEU GLY MET LEU THR ARG PRO LEU GLY ASP VAL ILE SEQRES 33 A 454 ALA PHE LEU PRO PRO LEU ALA SER THR ALA GLU GLU LEU SEQRES 34 A 454 SER GLU MET VAL ALA ILE MET LYS GLN ALA ILE HIS GLU SEQRES 35 A 454 VAL THR SER LEU GLU ASP HIS HIS HIS HIS HIS HIS SEQRES 1 B 454 MET THR HIS ASP LEU ILE GLU LYS SER LYS LYS HIS LEU SEQRES 2 B 454 TRP LEU PRO PHE THR GLN MET LYS ASP TYR ASP GLU ASN SEQRES 3 B 454 PRO LEU ILE ILE GLU SER GLY THR GLY ILE LYS VAL LYS SEQRES 4 B 454 ASP ILE ASN GLY LYS GLU TYR TYR ASP GLY PHE SER SER SEQRES 5 B 454 VAL TRP LEU ASN VAL HIS GLY HIS ARG LYS LYS GLU LEU SEQRES 6 B 454 ASP ASP ALA ILE LYS LYS GLN LEU GLY LYS ILE ALA HIS SEQRES 7 B 454 SER THR LEU LEU GLY MET THR ASN VAL PRO ALA THR GLN SEQRES 8 B 454 LEU ALA GLU THR LEU ILE ASP ILE SER PRO LYS LYS LEU SEQRES 9 B 454 THR ARG VAL PHE TYR SER ASP SER GLY ALA GLU ALA MET SEQRES 10 B 454 GLU ILE ALA LEU LYS MET ALA PHE GLN TYR TRP LYS ASN SEQRES 11 B 454 ILE GLY LYS PRO GLU LYS GLN LYS PHE ILE ALA MET LYS SEQRES 12 B 454 ASN GLY TYR HIS GLY ASP THR ILE GLY ALA VAL SER VAL SEQRES 13 B 454 GLY SER ILE GLU LEU PHE HIS HIS VAL TYR GLY PRO LEU SEQRES 14 B 454 MET PHE GLU SER TYR LYS ALA PRO ILE PRO TYR VAL TYR SEQRES 15 B 454 ARG SER GLU SER GLY ASP PRO ASP GLU CYS ARG ASP GLN SEQRES 16 B 454 CYS LEU ARG GLU LEU ALA GLN LEU LEU GLU GLU HIS HIS SEQRES 17 B 454 GLU GLU ILE ALA ALA LEU SER ILE GLU SER MET VAL GLN SEQRES 18 B 454 GLY ALA SER GLY MET ILE VAL MET PRO GLU GLY TYR LEU SEQRES 19 B 454 ALA GLY VAL ARG GLU LEU CYS THR THR TYR ASP VAL LEU SEQRES 20 B 454 MET ILE VAL ASP GLU VAL ALA THR GLY PHE GLY ARG THR SEQRES 21 B 454 GLY LYS MET PHE ALA CYS GLU HIS GLU ASN VAL GLN PRO SEQRES 22 B 454 ASP LEU MET ALA ALA GLY LYS GLY ILE THR GLY GLY TYR SEQRES 23 B 454 LEU PRO ILE ALA VAL THR PHE ALA THR GLU ASP ILE TYR SEQRES 24 B 454 LYS ALA PHE TYR ASP ASP TYR GLU ASN LEU LYS THR PHE SEQRES 25 B 454 PHE HIS GLY HIS SER TYR THR GLY ASN GLN LEU GLY CYS SEQRES 26 B 454 ALA VAL ALA LEU GLU ASN LEU ALA LEU PHE GLU SER GLU SEQRES 27 B 454 ASN ILE VAL GLU GLN VAL ALA GLU LYS SER LYS LYS LEU SEQRES 28 B 454 HIS PHE LEU LEU GLN ASP LEU HIS ALA LEU PRO HIS VAL SEQRES 29 B 454 GLY ASP ILE ARG GLN LEU GLY PHE MET CYS GLY ALA GLU SEQRES 30 B 454 LEU VAL ARG SER LYS GLU THR LYS GLU PRO TYR PRO ALA SEQRES 31 B 454 ASP ARG ARG ILE GLY TYR LYS VAL SER LEU LYS MET ARG SEQRES 32 B 454 GLU LEU GLY MET LEU THR ARG PRO LEU GLY ASP VAL ILE SEQRES 33 B 454 ALA PHE LEU PRO PRO LEU ALA SER THR ALA GLU GLU LEU SEQRES 34 B 454 SER GLU MET VAL ALA ILE MET LYS GLN ALA ILE HIS GLU SEQRES 35 B 454 VAL THR SER LEU GLU ASP HIS HIS HIS HIS HIS HIS HET LLP A 501 25 HET PMP B 501 16 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM PMP 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN PMP PYRIDOXAMINE-5'-PHOSPHATE FORMUL 3 LLP C14 H22 N3 O7 P FORMUL 4 PMP C8 H13 N2 O5 P HELIX 1 AA1 ASP A 4 LEU A 13 1 10 HELIX 2 AA2 GLN A 19 ASN A 26 1 8 HELIX 3 AA3 PHE A 50 LEU A 55 1 6 HELIX 4 AA4 LYS A 62 GLY A 74 1 13 HELIX 5 AA5 VAL A 87 SER A 100 1 14 HELIX 6 AA6 SER A 112 GLY A 132 1 21 HELIX 7 AA7 TYR A 180 SER A 184 5 5 HELIX 8 AA8 ASP A 188 HIS A 208 1 21 HELIX 9 AA9 GLY A 222 MET A 226 1 5 HELIX 10 AB1 TYR A 233 TYR A 244 1 12 HELIX 11 AB2 PHE A 264 ASN A 270 5 7 HELIX 12 AB3 GLY A 279 GLY A 284 5 6 HELIX 13 AB4 GLU A 296 ALA A 301 1 6 HELIX 14 AB5 ASP A 305 LEU A 309 5 5 HELIX 15 AB6 ASN A 321 ASN A 339 1 19 HELIX 16 AB7 ASN A 339 LEU A 355 1 17 HELIX 17 AB8 LEU A 355 ALA A 360 1 6 HELIX 18 AB9 PRO A 389 ARG A 392 5 4 HELIX 19 AC1 ARG A 393 LEU A 405 1 13 HELIX 20 AC2 THR A 425 GLU A 447 1 23 HELIX 21 AC3 LEU B 5 LEU B 13 1 9 HELIX 22 AC4 GLN B 19 ASN B 26 1 8 HELIX 23 AC5 PHE B 50 LEU B 55 1 6 HELIX 24 AC6 LYS B 62 ILE B 76 1 15 HELIX 25 AC7 VAL B 87 ILE B 99 1 13 HELIX 26 AC8 SER B 112 GLY B 132 1 21 HELIX 27 AC9 ASP B 188 HIS B 208 1 21 HELIX 28 AD1 GLY B 232 ASP B 245 1 14 HELIX 29 AD2 PHE B 264 ASN B 270 5 7 HELIX 30 AD3 GLU B 296 TYR B 303 1 8 HELIX 31 AD4 ASP B 305 LEU B 309 5 5 HELIX 32 AD5 ASN B 321 GLU B 338 1 18 HELIX 33 AD6 ASN B 339 ASP B 357 1 19 HELIX 34 AD7 LEU B 358 LEU B 361 5 4 HELIX 35 AD8 ARG B 393 LEU B 405 1 13 HELIX 36 AD9 THR B 425 SER B 445 1 21 SHEET 1 AA1 5 MET A 407 LEU A 408 0 SHEET 2 AA1 5 GLU A 45 ASP A 48 1 N TYR A 47 O LEU A 408 SHEET 3 AA1 5 LYS A 37 ASP A 40 -1 N VAL A 38 O TYR A 46 SHEET 4 AA1 5 ILE A 29 THR A 34 -1 N SER A 32 O LYS A 39 SHEET 5 AA1 5 THR B 85 ASN B 86 1 O THR B 85 N ILE A 30 SHEET 1 AA2 4 THR A 85 ASN A 86 0 SHEET 2 AA2 4 ILE B 29 SER B 32 1 O ILE B 30 N THR A 85 SHEET 3 AA2 4 LYS B 37 ASP B 40 -1 O LYS B 39 N GLU B 31 SHEET 4 AA2 4 GLU B 45 TYR B 47 -1 O TYR B 46 N VAL B 38 SHEET 1 AA3 7 LEU A 104 SER A 110 0 SHEET 2 AA3 7 ALA A 290 THR A 295 -1 O THR A 292 N PHE A 108 SHEET 3 AA3 7 LEU A 275 ALA A 278 -1 N MET A 276 O PHE A 293 SHEET 4 AA3 7 LEU A 247 ASP A 251 1 N VAL A 250 O LEU A 275 SHEET 5 AA3 7 ILE A 211 GLU A 217 1 N LEU A 214 O ILE A 249 SHEET 6 AA3 7 LYS A 138 MET A 142 1 N LYS A 138 O ALA A 212 SHEET 7 AA3 7 TYR A 174 ALA A 176 1 O ALA A 176 N ALA A 141 SHEET 1 AA4 2 VAL A 220 GLN A 221 0 SHEET 2 AA4 2 ILE A 227 VAL A 228 -1 O ILE A 227 N GLN A 221 SHEET 1 AA5 4 VAL A 364 LEU A 370 0 SHEET 2 AA5 4 MET A 373 LEU A 378 -1 O GLU A 377 N ASP A 366 SHEET 3 AA5 4 VAL A 415 PHE A 418 -1 O ILE A 416 N ALA A 376 SHEET 4 AA5 4 ARG A 410 LEU A 412 -1 N LEU A 412 O VAL A 415 SHEET 1 AA6 7 LEU B 104 SER B 110 0 SHEET 2 AA6 7 ALA B 290 THR B 295 -1 O ALA B 294 N ARG B 106 SHEET 3 AA6 7 LEU B 275 ALA B 278 -1 N MET B 276 O PHE B 293 SHEET 4 AA6 7 LEU B 247 GLU B 252 1 N GLU B 252 O ALA B 277 SHEET 5 AA6 7 ILE B 211 GLU B 217 1 N LEU B 214 O ILE B 249 SHEET 6 AA6 7 LYS B 138 MET B 142 1 N LYS B 138 O ALA B 212 SHEET 7 AA6 7 LYS B 175 ALA B 176 1 O ALA B 176 N ALA B 141 SHEET 1 AA7 2 VAL B 220 GLN B 221 0 SHEET 2 AA7 2 ILE B 227 VAL B 228 -1 O ILE B 227 N GLN B 221 SHEET 1 AA8 4 ASP B 366 LEU B 370 0 SHEET 2 AA8 4 MET B 373 GLU B 377 -1 O GLY B 375 N ARG B 368 SHEET 3 AA8 4 VAL B 415 PHE B 418 -1 O PHE B 418 N CYS B 374 SHEET 4 AA8 4 PRO B 411 LEU B 412 -1 N LEU B 412 O VAL B 415 SITE 1 AC1 16 PHE A 17 VAL A 53 TRP A 54 SER A 112 SITE 2 AC1 16 GLY A 113 ALA A 114 TYR A 146 HIS A 147 SITE 3 AC1 16 ASP A 251 VAL A 253 ALA A 254 LYS A 280 SITE 4 AC1 16 ARG A 410 LEU B 82 HIS B 316 SER B 317 SITE 1 AC2 10 HIS A 316 SER A 317 TRP B 54 SER B 112 SITE 2 AC2 10 GLY B 113 ALA B 114 TYR B 146 GLU B 217 SITE 3 AC2 10 ASP B 251 LYS B 280 CRYST1 58.300 60.540 62.720 96.15 106.04 99.23 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017153 0.002788 0.005445 0.00000 SCALE2 0.000000 0.016735 0.002705 0.00000 SCALE3 0.000000 0.000000 0.016805 0.00000